Wall clock time and date at job start Tue Mar 31 2020 12:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42893 * 114.00192 * 2 1 4 4 C 1.50707 * 109.46841 * 180.02562 * 3 2 1 5 5 C 1.37979 * 120.07684 * 0.02562 * 4 3 2 6 6 C 1.38333 * 120.14439 * 180.02562 * 5 4 3 7 7 C 1.38377 * 120.29504 * 359.97438 * 6 5 4 8 8 C 1.37938 * 120.14675 * 0.02562 * 7 6 5 9 9 C 1.39564 * 120.06890 * 180.27922 * 4 3 2 10 10 C 1.47847 * 120.14763 * 359.97438 * 9 4 3 11 11 O 1.21551 * 119.99958 * 301.89765 * 10 9 4 12 12 N 1.34770 * 119.99771 * 121.89986 * 10 9 4 13 13 C 1.48217 * 119.97047 * 183.93065 * 12 10 9 14 14 C 1.47713 * 110.06713 * 102.59200 * 13 12 10 15 15 C 1.53793 * 111.83557 * 58.37036 * 14 13 12 16 16 N 1.43463 * 107.96053 * 281.59759 * 15 14 13 17 17 C 1.36936 * 118.93859 * 273.63249 * 16 15 14 18 18 H 1.07999 * 120.00435 * 33.24133 * 17 16 15 19 19 C 1.38815 * 119.99986 * 213.23748 * 17 16 15 20 20 N 1.31621 * 119.99927 * 357.71605 * 19 17 16 21 21 Si 1.86796 * 120.00350 * 177.71413 * 19 17 16 22 22 H 1.48510 * 109.47042 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47440 * 119.99623 * 21 19 17 24 24 H 1.48493 * 109.47606 * 240.00210 * 21 19 17 25 25 C 1.48855 * 122.11832 * 93.65193 * 16 15 14 26 26 C 1.43621 * 119.97336 * 4.20555 * 12 10 9 27 27 H 1.09004 * 109.47042 * 299.99583 * 1 2 3 28 28 H 1.09000 * 109.47130 * 59.99472 * 1 2 3 29 29 H 1.09000 * 109.47650 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47194 * 60.00611 * 3 2 1 31 31 H 1.09002 * 109.47488 * 299.99835 * 3 2 1 32 32 H 1.07995 * 119.92659 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.85079 * 179.97438 * 6 5 4 34 34 H 1.08006 * 119.93000 * 180.02562 * 7 6 5 35 35 H 1.07995 * 120.07462 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.32791 * 222.78576 * 13 12 10 37 37 H 1.09005 * 109.32045 * 342.24616 * 13 12 10 38 38 H 1.09002 * 109.06650 * 297.72500 * 14 13 12 39 39 H 1.09007 * 108.89164 * 178.89878 * 14 13 12 40 40 H 1.08998 * 109.76402 * 161.98434 * 15 14 13 41 41 H 1.08997 * 109.80549 * 41.24177 * 15 14 13 42 42 H 0.96998 * 119.99932 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.48031 * 200.61550 * 25 16 15 44 44 H 1.09007 * 109.48732 * 80.59635 * 25 16 15 45 45 H 1.09001 * 108.87520 * 31.42180 * 26 12 10 46 46 H 1.08998 * 108.87582 * 149.96153 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1862 -0.0006 5 6 4.1075 -0.0587 -0.0016 6 6 5.4864 -0.1697 -0.0017 7 6 6.2780 0.9653 -0.0013 8 6 5.6960 2.2159 -0.0003 9 6 4.3051 2.3350 0.0051 10 6 3.6744 3.6722 0.0113 11 8 2.9124 3.9889 -0.8811 12 7 3.9445 4.5400 1.0065 13 6 3.2462 5.8462 1.0597 14 6 2.1784 5.8089 2.0797 15 6 2.7316 5.4726 3.4748 16 7 2.9593 4.0573 3.5309 17 6 1.9254 3.2334 3.8879 18 1 0.9123 3.4885 3.6141 19 6 2.1794 2.0702 4.6016 20 7 3.4180 1.7362 4.8963 21 14 0.7636 0.9791 5.1439 22 1 -0.5203 1.5728 4.6915 23 1 0.9226 -0.3714 4.5470 24 1 0.7627 0.8687 6.6247 25 6 4.2835 3.4556 3.2141 26 6 4.9131 4.2007 2.0112 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8463 -0.8900 32 1 3.4954 -0.9484 -0.0024 33 1 5.9471 -1.1465 -0.0021 34 1 7.3540 0.8718 -0.0017 35 1 6.3150 3.1009 -0.0004 36 1 3.9621 6.6280 1.3133 37 1 2.8107 6.0624 0.0840 38 1 1.4432 5.0551 1.7981 39 1 1.6912 6.7834 2.1164 40 1 2.0077 5.7599 4.2373 41 1 3.6693 6.0037 3.6381 42 1 3.5954 0.9236 5.3954 43 1 4.1536 2.4031 2.9622 44 1 4.9395 3.5437 4.0802 45 1 5.6775 3.5653 1.5638 46 1 5.3826 5.1159 2.3717 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981536455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:52 Heat of formation + Delta-G solvation = -14.383478 kcal Electronic energy + Delta-G solvation = -29125.182905 eV Core-core repulsion = 25402.213560 eV Total energy + Delta-G solvation = -3722.969345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.29819 -38.46595 -37.18791 -36.83377 -34.23422 -32.84898 -31.74912 -31.00566 -30.45821 -27.61759 -27.03064 -25.61159 -25.03000 -23.73358 -23.48679 -21.65660 -21.03784 -19.74349 -18.78194 -17.18686 -16.38877 -16.32685 -16.16041 -15.77134 -15.53135 -15.18216 -14.58824 -14.46404 -14.15414 -14.02988 -13.75395 -13.39436 -13.08329 -13.04622 -12.78964 -12.48099 -12.32492 -12.17706 -11.97883 -11.62525 -11.45167 -11.33956 -10.95058 -10.88014 -10.85305 -10.73755 -10.54340 -10.23091 -10.16092 -9.87739 -9.68240 -9.55151 -9.34022 -8.58523 -8.46729 -8.33034 -8.00223 -6.56792 -5.79922 -3.30204 1.37723 1.65199 3.05614 3.35002 3.42557 3.43744 3.53269 3.96851 4.07866 4.48176 4.89053 5.07759 5.17837 5.25414 5.36164 5.42833 5.48162 5.52241 5.60154 5.68887 5.73083 5.78487 5.80850 5.84896 5.87824 5.92863 5.99146 6.10980 6.12130 6.20531 6.29198 6.35986 6.45259 6.51974 6.56747 6.72170 6.74385 6.82887 6.92913 7.05422 7.17847 7.43479 7.44101 7.62821 7.80471 7.97012 8.50313 8.60480 9.24188 9.88142 10.37512 11.27094 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009198 B = 0.007818 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.506029 B = 3580.541463 C = 4684.892383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.389 6.389 3 C 0.096 3.904 4 C -0.030 4.030 5 C -0.100 4.100 6 C -0.106 4.106 7 C -0.127 4.127 8 C -0.093 4.093 9 C -0.107 4.107 10 C 0.566 3.434 11 O -0.554 6.554 12 N -0.574 5.574 13 C 0.128 3.872 14 C -0.169 4.169 15 C 0.163 3.837 16 N -0.591 5.591 17 C -0.257 4.257 18 H 0.060 0.940 19 C 0.016 3.984 20 N -0.903 5.903 21 Si 0.893 3.107 22 H -0.279 1.279 23 H -0.287 1.287 24 H -0.289 1.289 25 C 0.168 3.832 26 C 0.065 3.935 27 H 0.044 0.956 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.134 0.866 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.045 0.955 41 H 0.032 0.968 42 H 0.253 0.747 43 H 0.082 0.918 44 H 0.038 0.962 45 H 0.075 0.925 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.883 0.931 -8.651 9.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C 0.020 3.980 4 C -0.031 4.031 5 C -0.118 4.118 6 C -0.124 4.124 7 C -0.145 4.145 8 C -0.111 4.111 9 C -0.110 4.110 10 C 0.354 3.646 11 O -0.434 6.434 12 N -0.304 5.304 13 C 0.006 3.994 14 C -0.210 4.210 15 C 0.034 3.966 16 N -0.313 5.313 17 C -0.387 4.387 18 H 0.077 0.923 19 C -0.183 4.183 20 N -0.547 5.547 21 Si 0.723 3.277 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.215 1.215 25 C 0.043 3.957 26 C -0.060 4.060 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.152 0.848 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.100 0.900 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.679 0.826 -8.987 9.746 hybrid contribution -0.907 -0.430 0.610 1.175 sum 2.772 0.396 -8.377 8.832 Atomic orbital electron populations 1.22697 0.80988 1.02342 1.00243 1.87746 1.19695 1.27780 1.95615 1.21367 0.89754 0.84693 1.02174 1.19515 0.94104 0.92387 0.97067 1.20902 0.94529 0.97293 0.99104 1.21221 0.93703 0.98501 0.99011 1.20975 0.99706 0.92217 1.01561 1.21023 0.92805 0.97910 0.99358 1.19529 0.93949 0.92805 1.04694 1.18274 0.80817 0.83993 0.81547 1.90700 1.37563 1.77766 1.37382 1.47324 1.41148 1.17003 1.24916 1.20716 0.94984 0.83356 1.00322 1.21993 0.98882 1.00702 0.99441 1.20286 0.97246 0.86270 0.92750 1.43595 1.08839 1.00004 1.78846 1.19097 0.88028 1.03373 1.28212 0.92253 1.25193 0.95998 0.99508 0.97583 1.69935 1.17277 1.25155 1.42320 0.86361 0.82266 0.80682 0.78435 1.20366 1.21394 1.21532 1.21943 0.85696 0.97269 0.90815 1.22546 0.91300 1.00573 0.91614 0.93690 0.94245 0.89844 0.90445 0.91108 0.84827 0.85987 0.85833 0.85592 0.91969 0.90384 0.91582 0.92664 0.93634 0.94919 0.93637 0.89959 0.94394 0.90674 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.39 -7.04 9.18 -35.23 -0.32 -7.37 16 3 C 0.10 1.86 5.21 36.01 0.19 2.05 16 4 C -0.03 -0.56 5.91 -104.22 -0.62 -1.18 16 5 C -0.10 -1.69 9.37 -39.64 -0.37 -2.07 16 6 C -0.11 -1.52 10.04 -39.50 -0.40 -1.92 16 7 C -0.13 -1.74 10.03 -39.64 -0.40 -2.13 16 8 C -0.09 -1.42 7.71 -39.18 -0.30 -1.72 16 9 C -0.11 -1.96 5.00 -104.96 -0.53 -2.49 16 10 C 0.57 11.12 6.48 -12.33 -0.08 11.04 16 11 O -0.55 -12.00 15.39 5.32 0.08 -11.92 16 12 N -0.57 -10.53 2.45 -177.47 -0.43 -10.96 16 13 C 0.13 2.13 5.76 -5.65 -0.03 2.10 16 14 C -0.17 -3.02 5.65 -28.87 -0.16 -3.18 16 15 C 0.16 3.26 5.63 -5.24 -0.03 3.23 16 16 N -0.59 -14.00 2.53 -172.00 -0.44 -14.44 16 17 C -0.26 -6.82 9.21 -15.06 -0.14 -6.96 16 18 H 0.06 1.60 7.83 -52.49 -0.41 1.19 16 19 C 0.02 0.44 5.27 -17.43 -0.09 0.35 16 20 N -0.90 -25.19 10.59 55.49 0.59 -24.60 16 21 Si 0.89 21.63 29.55 -169.99 -5.02 16.61 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 C 0.17 3.79 5.14 -1.75 -0.01 3.78 16 26 C 0.06 1.16 5.02 -4.58 -0.02 1.13 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 31 H 0.07 1.36 7.36 -51.93 -0.38 0.98 16 32 H 0.13 2.17 7.00 -52.49 -0.37 1.81 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.13 1.66 7.06 -52.49 -0.37 1.29 16 36 H 0.06 0.88 8.05 -51.93 -0.42 0.47 16 37 H 0.08 1.32 7.09 -51.93 -0.37 0.95 16 38 H 0.07 1.39 7.91 -51.93 -0.41 0.98 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.93 8.02 -51.93 -0.42 0.52 16 41 H 0.03 0.60 7.59 -51.93 -0.39 0.21 16 42 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 43 H 0.08 2.13 6.62 -51.93 -0.34 1.78 16 44 H 0.04 0.92 7.96 -51.92 -0.41 0.51 16 45 H 0.08 1.22 4.14 -51.93 -0.22 1.01 16 46 H 0.06 0.95 7.72 -51.93 -0.40 0.55 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -30.76 362.95 -8.96 -39.72 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.01 Total: 3.85 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: -1.88 Total: 3.64 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.28 Total: -50.00 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.24 Total: -19.29 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.76 -8.96 -39.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981536455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.340 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds