Wall clock time and date at job start Tue Mar 31 2020 12:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 113.99756 * 2 1 4 4 C 1.50702 * 109.47089 * 180.02562 * 3 2 1 5 5 C 1.38380 * 119.92732 * 270.01902 * 4 3 2 6 6 C 1.38335 * 120.29509 * 179.97438 * 5 4 3 7 7 C 1.37981 * 120.14192 * 359.79523 * 6 5 4 8 8 C 1.39554 * 119.85358 * 0.44102 * 7 6 5 9 9 C 1.47853 * 120.14753 * 179.81465 * 8 7 6 10 10 O 1.21547 * 120.00065 * 230.69477 * 9 8 7 11 11 N 1.34774 * 119.99537 * 50.68670 * 9 8 7 12 12 C 1.46921 * 120.63544 * 356.18667 * 11 9 8 13 13 C 1.53190 * 108.89492 * 126.46554 * 12 11 9 14 14 C 1.53041 * 109.31398 * 54.56516 * 13 12 11 15 15 N 1.46500 * 109.46446 * 178.62938 * 14 13 12 16 16 C 1.36933 * 120.00181 * 204.99641 * 15 14 13 17 17 H 1.07994 * 120.00132 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00045 * 179.97438 * 16 15 14 19 19 N 1.31625 * 119.99812 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00057 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47465 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47177 * 120.00141 * 20 18 16 23 23 H 1.48498 * 109.47317 * 240.00009 * 20 18 16 24 24 C 1.53050 * 109.53663 * 298.63594 * 14 13 12 25 25 C 1.46961 * 120.65039 * 176.00718 * 11 9 8 26 26 C 1.37933 * 119.92569 * 89.99644 * 4 3 2 27 27 H 1.09004 * 109.47653 * 300.00029 * 1 2 3 28 28 H 1.09004 * 109.47583 * 60.00557 * 1 2 3 29 29 H 1.08999 * 109.47171 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47363 * 60.00122 * 3 2 1 31 31 H 1.08998 * 109.47224 * 299.99742 * 3 2 1 32 32 H 1.07999 * 119.85358 * 0.02562 * 5 4 3 33 33 H 1.08002 * 119.93000 * 180.02562 * 6 5 4 34 34 H 1.08006 * 120.07664 * 180.22571 * 7 6 5 35 35 H 1.08994 * 109.58820 * 6.60736 * 12 11 9 36 36 H 1.09004 * 109.58806 * 246.32133 * 12 11 9 37 37 H 1.09000 * 109.50106 * 174.51403 * 13 12 11 38 38 H 1.09002 * 109.49749 * 294.61528 * 13 12 11 39 39 H 1.08997 * 109.46416 * 58.65261 * 14 13 12 40 40 H 0.97001 * 119.99478 * 24.99970 * 15 14 13 41 41 H 0.96998 * 119.99483 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.49640 * 181.31524 * 24 14 13 43 43 H 1.08994 * 109.49555 * 301.41436 * 24 14 13 44 44 H 1.08999 * 109.46960 * 113.74529 * 25 11 9 45 45 H 1.09000 * 109.71144 * 353.46262 * 25 11 9 46 46 H 1.07999 * 120.08043 * 359.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 6 4.2011 1.1314 1.1984 6 6 5.5801 1.0217 1.2067 7 6 6.2776 0.9622 0.0176 8 6 5.5896 1.0223 -1.1951 9 6 6.3308 0.9633 -2.4730 10 8 6.1289 1.7993 -3.3319 11 7 7.2304 -0.0175 -2.6855 12 6 7.5465 -0.9858 -1.6266 13 6 7.3605 -2.4027 -2.1784 14 6 8.1982 -2.5652 -3.4488 15 7 8.0484 -3.9294 -3.9612 16 6 9.0323 -4.4812 -4.7374 17 1 9.9189 -3.9109 -4.9716 18 6 8.8905 -5.7741 -5.2224 19 7 7.8101 -6.4694 -4.9366 20 14 10.2330 -6.5271 -6.2807 21 1 11.3351 -5.5470 -6.4537 22 1 10.7573 -7.7492 -5.6197 23 1 9.6742 -6.8840 -7.6094 24 6 7.7212 -1.5680 -4.5074 25 6 7.9113 -0.1417 -3.9819 26 6 4.1979 1.1324 -1.1964 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.6596 1.1734 2.1318 33 1 6.1116 0.9788 2.1458 34 1 7.3539 0.8729 0.0253 35 1 6.8774 -0.8326 -0.7799 36 1 8.5793 -0.8515 -1.3051 37 1 7.6852 -3.1289 -1.4332 38 1 6.3086 -2.5667 -2.4128 39 1 9.2468 -2.3767 -3.2190 40 1 7.2521 -4.4418 -3.7506 41 1 7.7109 -7.3727 -5.2758 42 1 8.3027 -1.7002 -5.4198 43 1 6.6660 -1.7399 -4.7198 44 1 8.9745 0.0623 -3.8549 45 1 7.4852 0.5685 -4.6905 46 1 3.6593 1.1747 -2.1315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996779995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:32 Heat of formation + Delta-G solvation = -38.348305 kcal Electronic energy + Delta-G solvation = -26456.628908 eV Core-core repulsion = 22732.620370 eV Total energy + Delta-G solvation = -3724.008538 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.61363 -39.10858 -37.76054 -37.24179 -34.53029 -32.73482 -31.90795 -31.45585 -30.53340 -29.19491 -27.59697 -25.64498 -25.29195 -23.95472 -22.81650 -22.39422 -21.81623 -20.28101 -19.03665 -17.46929 -16.97174 -16.73485 -16.64023 -16.39132 -15.94845 -15.33650 -15.29269 -14.81381 -14.57880 -14.26468 -13.85661 -13.70586 -13.56104 -13.25000 -13.10509 -13.01972 -12.73181 -12.59068 -12.36231 -12.01618 -11.83500 -11.66202 -11.51100 -11.27832 -10.93411 -10.87928 -10.80901 -10.41849 -10.22576 -10.04763 -9.95937 -9.75855 -9.66687 -9.17255 -9.03050 -8.89636 -8.50297 -6.97505 -5.77689 -3.06803 0.78013 1.04634 2.66801 2.99412 3.35762 3.42506 3.48231 3.50401 3.83306 4.35449 4.50258 4.56553 4.58170 4.77824 4.86370 4.96109 4.98030 5.04402 5.07427 5.15485 5.24518 5.29202 5.37455 5.38175 5.46035 5.54101 5.60100 5.64130 5.71534 5.78729 5.91474 6.00025 6.08654 6.10652 6.21917 6.23432 6.31202 6.44447 6.55684 6.57718 6.63792 6.79665 6.92143 7.05337 7.47592 7.69177 8.17870 8.40595 9.51907 10.09302 10.44024 11.44947 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.002822 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.018180 B = 9919.713423 C =10727.308575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.103 3.897 4 C -0.098 4.098 5 C -0.081 4.081 6 C -0.126 4.126 7 C -0.084 4.084 8 C -0.121 4.121 9 C 0.559 3.441 10 O -0.543 6.543 11 N -0.597 5.597 12 C 0.100 3.900 13 C -0.140 4.140 14 C 0.179 3.821 15 N -0.724 5.724 16 C -0.238 4.238 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.150 4.150 25 C 0.113 3.887 26 C -0.049 4.049 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.731 17.544 15.006 25.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C 0.027 3.973 4 C -0.098 4.098 5 C -0.100 4.100 6 C -0.144 4.144 7 C -0.102 4.102 8 C -0.124 4.124 9 C 0.347 3.653 10 O -0.421 6.421 11 N -0.329 5.329 12 C -0.022 4.022 13 C -0.179 4.179 14 C 0.069 3.931 15 N -0.365 5.365 16 C -0.370 4.370 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.191 4.191 25 C -0.009 4.009 26 C -0.068 4.068 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.217 0.783 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.104 0.896 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.542 17.742 14.431 24.781 hybrid contribution 0.223 -0.582 -0.582 0.852 sum -9.319 17.161 13.849 23.940 Atomic orbital electron populations 1.22777 0.80812 1.03085 0.99956 1.88005 1.19738 1.27123 1.95393 1.21334 0.89517 0.85365 1.01118 1.19480 0.94245 1.02824 0.93220 1.21183 0.94345 0.96974 0.97451 1.21081 0.94140 1.01139 0.98060 1.21387 1.00344 0.97075 0.91407 1.19896 0.94308 1.04673 0.93512 1.18326 0.79108 0.81284 0.86627 1.90765 1.66186 1.39370 1.45779 1.48104 1.40897 1.28808 1.15077 1.22089 1.01207 0.88826 0.90127 1.22208 1.01587 0.94780 0.99297 1.20172 0.96521 0.86238 0.90190 1.42440 1.23049 1.10394 1.60579 1.19275 0.98169 0.96424 1.23092 0.91117 1.24752 0.97766 0.97108 1.01365 1.69677 1.27418 1.11108 1.49833 0.86135 0.81092 0.79065 0.80001 1.20557 1.21893 1.21893 1.22673 1.02284 0.92967 1.01184 1.21744 0.96341 0.99038 0.83827 1.21014 0.92409 0.95184 0.98157 0.94063 0.93915 0.89356 0.92220 0.92175 0.85575 0.85089 0.85002 0.89289 0.91098 0.90420 0.91697 0.93398 0.78263 0.93560 0.90585 0.92245 0.91635 0.89633 0.85220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.07 10.69 -35.23 -0.38 -4.45 16 3 C 0.10 0.90 6.06 36.01 0.22 1.12 16 4 C -0.10 -1.01 5.50 -104.68 -0.58 -1.59 16 5 C -0.08 -0.72 9.69 -39.49 -0.38 -1.10 16 6 C -0.13 -1.08 10.03 -39.64 -0.40 -1.48 16 7 C -0.08 -0.85 7.36 -39.19 -0.29 -1.14 16 8 C -0.12 -1.55 5.00 -104.96 -0.53 -2.08 16 9 C 0.56 8.63 7.24 -12.33 -0.09 8.54 16 10 O -0.54 -10.07 16.48 5.32 0.09 -9.98 16 11 N -0.60 -8.73 2.98 -173.86 -0.52 -9.24 16 12 C 0.10 1.29 5.37 -3.71 -0.02 1.27 16 13 C -0.14 -2.22 5.55 -26.61 -0.15 -2.37 16 14 C 0.18 3.44 2.73 -67.88 -0.19 3.25 16 15 N -0.72 -17.87 5.12 -53.38 -0.27 -18.14 16 16 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 20 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 C -0.15 -2.70 5.66 -26.61 -0.15 -2.85 16 25 C 0.11 1.73 6.41 -3.69 -0.02 1.71 16 26 C -0.05 -0.60 9.39 -39.18 -0.37 -0.97 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.06 0.47 8.08 -51.93 -0.42 0.06 16 32 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.13 1.14 7.07 -52.48 -0.37 0.77 16 35 H 0.09 1.01 4.55 -51.93 -0.24 0.77 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 40 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16 41 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.09 1.37 7.04 -51.93 -0.37 1.01 16 46 H 0.13 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 375.94 15.07 5.67 5.67 Total: -1.00 -33.40 375.94 -8.95 -42.35 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.17 Total: 7.39 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -2.07 Total: -3.52 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.07 Total: -54.74 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.29 Total: -14.42 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.40 -8.95 -42.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996779995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.006 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds