Wall clock time and date at job start Tue Mar 31 2020 12:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00331 * 2 1 4 4 C 1.50700 * 109.47527 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.00033 * 270.02312 * 4 3 2 6 6 C 1.38214 * 119.99752 * 179.97438 * 5 4 3 7 7 C 1.38255 * 120.00147 * 359.75478 * 6 5 4 8 8 C 1.38213 * 119.99733 * 0.49700 * 7 6 5 9 9 C 1.50707 * 119.99886 * 179.77152 * 8 7 6 10 10 C 1.50697 * 109.46941 * 269.72885 * 9 8 7 11 11 O 1.21277 * 120.00217 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99872 * 179.97438 * 10 9 8 13 13 C 1.47434 * 125.64804 * 359.97438 * 12 10 9 14 14 C 1.54904 * 104.83221 * 155.91720 * 13 12 10 15 15 C 1.55160 * 101.58416 * 37.00719 * 14 13 12 16 16 H 1.09000 * 110.71813 * 83.04135 * 15 14 13 17 17 N 1.46496 * 110.71990 * 206.13427 * 15 14 13 18 18 C 1.36939 * 120.00077 * 273.54634 * 17 15 14 19 19 H 1.07997 * 119.99728 * 359.72656 * 18 17 15 20 20 C 1.38815 * 119.99845 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99884 * 359.72042 * 20 18 17 22 22 Si 1.86798 * 119.99660 * 179.72678 * 20 18 17 23 23 H 1.48490 * 109.47339 * 359.97438 * 22 20 18 24 24 H 1.48493 * 109.47239 * 119.99875 * 22 20 18 25 25 H 1.48504 * 109.46636 * 239.99434 * 22 20 18 26 26 C 1.47023 * 125.64927 * 180.02562 * 12 10 9 27 27 C 1.38212 * 119.99718 * 89.99926 * 4 3 2 28 28 H 1.09001 * 109.47083 * 299.99972 * 1 2 3 29 29 H 1.09005 * 109.47144 * 60.00294 * 1 2 3 30 30 H 1.09007 * 109.47192 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47148 * 59.99939 * 3 2 1 32 32 H 1.09003 * 109.47320 * 300.00506 * 3 2 1 33 33 H 1.08002 * 120.00060 * 359.97438 * 5 4 3 34 34 H 1.08003 * 119.99688 * 180.02562 * 6 5 4 35 35 H 1.07999 * 120.00060 * 180.27638 * 7 6 5 36 36 H 1.08999 * 109.46684 * 149.72756 * 9 8 7 37 37 H 1.09002 * 109.46677 * 29.73090 * 9 8 7 38 38 H 1.08995 * 110.36490 * 37.07482 * 13 12 10 39 39 H 1.09000 * 110.46055 * 274.80167 * 13 12 10 40 40 H 1.09008 * 111.00525 * 278.93707 * 14 13 12 41 41 H 1.08994 * 111.04107 * 155.09646 * 14 13 12 42 42 H 0.97004 * 120.00009 * 93.55251 * 17 15 14 43 43 H 0.97000 * 119.99517 * 180.02562 * 21 20 18 44 44 H 1.08998 * 109.88202 * 61.59698 * 26 12 10 45 45 H 1.09004 * 109.88287 * 300.43103 * 26 12 10 46 46 H 1.07994 * 120.00333 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2011 1.1315 1.1983 6 6 5.5789 1.0219 1.1988 7 6 6.2681 0.9619 0.0017 8 6 5.5801 1.0220 -1.1955 9 6 6.3317 0.9618 -2.5003 10 6 6.6949 2.3581 -2.9356 11 8 6.3745 3.3085 -2.2538 12 7 7.3757 2.5507 -4.0827 13 6 7.8263 1.4905 -5.0028 14 6 7.9705 2.1923 -6.3763 15 6 8.5167 3.5835 -5.9595 16 1 9.5965 3.5465 -5.8158 17 7 8.1625 4.5987 -6.9544 18 6 8.9688 4.8017 -8.0425 19 1 9.8682 4.2165 -8.1647 20 6 8.6334 5.7641 -8.9850 21 7 7.5375 6.4776 -8.8357 22 14 9.7374 6.0463 -10.4652 23 1 10.8985 5.1229 -10.3999 24 1 8.9704 5.7905 -11.7107 25 1 10.2212 7.4503 -10.4612 26 6 7.7931 3.8527 -4.6232 27 6 4.2019 1.1316 -1.1961 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.6625 1.1744 2.1334 34 1 6.1168 0.9786 2.1343 35 1 7.3443 0.8718 0.0022 36 1 5.7040 0.4961 -3.2600 37 1 7.2403 0.3741 -2.3694 38 1 7.0825 0.6958 -5.0591 39 1 8.7865 1.0883 -4.6798 40 1 7.0037 2.2845 -6.8713 41 1 8.6836 1.6668 -7.0113 42 1 7.3568 5.1272 -6.8425 43 1 7.3030 7.1498 -9.4945 44 1 8.4725 4.3429 -3.9259 45 1 6.9186 4.4803 -4.7950 46 1 3.6640 1.1744 -2.1315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970465755.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:43 Heat of formation + Delta-G solvation = -61.694480 kcal Electronic energy + Delta-G solvation = -25652.311697 eV Core-core repulsion = 21927.290792 eV Total energy + Delta-G solvation = -3725.020904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.28687 -40.27342 -38.79926 -38.33232 -35.91227 -34.15592 -33.26274 -32.60917 -31.01661 -29.89070 -28.41612 -27.97372 -26.24255 -25.59605 -24.16079 -23.08581 -22.03840 -21.48380 -20.13024 -19.33047 -18.14187 -17.65028 -17.41369 -17.29695 -16.98608 -16.60477 -16.42791 -16.21690 -15.82967 -15.42489 -15.30248 -14.99236 -14.70548 -14.35646 -13.98843 -13.85220 -13.57361 -13.47806 -13.27774 -13.21227 -13.11198 -12.97448 -12.82420 -12.69692 -12.36117 -12.30856 -12.08147 -12.00066 -11.83978 -11.73515 -11.67493 -10.98568 -10.95453 -10.68765 -9.77299 -9.66947 -9.63177 -9.04859 -7.95405 -5.25809 0.32020 0.44657 1.49063 1.49885 1.59879 1.62404 1.97549 2.56551 2.64923 3.16334 3.36777 3.59340 3.68277 3.77743 3.83647 3.93339 3.99641 4.10065 4.17213 4.26052 4.29146 4.33496 4.41050 4.44402 4.50029 4.53585 4.53723 4.58258 4.59874 4.71171 4.76325 4.84980 4.87730 5.01591 5.08856 5.12939 5.21137 5.28322 5.45857 5.51554 5.54437 5.60024 5.63785 6.06590 6.17062 6.25312 6.56360 7.14911 7.31363 8.03524 8.26876 9.28475 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021792 B = 0.002197 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.591855 B =12743.567039 C =13360.354872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.409 6.409 3 C 0.104 3.896 4 C -0.109 4.109 5 C -0.109 4.109 6 C -0.127 4.127 7 C -0.110 4.110 8 C -0.082 4.082 9 C -0.086 4.086 10 C 0.522 3.478 11 O -0.586 6.586 12 N -0.614 5.614 13 C 0.104 3.896 14 C -0.146 4.146 15 C 0.165 3.835 16 H 0.070 0.930 17 N -0.733 5.733 18 C -0.236 4.236 19 H 0.085 0.915 20 C -0.079 4.079 21 N -0.973 5.973 22 Si 0.975 3.025 23 H -0.260 1.260 24 H -0.295 1.295 25 H -0.298 1.298 26 C 0.110 3.890 27 C -0.103 4.103 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.139 0.861 34 H 0.147 0.853 35 H 0.137 0.863 36 H 0.123 0.877 37 H 0.135 0.865 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.371 0.629 43 H 0.250 0.750 44 H 0.059 0.941 45 H 0.040 0.960 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.133 -18.718 19.568 28.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.329 6.329 3 C 0.028 3.972 4 C -0.109 4.109 5 C -0.127 4.127 6 C -0.145 4.145 7 C -0.128 4.128 8 C -0.082 4.082 9 C -0.126 4.126 10 C 0.313 3.687 11 O -0.466 6.466 12 N -0.348 5.348 13 C -0.017 4.017 14 C -0.187 4.187 15 C 0.055 3.945 16 H 0.088 0.912 17 N -0.373 5.373 18 C -0.367 4.367 19 H 0.103 0.897 20 C -0.271 4.271 21 N -0.623 5.623 22 Si 0.805 3.195 23 H -0.184 1.184 24 H -0.223 1.223 25 H -0.225 1.225 26 C -0.014 4.014 27 C -0.121 4.121 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.157 0.843 34 H 0.165 0.835 35 H 0.155 0.845 36 H 0.141 0.859 37 H 0.152 0.848 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.203 0.797 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.069 -18.420 19.874 28.004 hybrid contribution -0.253 1.395 -1.083 1.783 sum -7.322 -17.025 18.791 26.393 Atomic orbital electron populations 1.22956 0.79384 1.03937 1.00951 1.87919 1.21446 1.27917 1.95598 1.21365 0.89183 0.84993 1.01697 1.19773 0.94843 1.02486 0.93788 1.21297 0.94815 0.98804 0.97751 1.21414 0.94316 0.99904 0.98828 1.21324 1.00670 0.98736 0.92042 1.19495 0.93487 1.00532 0.94712 1.20688 1.03441 0.92529 0.95898 1.20934 0.76481 0.92359 0.78941 1.90700 1.55562 1.45477 1.54856 1.48599 1.55270 1.08688 1.22266 1.22591 1.01822 0.89920 0.87390 1.23366 1.01756 0.97103 0.96469 1.21405 0.97266 0.89298 0.86521 0.91161 1.42583 1.28031 1.42550 1.24102 1.19682 1.03465 1.14791 0.98801 0.89680 1.25629 0.99507 0.99435 1.02562 1.69847 1.27311 1.27250 1.37919 0.85039 0.78314 0.77224 0.78966 1.18421 1.22253 1.22531 1.21942 0.98087 0.85920 0.95461 1.21037 0.94070 0.99010 0.97969 0.92788 0.93438 0.88382 0.90983 0.92346 0.84288 0.83486 0.84532 0.85917 0.84751 0.87834 0.88392 0.92704 0.89132 0.79744 0.94112 0.92232 0.94155 0.86269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -8.24 10.69 -148.98 -1.59 -9.83 16 3 C 0.10 1.96 6.06 71.24 0.43 2.39 16 4 C -0.11 -2.44 5.51 -19.87 -0.11 -2.55 16 5 C -0.11 -2.16 9.70 22.27 0.22 -1.94 16 6 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 7 C -0.11 -2.28 9.70 22.27 0.22 -2.06 16 8 C -0.08 -1.87 4.37 -19.86 -0.09 -1.95 16 9 C -0.09 -1.67 4.84 29.10 0.14 -1.52 16 10 C 0.52 15.29 7.84 87.66 0.69 15.98 16 11 O -0.59 -22.80 16.36 -3.02 -0.05 -22.85 16 12 N -0.61 -17.62 3.33 -811.79 -2.70 -20.32 16 13 C 0.10 2.19 6.69 86.85 0.58 2.78 16 14 C -0.15 -4.31 6.77 31.99 0.22 -4.10 16 15 C 0.16 6.12 3.59 46.18 0.17 6.28 16 16 H 0.07 2.53 8.12 -2.39 -0.02 2.51 16 17 N -0.73 -36.15 5.25 -317.33 -1.67 -37.82 16 18 C -0.24 -12.60 9.98 84.03 0.84 -11.76 16 19 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 20 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 21 N -0.97 -59.60 13.06 21.65 0.28 -59.32 16 22 Si 0.98 45.26 29.55 68.60 2.03 47.29 16 23 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 24 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 26 C 0.11 3.96 6.62 86.73 0.57 4.53 16 27 C -0.10 -2.47 9.36 22.27 0.21 -2.26 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 32 H 0.06 1.07 8.09 -2.39 -0.02 1.05 16 33 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 35 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 36 H 0.12 1.86 7.79 -2.39 -0.02 1.84 16 37 H 0.13 1.72 8.08 -2.39 -0.02 1.70 16 38 H 0.10 1.56 7.48 -2.39 -0.02 1.54 16 39 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.09 2.43 8.14 -2.39 -0.02 2.42 16 42 H 0.37 20.28 7.51 -92.71 -0.70 19.58 16 43 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 44 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.04 1.68 7.69 -2.38 -0.02 1.66 16 46 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -74.81 385.34 2.59 -72.22 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.27 Total: 31.44 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 6.02 Total: -0.83 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -4.08 Total: -117.45 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.64 Total: -32.68 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -74.81 2.59 -72.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970465755.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.530 kcal (2) G-P(sol) polarization free energy of solvation -74.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds