Wall clock time and date at job start Tue Mar 31 2020 12:40:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.42899 * 114.00662 * 2 1
4 4 H 1.09008 * 109.46707 * 30.00307 * 3 2 1
5 5 C 1.50694 * 109.47610 * 150.00176 * 3 2 1
6 6 O 1.21285 * 119.99637 * 22.07062 * 5 3 2
7 7 N 1.34772 * 120.00071 * 202.06825 * 5 3 2
8 8 C 1.48217 * 119.97214 * 355.36366 * 7 5 3
9 9 C 1.47141 * 110.34513 * 102.48949 * 8 7 5
10 10 C 1.53741 * 111.84801 * 58.31634 * 9 8 7
11 11 N 1.43466 * 107.93926 * 281.64056 * 10 9 8
12 12 C 1.36934 * 118.93675 * 273.61945 * 11 10 9
13 13 H 1.07997 * 120.00361 * 26.96914 * 12 11 10
14 14 C 1.38820 * 120.00071 * 206.96233 * 12 11 10
15 15 N 1.31623 * 119.99422 * 11.98905 * 14 12 11
16 16 Si 1.86794 * 120.00083 * 191.98952 * 14 12 11
17 17 H 1.48495 * 109.47111 * 90.00102 * 16 14 12
18 18 H 1.48507 * 109.46863 * 210.00393 * 16 14 12
19 19 H 1.48503 * 109.47078 * 329.99717 * 16 14 12
20 20 C 1.48853 * 122.11992 * 93.65175 * 11 10 9
21 21 C 1.43626 * 119.96985 * 175.33482 * 7 5 3
22 22 C 1.50700 * 109.47093 * 270.00715 * 3 2 1
23 23 C 1.38239 * 119.99816 * 309.33002 * 22 3 2
24 24 C 1.38237 * 119.99734 * 179.78885 * 23 22 3
25 25 C 1.38233 * 120.00143 * 0.44614 * 24 23 22
26 26 C 1.38240 * 119.99883 * 359.80500 * 25 24 23
27 27 C 1.38229 * 120.00163 * 359.97438 * 26 25 24
28 28 H 1.09004 * 109.46750 * 299.99642 * 1 2 3
29 29 H 1.08996 * 109.47283 * 59.99297 * 1 2 3
30 30 H 1.08999 * 109.47287 * 180.02562 * 1 2 3
31 31 H 1.08998 * 109.32222 * 222.76390 * 8 7 5
32 32 H 1.08998 * 109.31708 * 342.22156 * 8 7 5
33 33 H 1.08997 * 109.00459 * 178.90648 * 9 8 7
34 34 H 1.08990 * 109.00609 * 297.69161 * 9 8 7
35 35 H 1.08993 * 109.76009 * 162.03367 * 10 9 8
36 36 H 1.09002 * 109.82597 * 41.28085 * 10 9 8
37 37 H 0.96997 * 119.99307 * 174.98390 * 15 14 12
38 38 H 1.09004 * 109.48036 * 200.63501 * 20 11 10
39 39 H 1.09001 * 109.49511 * 80.60560 * 20 11 10
40 40 H 1.09003 * 108.87282 * 31.44470 * 21 7 5
41 41 H 1.08996 * 108.87729 * 149.87808 * 21 7 5
42 42 H 1.07995 * 120.00032 * 0.02562 * 23 22 3
43 43 H 1.07996 * 119.99874 * 180.27560 * 24 23 22
44 44 H 1.07995 * 120.00093 * 179.83307 * 25 24 23
45 45 H 1.08000 * 119.99670 * 179.97438 * 26 25 24
46 46 H 1.08002 * 120.00361 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3451 1.9993 0.5139
5 6 3.3387 1.2638 0.7103
6 8 3.9369 0.2141 0.8166
7 7 3.8620 2.3930 1.2274
8 6 3.1824 3.6919 1.0087
9 6 2.4454 4.0935 2.2172
10 6 3.3705 4.2085 3.4397
11 7 3.6273 2.8833 3.9258
12 6 2.7472 2.3201 4.8108
13 1 1.7116 2.6266 4.8116
14 6 3.1860 1.3550 5.7070
15 7 4.4754 1.1489 5.8729
16 14 1.9468 0.3490 6.6772
17 1 1.5967 -0.8754 5.9135
18 1 2.5364 -0.0349 7.9851
19 1 0.7222 1.1577 6.9047
20 6 4.8199 2.1013 3.4995
21 6 5.0775 2.3365 1.9905
22 6 2.2145 1.7643 -1.4208
23 6 2.8631 0.9446 -2.3255
24 6 3.0465 1.3638 -3.6299
25 6 2.5897 2.6064 -4.0273
26 6 1.9457 3.4283 -3.1213
27 6 1.7582 3.0073 -1.8181
28 1 -0.3633 0.5138 0.8901
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3634 -1.0276 0.0005
31 1 3.9260 4.4523 0.7701
32 1 2.4858 3.5985 0.1756
33 1 1.9710 5.0586 2.0393
34 1 1.6732 3.3528 2.4246
35 1 2.8833 4.7980 4.2163
36 1 4.3081 4.6832 3.1505
37 1 4.7838 0.5271 6.5504
38 1 4.6415 1.0407 3.6767
39 1 5.6899 2.4240 4.0714
40 1 5.6967 1.5252 1.6078
41 1 5.6154 3.2764 1.8669
42 1 3.2230 -0.0249 -2.0141
43 1 3.5492 0.7215 -4.3378
44 1 2.7354 2.9350 -5.0457
45 1 1.5892 4.3993 -3.4317
46 1 1.2555 3.6495 -1.1101
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000989516677.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:40:51
Heat of formation + Delta-G solvation = -8.652569 kcal
Electronic energy + Delta-G solvation = -28579.284979 eV
Core-core repulsion = 24856.564144 eV
Total energy + Delta-G solvation = -3722.720835 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-40.46604 -38.85669 -37.54659 -36.62111 -34.36695 -32.40694 -32.11778 -31.04330
-30.76728 -28.34211 -27.18509 -25.59988 -25.44261 -23.56762 -22.70223 -22.39772
-21.23925 -19.76661 -18.66873 -17.51649 -16.91838 -16.51407 -16.49428 -15.88881
-15.42018 -15.04595 -14.62313 -14.53183 -14.24410 -14.18965 -13.75556 -13.52491
-13.47321 -13.17795 -13.01106 -12.66298 -12.43517 -12.35688 -12.20900 -11.57321
-11.47993 -11.32327 -11.26268 -11.00371 -10.86917 -10.72451 -10.56427 -10.36322
-10.13258 -9.91801 -9.74845 -9.67351 -9.33255 -8.99871 -8.70957 -8.42924
-7.98266 -6.61111 -5.73854 -3.17540 1.15918 1.30710 2.99617 3.28165
3.41239 3.47232 3.48984 3.63901 4.13349 4.54019 4.60740 4.75467
4.86895 4.92086 5.01772 5.12827 5.17556 5.36185 5.40617 5.44663
5.46845 5.52641 5.53589 5.64107 5.72472 5.78963 5.81128 5.90880
5.94898 6.15096 6.18679 6.31149 6.39691 6.40771 6.42740 6.46440
6.48895 6.76257 6.87158 6.94807 6.97242 7.17782 7.50089 7.70076
7.83602 7.94612 8.52116 8.72756 9.26590 9.93953 10.39914 11.35269
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.017024 B = 0.004598 C = 0.004233
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1644.372506 B = 6088.695142 C = 6612.782331
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.352 6.352
3 C 0.116 3.884
4 H 0.089 0.911
5 C 0.526 3.474
6 O -0.523 6.523
7 N -0.579 5.579
8 C 0.112 3.888
9 C -0.175 4.175
10 C 0.164 3.836
11 N -0.591 5.591
12 C -0.258 4.258
13 H 0.062 0.938
14 C 0.009 3.991
15 N -0.907 5.907
16 Si 0.900 3.100
17 H -0.287 1.287
18 H -0.291 1.291
19 H -0.280 1.280
20 C 0.168 3.832
21 C 0.089 3.911
22 C -0.108 4.108
23 C -0.083 4.083
24 C -0.123 4.123
25 C -0.117 4.117
26 C -0.123 4.123
27 C -0.110 4.110
28 H 0.046 0.954
29 H 0.040 0.960
30 H 0.089 0.911
31 H 0.067 0.933
32 H 0.073 0.927
33 H 0.057 0.943
34 H 0.065 0.935
35 H 0.046 0.954
36 H 0.034 0.966
37 H 0.254 0.746
38 H 0.078 0.922
39 H 0.040 0.960
40 H 0.072 0.928
41 H 0.056 0.944
42 H 0.130 0.870
43 H 0.123 0.877
44 H 0.121 0.879
45 H 0.123 0.877
46 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.510 6.328 -18.098 19.948
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.269 6.269
3 C 0.054 3.946
4 H 0.107 0.893
5 C 0.312 3.688
6 O -0.398 6.398
7 N -0.311 5.311
8 C -0.010 4.010
9 C -0.217 4.217
10 C 0.035 3.965
11 N -0.312 5.312
12 C -0.388 4.388
13 H 0.080 0.920
14 C -0.190 4.190
15 N -0.551 5.551
16 Si 0.731 3.269
17 H -0.214 1.214
18 H -0.217 1.217
19 H -0.206 1.206
20 C 0.043 3.957
21 C -0.035 4.035
22 C -0.108 4.108
23 C -0.101 4.101
24 C -0.141 4.141
25 C -0.135 4.135
26 C -0.141 4.141
27 C -0.128 4.128
28 H 0.065 0.935
29 H 0.059 0.941
30 H 0.108 0.892
31 H 0.085 0.915
32 H 0.091 0.909
33 H 0.076 0.924
34 H 0.084 0.916
35 H 0.064 0.936
36 H 0.052 0.948
37 H 0.064 0.936
38 H 0.097 0.903
39 H 0.058 0.942
40 H 0.090 0.910
41 H 0.075 0.925
42 H 0.148 0.852
43 H 0.141 0.859
44 H 0.139 0.861
45 H 0.141 0.859
46 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges -4.952 5.425 -17.948 19.393
hybrid contribution -0.958 -0.228 0.651 1.180
sum -5.910 5.197 -17.297 19.003
Atomic orbital electron populations
1.22878 0.80819 1.03098 1.00025 1.88050 1.19566 1.24619 1.94649
1.20808 0.94967 0.86875 0.91922 0.89345 1.19802 0.86112 0.83945
0.78939 1.90675 1.60894 1.29673 1.58568 1.47227 1.25939 1.06444
1.51537 1.20974 0.96829 0.84980 0.98203 1.21968 1.01145 1.00332
0.98241 1.20219 0.95366 0.88016 0.92913 1.43671 1.26441 1.10906
1.50184 1.19120 0.90263 1.18628 1.10796 0.92001 1.25048 0.95664
1.00470 0.97789 1.69938 1.12068 1.38411 1.34698 0.86326 0.80632
0.80695 0.79280 1.21362 1.21705 1.20597 1.21881 0.89158 0.98126
0.86545 1.22041 0.85130 1.00971 0.95382 1.20119 1.00202 0.95236
0.95284 1.21119 0.96279 0.99910 0.92813 1.21182 1.00311 0.96539
0.96066 1.21182 0.98325 0.94462 0.99514 1.21074 0.99878 0.99840
0.93319 1.21081 0.99934 0.95349 0.96413 0.93538 0.94093 0.89214
0.91470 0.90929 0.92443 0.91631 0.93579 0.94784 0.93553 0.90323
0.94182 0.91005 0.92538 0.85224 0.85948 0.86132 0.85876 0.85620
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.37 10.81 101.05 1.09 1.46 16
2 O -0.35 -6.15 9.69 -54.10 -0.52 -6.67 16
3 C 0.12 1.90 1.97 -29.04 -0.06 1.84 16
4 H 0.09 1.33 6.38 -51.92 -0.33 1.00 16
5 C 0.53 10.62 6.73 -10.99 -0.07 10.54 16
6 O -0.52 -12.63 16.16 -13.31 -0.22 -12.84 16
7 N -0.58 -10.79 2.46 -176.65 -0.43 -11.23 16
8 C 0.11 1.66 5.24 -5.91 -0.03 1.63 16
9 C -0.18 -2.82 5.63 -29.16 -0.16 -2.98 16
10 C 0.16 3.22 5.63 -5.26 -0.03 3.19 16
11 N -0.59 -14.43 2.53 -172.03 -0.44 -14.87 16
12 C -0.26 -7.07 9.26 -15.06 -0.14 -7.20 16
13 H 0.06 1.67 7.86 -52.49 -0.41 1.26 16
14 C 0.01 0.25 5.00 -17.43 -0.09 0.16 16
15 N -0.91 -26.74 10.87 55.49 0.60 -26.13 16
16 Si 0.90 22.44 29.57 -169.99 -5.03 17.41 16
17 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
18 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16
19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
20 C 0.17 4.12 5.16 -1.75 -0.01 4.11 16
21 C 0.09 1.79 5.29 -4.57 -0.02 1.76 16
22 C -0.11 -1.48 4.63 -104.62 -0.48 -1.96 16
23 C -0.08 -1.14 9.26 -39.58 -0.37 -1.51 16
24 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16
25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16
26 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16
27 C -0.11 -1.22 8.24 -39.58 -0.33 -1.54 16
28 H 0.05 0.58 8.09 -51.93 -0.42 0.16 16
29 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16
30 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16
31 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16
32 H 0.07 0.92 2.88 -51.93 -0.15 0.77 16
33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
34 H 0.06 1.21 7.77 -51.93 -0.40 0.80 16
35 H 0.05 0.92 8.02 -51.93 -0.42 0.51 16
36 H 0.03 0.62 7.59 -51.93 -0.39 0.23 16
37 H 0.25 7.33 8.32 -40.82 -0.34 6.99 16
38 H 0.08 2.27 6.58 -51.93 -0.34 1.92 16
39 H 0.04 1.03 7.98 -51.93 -0.41 0.62 16
40 H 0.07 1.48 7.31 -51.93 -0.38 1.10 16
41 H 0.06 0.98 7.73 -51.93 -0.40 0.58 16
42 H 0.13 1.98 8.05 -52.49 -0.42 1.55 16
43 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16
44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16
45 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16
46 H 0.13 1.17 6.77 -52.49 -0.36 0.81 16
LS Contribution 363.58 15.07 5.48 5.48
Total: -1.00 -33.68 363.58 -9.38 -43.06
By element:
Atomic # 1 Polarization: 8.10 SS G_CDS: -6.93 Total: 1.17 kcal
Atomic # 6 Polarization: 6.51 SS G_CDS: -1.89 Total: 4.62 kcal
Atomic # 7 Polarization: -51.96 SS G_CDS: -0.27 Total: -52.23 kcal
Atomic # 8 Polarization: -18.77 SS G_CDS: -0.74 Total: -19.51 kcal
Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -33.68 -9.38 -43.06 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000989516677.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.410 kcal
(2) G-P(sol) polarization free energy of solvation -33.682 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.728 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.062 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.653 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds