Wall clock time and date at job start Tue Mar 31 2020 12:40:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.42899 * 114.00662 * 2 1
4 4 H 1.09008 * 109.46707 * 30.00307 * 3 2 1
5 5 C 1.50694 * 109.47610 * 150.00176 * 3 2 1
6 6 O 1.21285 * 119.99637 * 22.07062 * 5 3 2
7 7 N 1.34772 * 120.00071 * 202.06825 * 5 3 2
8 8 C 1.48217 * 119.97214 * 355.36366 * 7 5 3
9 9 C 1.47141 * 110.34513 * 102.48949 * 8 7 5
10 10 C 1.53741 * 111.84801 * 58.31634 * 9 8 7
11 11 N 1.43466 * 107.93926 * 281.64056 * 10 9 8
12 12 C 1.36934 * 118.93675 * 273.61945 * 11 10 9
13 13 H 1.07997 * 120.00361 * 26.96914 * 12 11 10
14 14 C 1.38820 * 120.00071 * 206.96233 * 12 11 10
15 15 N 1.31623 * 119.99422 * 11.98905 * 14 12 11
16 16 Si 1.86794 * 120.00083 * 191.98952 * 14 12 11
17 17 H 1.48495 * 109.47111 * 90.00102 * 16 14 12
18 18 H 1.48507 * 109.46863 * 210.00393 * 16 14 12
19 19 H 1.48503 * 109.47078 * 329.99717 * 16 14 12
20 20 C 1.48853 * 122.11992 * 93.65175 * 11 10 9
21 21 C 1.43626 * 119.96985 * 175.33482 * 7 5 3
22 22 C 1.50700 * 109.47093 * 270.00715 * 3 2 1
23 23 C 1.38239 * 119.99816 * 309.33002 * 22 3 2
24 24 C 1.38237 * 119.99734 * 179.78885 * 23 22 3
25 25 C 1.38233 * 120.00143 * 0.44614 * 24 23 22
26 26 C 1.38240 * 119.99883 * 359.80500 * 25 24 23
27 27 C 1.38229 * 120.00163 * 359.97438 * 26 25 24
28 28 H 1.09004 * 109.46750 * 299.99642 * 1 2 3
29 29 H 1.08996 * 109.47283 * 59.99297 * 1 2 3
30 30 H 1.08999 * 109.47287 * 180.02562 * 1 2 3
31 31 H 1.08998 * 109.32222 * 222.76390 * 8 7 5
32 32 H 1.08998 * 109.31708 * 342.22156 * 8 7 5
33 33 H 1.08997 * 109.00459 * 178.90648 * 9 8 7
34 34 H 1.08990 * 109.00609 * 297.69161 * 9 8 7
35 35 H 1.08993 * 109.76009 * 162.03367 * 10 9 8
36 36 H 1.09002 * 109.82597 * 41.28085 * 10 9 8
37 37 H 0.96997 * 119.99307 * 174.98390 * 15 14 12
38 38 H 1.09004 * 109.48036 * 200.63501 * 20 11 10
39 39 H 1.09001 * 109.49511 * 80.60560 * 20 11 10
40 40 H 1.09003 * 108.87282 * 31.44470 * 21 7 5
41 41 H 1.08996 * 108.87729 * 149.87808 * 21 7 5
42 42 H 1.07995 * 120.00032 * 0.02562 * 23 22 3
43 43 H 1.07996 * 119.99874 * 180.27560 * 24 23 22
44 44 H 1.07995 * 120.00093 * 179.83307 * 25 24 23
45 45 H 1.08000 * 119.99670 * 179.97438 * 26 25 24
46 46 H 1.08002 * 120.00361 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 1 1.3451 1.9993 0.5139
5 6 3.3387 1.2638 0.7103
6 8 3.9369 0.2141 0.8166
7 7 3.8620 2.3930 1.2274
8 6 3.1824 3.6919 1.0087
9 6 2.4454 4.0935 2.2172
10 6 3.3705 4.2085 3.4397
11 7 3.6273 2.8833 3.9258
12 6 2.7472 2.3201 4.8108
13 1 1.7116 2.6266 4.8116
14 6 3.1860 1.3550 5.7070
15 7 4.4754 1.1489 5.8729
16 14 1.9468 0.3490 6.6772
17 1 1.5967 -0.8754 5.9135
18 1 2.5364 -0.0349 7.9851
19 1 0.7222 1.1577 6.9047
20 6 4.8199 2.1013 3.4995
21 6 5.0775 2.3365 1.9905
22 6 2.2145 1.7643 -1.4208
23 6 2.8631 0.9446 -2.3255
24 6 3.0465 1.3638 -3.6299
25 6 2.5897 2.6064 -4.0273
26 6 1.9457 3.4283 -3.1213
27 6 1.7582 3.0073 -1.8181
28 1 -0.3633 0.5138 0.8901
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3634 -1.0276 0.0005
31 1 3.9260 4.4523 0.7701
32 1 2.4858 3.5985 0.1756
33 1 1.9710 5.0586 2.0393
34 1 1.6732 3.3528 2.4246
35 1 2.8833 4.7980 4.2163
36 1 4.3081 4.6832 3.1505
37 1 4.7838 0.5271 6.5504
38 1 4.6415 1.0407 3.6767
39 1 5.6899 2.4240 4.0714
40 1 5.6967 1.5252 1.6078
41 1 5.6154 3.2764 1.8669
42 1 3.2230 -0.0249 -2.0141
43 1 3.5492 0.7215 -4.3378
44 1 2.7354 2.9350 -5.0457
45 1 1.5892 4.3993 -3.4317
46 1 1.2555 3.6495 -1.1101
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000989516677.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:40:51
Heat of formation + Delta-G solvation = -29.039313 kcal
Electronic energy + Delta-G solvation = -28580.169015 eV
Core-core repulsion = 24856.564144 eV
Total energy + Delta-G solvation = -3723.604870 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.76553 -39.99947 -38.85027 -38.13507 -36.12867 -33.94571 -33.46121 -32.49207
-31.82563 -29.80146 -28.52403 -27.10722 -26.83495 -25.33784 -23.82704 -23.46471
-22.34924 -21.50039 -20.13831 -18.82772 -18.42003 -17.97190 -17.84355 -17.04919
-16.81125 -16.64510 -15.93589 -15.73319 -15.57336 -15.48228 -15.39447 -15.00556
-14.81708 -14.30642 -14.22740 -13.95111 -13.86246 -13.64088 -13.53351 -13.23297
-13.07921 -12.85680 -12.55895 -12.42775 -12.27133 -12.21950 -12.07260 -11.91643
-11.78344 -11.71053 -11.43411 -11.13039 -10.63482 -10.53896 -9.83338 -9.72041
-9.55576 -8.61730 -7.87469 -5.31600 0.29941 0.47876 1.37943 1.43033
1.48467 1.52427 1.93171 2.47981 2.75108 2.95306 3.29264 3.52361
3.63345 3.71511 3.80186 3.99995 4.11554 4.16441 4.27025 4.29970
4.32094 4.42712 4.46612 4.52313 4.55360 4.61096 4.69282 4.74456
4.79499 4.82851 4.94339 4.96998 5.01446 5.13852 5.27045 5.29012
5.51421 5.52221 5.57718 5.59071 5.60553 5.68938 5.80113 6.02939
6.07350 6.40868 6.46285 7.16054 7.21694 7.93776 8.35954 9.19570
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.017024 B = 0.004598 C = 0.004233
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1644.372506 B = 6088.695142 C = 6612.782331
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.390 6.390
3 C 0.125 3.875
4 H 0.102 0.898
5 C 0.513 3.487
6 O -0.581 6.581
7 N -0.580 5.580
8 C 0.107 3.893
9 C -0.161 4.161
10 C 0.153 3.847
11 N -0.604 5.604
12 C -0.255 4.255
13 H 0.066 0.934
14 C -0.051 4.051
15 N -0.939 5.939
16 Si 0.956 3.044
17 H -0.299 1.299
18 H -0.293 1.293
19 H -0.261 1.261
20 C 0.182 3.818
21 C 0.102 3.898
22 C -0.123 4.123
23 C -0.110 4.110
24 C -0.128 4.128
25 C -0.111 4.111
26 C -0.114 4.114
27 C -0.109 4.109
28 H 0.048 0.952
29 H 0.064 0.936
30 H 0.099 0.901
31 H 0.098 0.902
32 H 0.101 0.899
33 H 0.105 0.895
34 H 0.040 0.960
35 H 0.042 0.958
36 H 0.053 0.947
37 H 0.246 0.754
38 H 0.023 0.977
39 H 0.018 0.982
40 H 0.056 0.944
41 H 0.093 0.907
42 H 0.096 0.904
43 H 0.136 0.864
44 H 0.153 0.847
45 H 0.160 0.840
46 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.636 9.993 -20.965 24.447
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.309 6.309
3 C 0.064 3.936
4 H 0.120 0.880
5 C 0.300 3.700
6 O -0.460 6.460
7 N -0.311 5.311
8 C -0.013 4.013
9 C -0.202 4.202
10 C 0.026 3.974
11 N -0.327 5.327
12 C -0.386 4.386
13 H 0.084 0.916
14 C -0.246 4.246
15 N -0.585 5.585
16 Si 0.785 3.215
17 H -0.227 1.227
18 H -0.219 1.219
19 H -0.185 1.185
20 C 0.056 3.944
21 C -0.023 4.023
22 C -0.124 4.124
23 C -0.128 4.128
24 C -0.146 4.146
25 C -0.128 4.128
26 C -0.132 4.132
27 C -0.127 4.127
28 H 0.066 0.934
29 H 0.082 0.918
30 H 0.118 0.882
31 H 0.116 0.884
32 H 0.119 0.881
33 H 0.124 0.876
34 H 0.058 0.942
35 H 0.060 0.940
36 H 0.071 0.929
37 H 0.055 0.945
38 H 0.041 0.959
39 H 0.036 0.964
40 H 0.074 0.926
41 H 0.111 0.889
42 H 0.114 0.886
43 H 0.154 0.846
44 H 0.170 0.830
45 H 0.177 0.823
46 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges -7.126 9.171 -20.839 23.857
hybrid contribution -0.309 -1.302 1.459 1.980
sum -7.435 7.868 -19.380 22.199
Atomic orbital electron populations
1.23073 0.78668 1.04275 1.01152 1.88001 1.22028 1.25887 1.94945
1.20733 0.92566 0.86765 0.93530 0.88010 1.20730 0.87304 0.83432
0.78489 1.90634 1.62732 1.31878 1.60771 1.47429 1.25539 1.07842
1.50303 1.21329 0.97973 0.83461 0.98563 1.21750 0.99635 1.02164
0.96606 1.20521 0.97118 0.85450 0.94283 1.43862 1.25751 1.12862
1.50177 1.19455 0.90937 1.18012 1.10191 0.91612 1.25759 0.97074
1.02134 0.99649 1.70110 1.13671 1.39320 1.35447 0.85432 0.79458
0.78950 0.77670 1.22690 1.21923 1.18521 1.21476 0.88537 0.94903
0.89515 1.21705 0.86236 1.02160 0.92225 1.19940 1.02161 0.96756
0.93498 1.21013 0.98070 0.99194 0.94540 1.21381 1.00391 0.97778
0.95035 1.21595 0.96779 0.93330 1.01129 1.21509 0.98357 1.01000
0.92311 1.21315 0.99462 0.94096 0.97800 0.93380 0.91782 0.88219
0.88361 0.88141 0.87647 0.94151 0.93956 0.92915 0.94463 0.95868
0.96436 0.92595 0.88907 0.88608 0.84612 0.82967 0.82275 0.83288
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.61 10.81 113.37 1.23 1.83 16
2 O -0.39 -14.07 9.69 -130.94 -1.27 -15.34 16
3 C 0.13 4.06 1.97 29.10 0.06 4.12 16
4 H 0.10 2.90 6.38 -2.38 -0.02 2.88 16
5 C 0.51 21.21 6.73 87.66 0.59 21.80 16
6 O -0.58 -30.04 16.16 15.00 0.24 -29.80 16
7 N -0.58 -21.20 2.46 -831.19 -2.04 -23.24 16
8 C 0.11 2.73 5.24 84.23 0.44 3.18 16
9 C -0.16 -4.55 5.63 29.02 0.16 -4.39 16
10 C 0.15 5.67 5.63 87.19 0.49 6.17 16
11 N -0.60 -29.76 2.53 -698.17 -1.77 -31.53 16
12 C -0.26 -14.18 9.26 84.04 0.78 -13.40 16
13 H 0.07 3.54 7.86 -2.91 -0.02 3.51 16
14 C -0.05 -3.00 5.00 84.86 0.42 -2.57 16
15 N -0.94 -58.22 10.87 21.65 0.24 -57.99 16
16 Si 0.96 47.53 29.57 68.60 2.03 49.56 16
17 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16
18 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16
19 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16
20 C 0.18 9.29 5.16 86.57 0.45 9.74 16
21 C 0.10 4.13 5.29 87.55 0.46 4.59 16
22 C -0.12 -3.18 4.63 -19.86 -0.09 -3.27 16
23 C -0.11 -3.02 9.26 22.27 0.21 -2.82 16
24 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16
25 C -0.11 -1.65 10.05 22.27 0.22 -1.42 16
26 C -0.11 -1.57 10.05 22.27 0.22 -1.35 16
27 C -0.11 -1.94 8.24 22.27 0.18 -1.76 16
28 H 0.05 1.17 8.09 -2.39 -0.02 1.15 16
29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16
30 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16
31 H 0.10 2.01 8.06 -2.39 -0.02 1.99 16
32 H 0.10 2.06 2.88 -2.39 -0.01 2.05 16
33 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16
34 H 0.04 1.37 7.77 -2.39 -0.02 1.35 16
35 H 0.04 1.60 8.02 -2.39 -0.02 1.58 16
36 H 0.05 1.76 7.59 -2.39 -0.02 1.74 16
37 H 0.25 15.00 8.32 -92.71 -0.77 14.23 16
38 H 0.02 1.42 6.58 -2.38 -0.02 1.40 16
39 H 0.02 0.96 7.98 -2.39 -0.02 0.94 16
40 H 0.06 2.43 7.31 -2.39 -0.02 2.41 16
41 H 0.09 3.06 7.73 -2.39 -0.02 3.04 16
42 H 0.10 3.20 8.05 -2.91 -0.02 3.18 16
43 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16
44 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16
45 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16
46 H 0.15 1.90 6.77 -2.91 -0.02 1.88 16
Total: -1.00 -80.93 363.58 4.45 -76.48
By element:
Atomic # 1 Polarization: 12.79 SS G_CDS: 0.97 Total: 13.76 kcal
Atomic # 6 Polarization: 12.03 SS G_CDS: 6.05 Total: 18.08 kcal
Atomic # 7 Polarization: -109.18 SS G_CDS: -3.58 Total: -112.75 kcal
Atomic # 8 Polarization: -44.11 SS G_CDS: -1.03 Total: -45.13 kcal
Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal
Total: -80.93 4.45 -76.48 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000989516677.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.446 kcal
(2) G-P(sol) polarization free energy of solvation -80.931 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.485 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.485 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.039 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds