Wall clock time and date at job start Tue Mar 31 2020 12:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00377 * 2 1 4 4 C 1.50692 * 109.47522 * 180.02562 * 3 2 1 5 5 C 1.37981 * 120.07197 * 359.97390 * 4 3 2 6 6 C 1.38342 * 120.14406 * 179.97438 * 5 4 3 7 7 C 1.38376 * 120.29530 * 0.02747 * 6 5 4 8 8 C 1.37938 * 120.14265 * 359.73966 * 7 6 5 9 9 C 1.39548 * 120.07561 * 180.02562 * 4 3 2 10 10 C 1.47852 * 120.14455 * 359.95319 * 9 4 3 11 11 O 1.21547 * 119.99709 * 322.16888 * 10 9 4 12 12 N 1.34776 * 119.99976 * 142.17064 * 10 9 4 13 13 C 1.47428 * 125.64916 * 354.66808 * 12 10 9 14 14 C 1.54906 * 104.82987 * 204.09559 * 13 12 10 15 15 C 1.55159 * 101.58551 * 322.99087 * 14 13 12 16 16 H 1.08999 * 110.87030 * 277.07423 * 15 14 13 17 17 N 1.46492 * 110.72215 * 153.86553 * 15 14 13 18 18 C 1.46503 * 120.00215 * 305.02694 * 17 15 14 19 19 C 1.36941 * 120.00044 * 125.02730 * 17 15 14 20 20 H 1.08005 * 119.99711 * 341.71564 * 19 17 15 21 21 C 1.38810 * 120.00059 * 161.44844 * 19 17 15 22 22 N 1.31614 * 119.99660 * 346.04866 * 21 19 17 23 23 Si 1.86802 * 120.00018 * 166.05725 * 21 19 17 24 24 H 1.48495 * 109.46860 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47282 * 119.99363 * 23 21 19 26 26 H 1.48504 * 109.46847 * 239.99540 * 23 21 19 27 27 C 1.47020 * 125.64686 * 174.62871 * 12 10 9 28 28 H 1.08995 * 109.46694 * 60.00054 * 1 2 3 29 29 H 1.08998 * 109.47164 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47029 * 300.00134 * 1 2 3 31 31 H 1.08998 * 109.46715 * 59.99643 * 3 2 1 32 32 H 1.09005 * 109.46555 * 300.00054 * 3 2 1 33 33 H 1.08000 * 119.92985 * 0.03114 * 5 4 3 34 34 H 1.07998 * 119.85308 * 180.02562 * 6 5 4 35 35 H 1.07993 * 119.93116 * 180.02562 * 7 6 5 36 36 H 1.08007 * 120.07737 * 180.27481 * 8 7 6 37 37 H 1.08998 * 110.36488 * 322.93608 * 13 12 10 38 38 H 1.08997 * 110.36332 * 85.14777 * 13 12 10 39 39 H 1.09002 * 111.00423 * 204.91935 * 14 13 12 40 40 H 1.08996 * 111.00832 * 81.06830 * 14 13 12 41 41 H 1.09004 * 109.46574 * 264.97420 * 18 17 15 42 42 H 1.09000 * 109.46967 * 24.97142 * 18 17 15 43 43 H 1.08999 * 109.47230 * 144.98118 * 18 17 15 44 44 H 0.97005 * 119.99569 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.87895 * 59.55628 * 27 12 10 46 46 H 1.08995 * 109.88544 * 298.39324 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1075 -0.0585 -0.0006 6 6 5.4865 -0.1695 -0.0017 7 6 6.2781 0.9655 -0.0023 8 6 5.6960 2.2160 -0.0072 9 6 4.3051 2.3350 -0.0002 10 6 3.6744 3.6723 -0.0002 11 8 2.6633 3.8673 -0.6461 12 7 4.2205 4.6749 0.7160 13 6 5.3735 4.5516 1.6264 14 6 5.2194 5.7275 2.6230 15 6 4.6690 6.8474 1.7008 16 1 5.4795 7.3454 1.1686 17 7 3.8857 7.8157 2.4720 18 6 2.7643 7.3596 3.2971 19 6 4.2016 9.1472 2.4216 20 1 5.1745 9.4585 2.0709 21 6 3.2694 10.0970 2.8162 22 7 2.0083 9.7553 2.9743 23 14 3.8048 11.8603 3.1223 24 1 5.2641 11.9841 2.8770 25 1 3.0695 12.7673 2.2047 26 1 3.5065 12.2310 4.5290 27 6 3.7655 6.0730 0.7181 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8901 33 1 3.4954 -0.9483 -0.0006 34 1 5.9472 -1.1463 -0.0020 35 1 7.3540 0.8720 -0.0036 36 1 6.3149 3.1011 -0.0122 37 1 5.3390 3.5991 2.1552 38 1 6.3068 4.6427 1.0709 39 1 6.1832 6.0091 3.0470 40 1 4.5051 5.4825 3.4090 41 1 1.8366 7.4517 2.7322 42 1 2.9184 6.3170 3.5752 43 1 2.7036 7.9708 4.1976 44 1 1.3568 10.4192 3.2497 45 1 2.7283 6.1247 1.0489 46 1 3.8591 6.4948 -0.2826 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971855577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:30 Heat of formation + Delta-G solvation = -15.142659 kcal Electronic energy + Delta-G solvation = -27008.086766 eV Core-core repulsion = 23285.084500 eV Total energy + Delta-G solvation = -3723.002266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.49963 -38.85675 -37.61725 -37.30313 -34.87574 -32.14766 -32.05264 -31.01766 -29.73604 -27.94510 -27.41376 -26.09088 -25.53850 -24.44183 -22.84748 -22.21899 -21.54619 -19.53960 -19.20101 -17.28316 -17.09001 -16.58912 -16.49859 -16.03817 -15.91925 -15.46167 -14.90975 -14.76989 -14.52474 -14.13124 -13.84093 -13.48098 -13.29071 -13.27053 -12.84699 -12.65500 -12.54317 -12.22282 -12.16547 -11.96749 -11.81273 -11.52569 -11.37451 -11.15116 -10.93617 -10.82506 -10.59208 -10.46255 -10.29318 -10.02720 -9.92128 -9.83959 -9.62952 -9.05902 -8.82415 -8.59902 -8.34108 -6.89703 -5.78519 -3.22647 0.83176 1.20319 2.85291 3.16519 3.35109 3.42312 3.44247 3.52998 3.67126 4.43199 4.51752 4.64557 4.78032 4.84884 4.98479 5.12285 5.20049 5.22449 5.25656 5.30060 5.37340 5.40091 5.48459 5.51061 5.51700 5.57518 5.68787 5.77623 5.84843 5.87957 5.96120 6.14700 6.25906 6.29457 6.30417 6.33394 6.50194 6.63065 6.73640 6.79699 6.82983 7.00547 7.35687 7.67593 7.73946 7.77158 8.27998 8.32131 9.15853 9.78771 10.25713 11.26214 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019812 B = 0.003057 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.948179 B = 9158.597425 C =10140.670718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.394 6.394 3 C 0.097 3.903 4 C -0.037 4.037 5 C -0.107 4.107 6 C -0.102 4.102 7 C -0.129 4.129 8 C -0.087 4.087 9 C -0.120 4.120 10 C 0.566 3.434 11 O -0.540 6.540 12 N -0.604 5.604 13 C 0.100 3.900 14 C -0.154 4.154 15 C 0.173 3.827 16 H 0.079 0.921 17 N -0.587 5.587 18 C 0.161 3.839 19 C -0.260 4.260 20 H 0.073 0.927 21 C 0.002 3.998 22 N -0.905 5.905 23 Si 0.907 3.093 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.086 3.914 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.133 0.867 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.029 0.971 42 H 0.000 1.000 43 H 0.049 0.951 44 H 0.253 0.747 45 H 0.074 0.926 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.143 -20.231 -3.821 21.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.313 6.313 3 C 0.022 3.978 4 C -0.038 4.038 5 C -0.125 4.125 6 C -0.120 4.120 7 C -0.147 4.147 8 C -0.106 4.106 9 C -0.123 4.123 10 C 0.354 3.646 11 O -0.419 6.419 12 N -0.337 5.337 13 C -0.023 4.023 14 C -0.194 4.194 15 C 0.063 3.937 16 H 0.097 0.903 17 N -0.307 5.307 18 C 0.017 3.983 19 C -0.389 4.389 20 H 0.091 0.909 21 C -0.196 4.196 22 N -0.550 5.550 23 Si 0.737 3.263 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.216 1.216 27 C -0.038 4.038 28 H 0.062 0.938 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.155 0.845 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.047 0.953 42 H 0.019 0.981 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.093 0.907 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.510 -20.167 -4.122 21.308 hybrid contribution -0.029 1.228 0.141 1.236 sum 5.481 -18.939 -3.981 20.113 Atomic orbital electron populations 1.22726 0.80552 1.02566 1.00469 1.87748 1.20028 1.27883 1.95672 1.21400 0.89478 0.84357 1.02614 1.19665 0.94309 0.92476 0.97325 1.20965 0.94565 0.97297 0.99632 1.21342 0.93717 0.98749 0.98242 1.21108 1.00103 0.92175 1.01280 1.21403 0.93130 0.98428 0.97604 1.19696 0.93996 0.92635 1.05951 1.17994 0.83672 0.83389 0.79517 1.90754 1.24341 1.83081 1.43729 1.48474 1.32345 1.09642 1.43254 1.22470 0.88521 0.99968 0.91377 1.23374 1.02312 0.95351 0.98351 1.21342 0.93098 0.89117 0.90188 0.90270 1.43979 1.34719 1.02871 1.49144 1.20824 0.89702 0.92791 0.94974 1.19305 0.97342 0.81510 1.40727 0.90919 1.24981 0.94886 0.98110 1.01667 1.70118 1.00522 1.33243 1.51126 0.86146 0.77932 0.84603 0.77605 1.20289 1.21729 1.21585 1.22978 1.01251 0.78567 1.01047 0.93802 0.89602 0.93880 0.91779 0.89622 0.84519 0.85651 0.85469 0.84942 0.91062 0.91521 0.90253 0.90362 0.95305 0.98110 0.93231 0.93680 0.90742 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -4.87 9.19 -35.23 -0.32 -5.20 16 3 C 0.10 1.34 4.88 36.00 0.18 1.52 16 4 C -0.04 -0.49 5.91 -104.23 -0.62 -1.11 16 5 C -0.11 -1.20 9.37 -39.64 -0.37 -1.57 16 6 C -0.10 -0.95 10.04 -39.49 -0.40 -1.35 16 7 C -0.13 -1.19 10.03 -39.64 -0.40 -1.59 16 8 C -0.09 -0.98 8.22 -39.18 -0.32 -1.30 16 9 C -0.12 -1.67 5.37 -104.96 -0.56 -2.23 16 10 C 0.57 9.58 7.18 -12.33 -0.09 9.49 16 11 O -0.54 -10.81 15.07 5.32 0.08 -10.73 16 12 N -0.60 -9.88 3.33 -171.63 -0.57 -10.45 16 13 C 0.10 1.31 5.25 -2.53 -0.01 1.29 16 14 C -0.15 -2.37 6.59 -24.58 -0.16 -2.53 16 15 C 0.17 3.33 3.45 -66.10 -0.23 3.10 16 16 H 0.08 1.48 7.90 -51.93 -0.41 1.07 16 17 N -0.59 -14.08 2.94 -171.39 -0.50 -14.59 16 18 C 0.16 3.89 7.73 59.85 0.46 4.36 16 19 C -0.26 -6.87 9.67 -15.06 -0.15 -7.02 16 20 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 21 C 0.00 0.06 5.10 -17.43 -0.09 -0.03 16 22 N -0.91 -25.99 10.50 55.49 0.58 -25.41 16 23 Si 0.91 21.41 29.58 -169.99 -5.03 16.38 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.09 1.65 6.51 -3.06 -0.02 1.63 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.09 1.30 6.93 -51.93 -0.36 0.94 16 33 H 0.14 1.43 7.00 -52.49 -0.37 1.06 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.13 1.32 5.93 -52.48 -0.31 1.00 16 37 H 0.07 0.84 7.34 -51.93 -0.38 0.46 16 38 H 0.07 0.73 6.95 -51.93 -0.36 0.37 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.08 1.31 6.14 -51.93 -0.32 0.99 16 41 H 0.03 0.77 7.38 -51.93 -0.38 0.38 16 42 H 0.00 0.01 6.12 -51.93 -0.32 -0.31 16 43 H 0.05 1.29 7.05 -51.93 -0.37 0.93 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.07 1.65 7.06 -51.93 -0.37 1.28 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 365.09 15.07 5.50 5.50 Total: -1.00 -31.34 365.09 -8.79 -40.13 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -6.87 Total: 0.28 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -1.66 Total: 4.08 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.49 Total: -50.44 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.24 Total: -15.93 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.34 -8.79 -40.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971855577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.985 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds