Wall clock time and date at job start Tue Mar 31 2020 12:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 114.00377 * 2 1 4 4 C 1.50692 * 109.47522 * 180.02562 * 3 2 1 5 5 C 1.37981 * 120.07197 * 359.97390 * 4 3 2 6 6 C 1.38342 * 120.14406 * 179.97438 * 5 4 3 7 7 C 1.38376 * 120.29530 * 0.02747 * 6 5 4 8 8 C 1.37938 * 120.14265 * 359.73966 * 7 6 5 9 9 C 1.39548 * 120.07561 * 180.02562 * 4 3 2 10 10 C 1.47852 * 120.14455 * 359.95319 * 9 4 3 11 11 O 1.21547 * 119.99709 * 322.16888 * 10 9 4 12 12 N 1.34776 * 119.99976 * 142.17064 * 10 9 4 13 13 C 1.47428 * 125.64916 * 354.66808 * 12 10 9 14 14 C 1.54906 * 104.82987 * 204.09559 * 13 12 10 15 15 C 1.55159 * 101.58551 * 322.99087 * 14 13 12 16 16 H 1.08999 * 110.87030 * 277.07423 * 15 14 13 17 17 N 1.46492 * 110.72215 * 153.86553 * 15 14 13 18 18 C 1.46503 * 120.00215 * 305.02694 * 17 15 14 19 19 C 1.36941 * 120.00044 * 125.02730 * 17 15 14 20 20 H 1.08005 * 119.99711 * 341.71564 * 19 17 15 21 21 C 1.38810 * 120.00059 * 161.44844 * 19 17 15 22 22 N 1.31614 * 119.99660 * 346.04866 * 21 19 17 23 23 Si 1.86802 * 120.00018 * 166.05725 * 21 19 17 24 24 H 1.48495 * 109.46860 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47282 * 119.99363 * 23 21 19 26 26 H 1.48504 * 109.46847 * 239.99540 * 23 21 19 27 27 C 1.47020 * 125.64686 * 174.62871 * 12 10 9 28 28 H 1.08995 * 109.46694 * 60.00054 * 1 2 3 29 29 H 1.08998 * 109.47164 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47029 * 300.00134 * 1 2 3 31 31 H 1.08998 * 109.46715 * 59.99643 * 3 2 1 32 32 H 1.09005 * 109.46555 * 300.00054 * 3 2 1 33 33 H 1.08000 * 119.92985 * 0.03114 * 5 4 3 34 34 H 1.07998 * 119.85308 * 180.02562 * 6 5 4 35 35 H 1.07993 * 119.93116 * 180.02562 * 7 6 5 36 36 H 1.08007 * 120.07737 * 180.27481 * 8 7 6 37 37 H 1.08998 * 110.36488 * 322.93608 * 13 12 10 38 38 H 1.08997 * 110.36332 * 85.14777 * 13 12 10 39 39 H 1.09002 * 111.00423 * 204.91935 * 14 13 12 40 40 H 1.08996 * 111.00832 * 81.06830 * 14 13 12 41 41 H 1.09004 * 109.46574 * 264.97420 * 18 17 15 42 42 H 1.09000 * 109.46967 * 24.97142 * 18 17 15 43 43 H 1.08999 * 109.47230 * 144.98118 * 18 17 15 44 44 H 0.97005 * 119.99569 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.87895 * 59.55628 * 27 12 10 46 46 H 1.08995 * 109.88544 * 298.39324 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1075 -0.0585 -0.0006 6 6 5.4865 -0.1695 -0.0017 7 6 6.2781 0.9655 -0.0023 8 6 5.6960 2.2160 -0.0072 9 6 4.3051 2.3350 -0.0002 10 6 3.6744 3.6723 -0.0002 11 8 2.6633 3.8673 -0.6461 12 7 4.2205 4.6749 0.7160 13 6 5.3735 4.5516 1.6264 14 6 5.2194 5.7275 2.6230 15 6 4.6690 6.8474 1.7008 16 1 5.4795 7.3454 1.1686 17 7 3.8857 7.8157 2.4720 18 6 2.7643 7.3596 3.2971 19 6 4.2016 9.1472 2.4216 20 1 5.1745 9.4585 2.0709 21 6 3.2694 10.0970 2.8162 22 7 2.0083 9.7553 2.9743 23 14 3.8048 11.8603 3.1223 24 1 5.2641 11.9841 2.8770 25 1 3.0695 12.7673 2.2047 26 1 3.5065 12.2310 4.5290 27 6 3.7655 6.0730 0.7181 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8901 33 1 3.4954 -0.9483 -0.0006 34 1 5.9472 -1.1463 -0.0020 35 1 7.3540 0.8720 -0.0036 36 1 6.3149 3.1011 -0.0122 37 1 5.3390 3.5991 2.1552 38 1 6.3068 4.6427 1.0709 39 1 6.1832 6.0091 3.0470 40 1 4.5051 5.4825 3.4090 41 1 1.8366 7.4517 2.7322 42 1 2.9184 6.3170 3.5752 43 1 2.7036 7.9708 4.1976 44 1 1.3568 10.4192 3.2497 45 1 2.7283 6.1247 1.0489 46 1 3.8591 6.4948 -0.2826 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971855577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:30 Heat of formation + Delta-G solvation = -34.288465 kcal Electronic energy + Delta-G solvation = -27008.916990 eV Core-core repulsion = 23285.084500 eV Total energy + Delta-G solvation = -3723.832490 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.65429 -40.00366 -38.77125 -38.50485 -36.61980 -33.65153 -33.02312 -32.27367 -31.16425 -29.38489 -28.33600 -28.10165 -26.50521 -25.72570 -24.41168 -23.37455 -22.51937 -20.91754 -20.57128 -18.97949 -18.43519 -17.60948 -17.54429 -17.39449 -16.97472 -16.80308 -16.46622 -15.77717 -15.59418 -15.33107 -15.06128 -15.01474 -14.76048 -14.51138 -14.19662 -14.02059 -13.70435 -13.62545 -13.34935 -13.21182 -13.02761 -12.80664 -12.68561 -12.49013 -12.40778 -12.32415 -12.22479 -12.07091 -11.98465 -11.77565 -11.45804 -11.04849 -10.84729 -10.64950 -9.96063 -9.75704 -9.63484 -8.88787 -7.84498 -5.30920 -0.09006 0.38063 1.47577 1.48711 1.59356 1.65440 1.90144 2.50901 2.60823 2.77681 3.27330 3.41942 3.55242 3.75730 3.80438 3.95385 4.05166 4.14629 4.23304 4.25735 4.31882 4.33984 4.40701 4.46554 4.49312 4.54433 4.58980 4.63580 4.75056 4.77018 4.84271 4.86354 4.99180 5.06643 5.17120 5.18902 5.29684 5.37294 5.41159 5.44159 5.52496 5.62051 5.69499 5.95713 6.05413 6.27896 6.46184 6.99324 7.11220 7.82461 8.25956 9.19443 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.019812 B = 0.003057 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.948179 B = 9158.597425 C =10140.670718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.106 3.894 4 C -0.060 4.060 5 C -0.112 4.112 6 C -0.089 4.089 7 C -0.117 4.117 8 C -0.085 4.085 9 C -0.141 4.141 10 C 0.561 3.439 11 O -0.586 6.586 12 N -0.605 5.605 13 C 0.105 3.895 14 C -0.141 4.141 15 C 0.167 3.833 16 H 0.089 0.911 17 N -0.602 5.602 18 C 0.183 3.817 19 C -0.262 4.262 20 H 0.084 0.916 21 C -0.058 4.058 22 N -0.943 5.943 23 Si 0.973 3.027 24 H -0.260 1.260 25 H -0.297 1.297 26 H -0.293 1.293 27 C 0.097 3.903 28 H 0.042 0.958 29 H 0.113 0.887 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.142 0.858 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.148 0.852 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.063 0.937 41 H -0.008 1.008 42 H 0.027 0.973 43 H 0.024 0.976 44 H 0.247 0.753 45 H 0.034 0.966 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.137 -22.595 -3.695 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C 0.029 3.971 4 C -0.061 4.061 5 C -0.130 4.130 6 C -0.107 4.107 7 C -0.135 4.135 8 C -0.103 4.103 9 C -0.144 4.144 10 C 0.352 3.648 11 O -0.468 6.468 12 N -0.337 5.337 13 C -0.017 4.017 14 C -0.180 4.180 15 C 0.058 3.942 16 H 0.107 0.893 17 N -0.323 5.323 18 C 0.038 3.962 19 C -0.392 4.392 20 H 0.102 0.898 21 C -0.252 4.252 22 N -0.590 5.590 23 Si 0.801 3.199 24 H -0.184 1.184 25 H -0.225 1.225 26 H -0.220 1.220 27 C -0.028 4.028 28 H 0.061 0.939 29 H 0.131 0.869 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.159 0.841 34 H 0.179 0.821 35 H 0.184 0.816 36 H 0.166 0.834 37 H 0.111 0.889 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.082 0.918 41 H 0.010 0.990 42 H 0.046 0.954 43 H 0.042 0.958 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.566 -22.572 -3.996 24.839 hybrid contribution -1.253 1.820 0.040 2.210 sum 8.313 -20.752 -3.956 22.702 Atomic orbital electron populations 1.22954 0.79261 1.04362 1.00474 1.87730 1.21491 1.26914 1.95600 1.21149 0.90739 0.84609 1.00578 1.19743 0.93719 0.93562 0.99047 1.21115 0.95927 0.96287 0.99629 1.21785 0.92643 1.00648 0.95634 1.21544 1.01995 0.90936 0.99000 1.21623 0.91625 1.00208 0.96886 1.19518 0.95410 0.90477 1.08985 1.18632 0.83096 0.84541 0.78560 1.90724 1.26480 1.83950 1.45613 1.48502 1.33233 1.08159 1.43787 1.22702 0.88455 0.99885 0.90612 1.23251 1.02842 0.94304 0.97627 1.21576 0.92464 0.89389 0.90757 0.89254 1.44169 1.34919 1.03201 1.50040 1.20446 0.88710 0.93687 0.93389 1.19733 0.97536 0.82690 1.39218 0.89829 1.25800 0.94953 1.02058 1.02434 1.70306 1.01600 1.34129 1.52941 0.85115 0.78245 0.79793 0.76737 1.18406 1.22493 1.21963 1.22556 0.99164 0.80897 1.00194 0.93880 0.86859 0.93878 0.93649 0.92095 0.84062 0.82090 0.81632 0.83414 0.88882 0.87893 0.87593 0.91850 0.98990 0.95439 0.95750 0.94411 0.94777 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.40 -9.99 9.19 -148.98 -1.37 -11.35 16 3 C 0.11 3.08 4.88 71.23 0.35 3.43 16 4 C -0.06 -1.58 5.91 -19.61 -0.12 -1.70 16 5 C -0.11 -2.25 9.37 22.23 0.21 -2.04 16 6 C -0.09 -1.24 10.04 22.33 0.22 -1.01 16 7 C -0.12 -1.54 10.03 22.23 0.22 -1.32 16 8 C -0.09 -1.59 8.22 22.53 0.19 -1.40 16 9 C -0.14 -3.78 5.37 -20.09 -0.11 -3.89 16 10 C 0.56 19.38 7.18 86.79 0.62 20.01 16 11 O -0.59 -25.05 15.07 -3.86 -0.06 -25.11 16 12 N -0.60 -19.56 3.33 -815.21 -2.71 -22.27 16 13 C 0.10 2.41 5.25 86.85 0.46 2.87 16 14 C -0.14 -3.99 6.59 31.99 0.21 -3.78 16 15 C 0.17 6.31 3.45 46.18 0.16 6.47 16 16 H 0.09 3.20 7.90 -2.39 -0.02 3.18 16 17 N -0.60 -29.36 2.94 -696.14 -2.05 -31.41 16 18 C 0.18 9.20 7.73 127.77 0.99 10.19 16 19 C -0.26 -13.94 9.67 84.03 0.81 -13.12 16 20 H 0.08 4.18 7.81 -2.91 -0.02 4.16 16 21 C -0.06 -3.22 5.10 84.86 0.43 -2.79 16 22 N -0.94 -56.44 10.50 21.65 0.23 -56.21 16 23 Si 0.97 44.62 29.58 68.60 2.03 46.65 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 26 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 27 C 0.10 3.86 6.51 86.73 0.56 4.42 16 28 H 0.04 0.82 8.14 -2.39 -0.02 0.81 16 29 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.42 16 32 H 0.06 2.03 6.93 -2.38 -0.02 2.02 16 33 H 0.14 2.66 7.00 -2.91 -0.02 2.64 16 34 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 35 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 36 H 0.15 2.23 5.93 -2.91 -0.02 2.21 16 37 H 0.09 1.83 7.34 -2.39 -0.02 1.81 16 38 H 0.10 1.71 6.95 -2.39 -0.02 1.69 16 39 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.06 2.01 6.14 -2.39 -0.01 1.99 16 41 H -0.01 -0.47 7.38 -2.38 -0.02 -0.49 16 42 H 0.03 1.20 6.12 -2.39 -0.01 1.19 16 43 H 0.02 1.31 7.05 -2.39 -0.02 1.29 16 44 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 45 H 0.03 1.61 7.06 -2.39 -0.02 1.60 16 46 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -73.43 365.09 3.51 -69.93 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.98 Total: 11.71 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: 6.46 Total: 18.07 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -4.53 Total: -109.89 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -1.43 Total: -36.46 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -73.43 3.51 -69.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971855577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.637 kcal (2) G-P(sol) polarization free energy of solvation -73.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds