Wall clock time and date at job start Tue Mar 31 2020 12:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42893 * 114.00192 * 2 1 4 4 C 1.50707 * 109.46841 * 180.02562 * 3 2 1 5 5 C 1.37979 * 120.07684 * 0.02562 * 4 3 2 6 6 C 1.38333 * 120.14439 * 180.02562 * 5 4 3 7 7 C 1.38377 * 120.29504 * 359.97438 * 6 5 4 8 8 C 1.37938 * 120.14675 * 0.02562 * 7 6 5 9 9 C 1.39564 * 120.06890 * 180.27922 * 4 3 2 10 10 C 1.47847 * 120.14763 * 359.97438 * 9 4 3 11 11 O 1.21551 * 119.99958 * 301.89765 * 10 9 4 12 12 N 1.34770 * 119.99771 * 121.89986 * 10 9 4 13 13 C 1.48217 * 119.97047 * 183.93065 * 12 10 9 14 14 C 1.47713 * 110.06713 * 102.59200 * 13 12 10 15 15 C 1.53793 * 111.83557 * 58.37036 * 14 13 12 16 16 N 1.43463 * 107.96053 * 281.59759 * 15 14 13 17 17 C 1.36936 * 118.93859 * 273.63249 * 16 15 14 18 18 H 1.07999 * 120.00435 * 33.24133 * 17 16 15 19 19 C 1.38815 * 119.99986 * 213.23748 * 17 16 15 20 20 N 1.31621 * 119.99927 * 357.71605 * 19 17 16 21 21 Si 1.86796 * 120.00350 * 177.71413 * 19 17 16 22 22 H 1.48510 * 109.47042 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47440 * 119.99623 * 21 19 17 24 24 H 1.48493 * 109.47606 * 240.00210 * 21 19 17 25 25 C 1.48855 * 122.11832 * 93.65193 * 16 15 14 26 26 C 1.43621 * 119.97336 * 4.20555 * 12 10 9 27 27 H 1.09004 * 109.47042 * 299.99583 * 1 2 3 28 28 H 1.09000 * 109.47130 * 59.99472 * 1 2 3 29 29 H 1.09000 * 109.47650 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47194 * 60.00611 * 3 2 1 31 31 H 1.09002 * 109.47488 * 299.99835 * 3 2 1 32 32 H 1.07995 * 119.92659 * 0.02562 * 5 4 3 33 33 H 1.08000 * 119.85079 * 179.97438 * 6 5 4 34 34 H 1.08006 * 119.93000 * 180.02562 * 7 6 5 35 35 H 1.07995 * 120.07462 * 180.02562 * 8 7 6 36 36 H 1.08996 * 109.32791 * 222.78576 * 13 12 10 37 37 H 1.09005 * 109.32045 * 342.24616 * 13 12 10 38 38 H 1.09002 * 109.06650 * 297.72500 * 14 13 12 39 39 H 1.09007 * 108.89164 * 178.89878 * 14 13 12 40 40 H 1.08998 * 109.76402 * 161.98434 * 15 14 13 41 41 H 1.08997 * 109.80549 * 41.24177 * 15 14 13 42 42 H 0.96998 * 119.99932 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.48031 * 200.61550 * 25 16 15 44 44 H 1.09007 * 109.48732 * 80.59635 * 25 16 15 45 45 H 1.09001 * 108.87520 * 31.42180 * 26 12 10 46 46 H 1.08998 * 108.87582 * 149.96153 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1862 -0.0006 5 6 4.1075 -0.0587 -0.0016 6 6 5.4864 -0.1697 -0.0017 7 6 6.2780 0.9653 -0.0013 8 6 5.6960 2.2159 -0.0003 9 6 4.3051 2.3350 0.0051 10 6 3.6744 3.6722 0.0113 11 8 2.9124 3.9889 -0.8811 12 7 3.9445 4.5400 1.0065 13 6 3.2462 5.8462 1.0597 14 6 2.1784 5.8089 2.0797 15 6 2.7316 5.4726 3.4748 16 7 2.9593 4.0573 3.5309 17 6 1.9254 3.2334 3.8879 18 1 0.9123 3.4885 3.6141 19 6 2.1794 2.0702 4.6016 20 7 3.4180 1.7362 4.8963 21 14 0.7636 0.9791 5.1439 22 1 -0.5203 1.5728 4.6915 23 1 0.9226 -0.3714 4.5470 24 1 0.7627 0.8687 6.6247 25 6 4.2835 3.4556 3.2141 26 6 4.9131 4.2007 2.0112 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6887 1.8463 0.8901 31 1 1.6886 1.8463 -0.8900 32 1 3.4954 -0.9484 -0.0024 33 1 5.9471 -1.1465 -0.0021 34 1 7.3540 0.8718 -0.0017 35 1 6.3150 3.1009 -0.0004 36 1 3.9621 6.6280 1.3133 37 1 2.8107 6.0624 0.0840 38 1 1.4432 5.0551 1.7981 39 1 1.6912 6.7834 2.1164 40 1 2.0077 5.7599 4.2373 41 1 3.6693 6.0037 3.6381 42 1 3.5954 0.9236 5.3954 43 1 4.1536 2.4031 2.9622 44 1 4.9395 3.5437 4.0802 45 1 5.6775 3.5653 1.5638 46 1 5.3826 5.1159 2.3717 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981536455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:52 Heat of formation + Delta-G solvation = -32.087087 kcal Electronic energy + Delta-G solvation = -29125.950591 eV Core-core repulsion = 25402.213560 eV Total energy + Delta-G solvation = -3723.737032 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.71150 -39.84787 -38.59211 -38.42319 -35.96053 -34.42324 -33.03993 -32.80480 -31.82782 -29.28666 -28.36615 -27.22094 -26.43298 -25.49407 -24.93131 -23.03083 -22.39745 -21.46245 -20.18147 -18.86832 -18.02156 -17.77685 -17.56946 -17.21334 -17.00453 -16.82252 -16.13292 -15.92401 -15.61451 -15.49660 -15.34836 -14.91096 -14.65174 -14.48468 -14.19428 -13.93425 -13.83485 -13.64467 -13.44767 -13.20336 -12.95532 -12.87212 -12.67559 -12.50767 -12.40557 -12.26456 -12.07105 -11.98269 -11.73677 -11.66095 -11.43549 -10.96525 -10.82624 -10.50428 -9.86786 -9.63482 -9.49076 -8.50768 -7.85385 -5.36489 0.11103 0.42064 1.36947 1.40166 1.46848 1.57393 2.16686 2.47194 2.61229 2.81627 3.30316 3.51699 3.76816 3.79048 4.01564 4.09128 4.13671 4.21306 4.25283 4.28668 4.33233 4.42693 4.45601 4.51382 4.56115 4.58827 4.61557 4.69170 4.73753 4.85742 4.88399 4.93103 5.04148 5.07152 5.24424 5.33635 5.38188 5.45453 5.48237 5.53676 5.63159 5.79207 5.81450 6.00327 6.04694 6.45122 6.47829 7.12274 7.22331 7.97300 8.37946 9.17657 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.009198 B = 0.007818 C = 0.005975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3043.506029 B = 3580.541463 C = 4684.892383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.112 3.888 4 C -0.064 4.064 5 C -0.115 4.115 6 C -0.101 4.101 7 C -0.115 4.115 8 C -0.094 4.094 9 C -0.132 4.132 10 C 0.561 3.439 11 O -0.584 6.584 12 N -0.575 5.575 13 C 0.124 3.876 14 C -0.154 4.154 15 C 0.159 3.841 16 N -0.605 5.605 17 C -0.258 4.258 18 H 0.045 0.955 19 C -0.028 4.028 20 N -0.921 5.921 21 Si 0.940 3.060 22 H -0.275 1.275 23 H -0.293 1.293 24 H -0.286 1.286 25 C 0.179 3.821 26 C 0.076 3.924 27 H 0.029 0.971 28 H 0.055 0.945 29 H 0.113 0.887 30 H 0.034 0.966 31 H 0.062 0.938 32 H 0.132 0.868 33 H 0.157 0.843 34 H 0.167 0.833 35 H 0.152 0.848 36 H 0.102 0.898 37 H 0.075 0.925 38 H 0.023 0.977 39 H 0.088 0.912 40 H 0.036 0.964 41 H 0.059 0.941 42 H 0.248 0.752 43 H 0.043 0.957 44 H 0.018 0.982 45 H 0.095 0.905 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.011 1.454 -9.271 11.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C 0.036 3.964 4 C -0.065 4.065 5 C -0.133 4.133 6 C -0.119 4.119 7 C -0.133 4.133 8 C -0.112 4.112 9 C -0.134 4.134 10 C 0.350 3.650 11 O -0.466 6.466 12 N -0.304 5.304 13 C 0.003 3.997 14 C -0.195 4.195 15 C 0.032 3.968 16 N -0.328 5.328 17 C -0.389 4.389 18 H 0.062 0.938 19 C -0.224 4.224 20 N -0.567 5.567 21 Si 0.770 3.230 22 H -0.200 1.200 23 H -0.220 1.220 24 H -0.213 1.213 25 C 0.054 3.946 26 C -0.049 4.049 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.131 0.869 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.149 0.851 33 H 0.175 0.825 34 H 0.185 0.815 35 H 0.169 0.831 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.042 0.958 39 H 0.106 0.894 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.036 0.964 45 H 0.113 0.887 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.798 1.381 -9.604 11.304 hybrid contribution -1.600 -0.592 0.786 1.878 sum 4.199 0.789 -8.818 9.799 Atomic orbital electron populations 1.22946 0.79457 1.04315 1.00292 1.87730 1.21470 1.27057 1.95531 1.21035 0.91061 0.84709 0.99595 1.19655 0.93584 0.93796 0.99487 1.21048 0.96115 0.96362 0.99806 1.21660 0.92538 1.00633 0.97066 1.21489 1.01798 0.91046 0.98956 1.21383 0.91544 0.99872 0.98414 1.19641 0.95488 0.91815 1.06503 1.18610 0.80389 0.84597 0.81421 1.90665 1.38843 1.78439 1.38675 1.47446 1.41157 1.17390 1.24374 1.20886 0.95488 0.83615 0.99707 1.21800 0.98452 1.01006 0.98277 1.20447 0.98337 0.84423 0.93617 1.43805 1.08528 1.01310 1.79147 1.19169 0.88368 1.03913 1.27430 0.93750 1.25685 0.97669 1.00719 0.98354 1.70073 1.18225 1.25285 1.43103 0.85608 0.80506 0.79035 0.77886 1.19990 1.21978 1.21289 1.21646 0.85001 0.95927 0.92040 1.22383 0.90958 1.01800 0.89718 0.95189 0.92660 0.86895 0.94745 0.91976 0.85057 0.82539 0.81527 0.83073 0.88003 0.90696 0.95804 0.89390 0.94557 0.92323 0.94219 0.93874 0.96380 0.88704 0.89129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.03 16 2 O -0.40 -15.09 9.18 -148.98 -1.37 -16.46 16 3 C 0.11 4.65 5.21 71.24 0.37 5.03 16 4 C -0.06 -2.51 5.91 -19.60 -0.12 -2.63 16 5 C -0.12 -3.88 9.37 22.23 0.21 -3.68 16 6 C -0.10 -2.65 10.04 22.33 0.22 -2.42 16 7 C -0.12 -2.74 10.03 22.23 0.22 -2.52 16 8 C -0.09 -2.66 7.71 22.53 0.17 -2.49 16 9 C -0.13 -4.84 5.00 -20.09 -0.10 -4.94 16 10 C 0.56 22.19 6.48 86.79 0.56 22.76 16 11 O -0.58 -25.95 15.39 -3.88 -0.06 -26.01 16 12 N -0.57 -20.42 2.45 -833.66 -2.04 -22.46 16 13 C 0.12 3.88 5.76 84.39 0.49 4.37 16 14 C -0.15 -5.37 5.65 29.21 0.17 -5.20 16 15 C 0.16 6.20 5.63 87.21 0.49 6.70 16 16 N -0.61 -29.04 2.53 -698.09 -1.77 -30.81 16 17 C -0.26 -14.15 9.21 84.03 0.77 -13.38 16 18 H 0.04 2.52 7.83 -2.91 -0.02 2.50 16 19 C -0.03 -1.54 5.27 84.86 0.45 -1.10 16 20 N -0.92 -52.74 10.59 21.65 0.23 -52.51 16 21 Si 0.94 45.80 29.55 68.60 2.03 47.83 16 22 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 25 C 0.18 8.10 5.14 86.56 0.44 8.55 16 26 C 0.08 2.56 5.02 87.55 0.44 3.00 16 27 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.03 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.06 2.59 7.36 -2.39 -0.02 2.57 16 32 H 0.13 4.34 7.00 -2.91 -0.02 4.32 16 33 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.15 3.42 7.06 -2.91 -0.02 3.40 16 36 H 0.10 2.44 8.05 -2.39 -0.02 2.42 16 37 H 0.07 2.44 7.09 -2.38 -0.02 2.42 16 38 H 0.02 1.01 7.91 -2.39 -0.02 1.00 16 39 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 40 H 0.04 1.47 8.02 -2.39 -0.02 1.45 16 41 H 0.06 2.00 7.59 -2.39 -0.02 1.98 16 42 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 43 H 0.04 2.28 6.62 -2.39 -0.02 2.27 16 44 H 0.02 0.88 7.96 -2.38 -0.02 0.86 16 45 H 0.10 2.83 4.14 -2.39 -0.01 2.82 16 46 H 0.09 2.53 7.72 -2.39 -0.02 2.51 16 Total: -1.00 -71.07 362.95 4.03 -67.04 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.97 Total: 19.31 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 6.04 Total: 14.08 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -3.58 Total: -105.79 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -1.43 Total: -42.48 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -71.07 4.03 -67.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981536455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.954 kcal (2) G-P(sol) polarization free energy of solvation -71.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds