Wall clock time and date at job start Tue Mar 31 2020 12:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 113.99756 * 2 1 4 4 C 1.50702 * 109.47089 * 180.02562 * 3 2 1 5 5 C 1.38380 * 119.92732 * 270.01902 * 4 3 2 6 6 C 1.38335 * 120.29509 * 179.97438 * 5 4 3 7 7 C 1.37981 * 120.14192 * 359.79523 * 6 5 4 8 8 C 1.39554 * 119.85358 * 0.44102 * 7 6 5 9 9 C 1.47853 * 120.14753 * 179.81465 * 8 7 6 10 10 O 1.21547 * 120.00065 * 230.69477 * 9 8 7 11 11 N 1.34774 * 119.99537 * 50.68670 * 9 8 7 12 12 C 1.46921 * 120.63544 * 356.18667 * 11 9 8 13 13 C 1.53190 * 108.89492 * 126.46554 * 12 11 9 14 14 C 1.53041 * 109.31398 * 54.56516 * 13 12 11 15 15 N 1.46500 * 109.46446 * 178.62938 * 14 13 12 16 16 C 1.36933 * 120.00181 * 204.99641 * 15 14 13 17 17 H 1.07994 * 120.00132 * 0.02562 * 16 15 14 18 18 C 1.38811 * 120.00045 * 179.97438 * 16 15 14 19 19 N 1.31625 * 119.99812 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00057 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47465 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47177 * 120.00141 * 20 18 16 23 23 H 1.48498 * 109.47317 * 240.00009 * 20 18 16 24 24 C 1.53050 * 109.53663 * 298.63594 * 14 13 12 25 25 C 1.46961 * 120.65039 * 176.00718 * 11 9 8 26 26 C 1.37933 * 119.92569 * 89.99644 * 4 3 2 27 27 H 1.09004 * 109.47653 * 300.00029 * 1 2 3 28 28 H 1.09004 * 109.47583 * 60.00557 * 1 2 3 29 29 H 1.08999 * 109.47171 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47363 * 60.00122 * 3 2 1 31 31 H 1.08998 * 109.47224 * 299.99742 * 3 2 1 32 32 H 1.07999 * 119.85358 * 0.02562 * 5 4 3 33 33 H 1.08002 * 119.93000 * 180.02562 * 6 5 4 34 34 H 1.08006 * 120.07664 * 180.22571 * 7 6 5 35 35 H 1.08994 * 109.58820 * 6.60736 * 12 11 9 36 36 H 1.09004 * 109.58806 * 246.32133 * 12 11 9 37 37 H 1.09000 * 109.50106 * 174.51403 * 13 12 11 38 38 H 1.09002 * 109.49749 * 294.61528 * 13 12 11 39 39 H 1.08997 * 109.46416 * 58.65261 * 14 13 12 40 40 H 0.97001 * 119.99478 * 24.99970 * 15 14 13 41 41 H 0.96998 * 119.99483 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.49640 * 181.31524 * 24 14 13 43 43 H 1.08994 * 109.49555 * 301.41436 * 24 14 13 44 44 H 1.08999 * 109.46960 * 113.74529 * 25 11 9 45 45 H 1.09000 * 109.71144 * 353.46262 * 25 11 9 46 46 H 1.07999 * 120.08043 * 359.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 6 4.2011 1.1314 1.1984 6 6 5.5801 1.0217 1.2067 7 6 6.2776 0.9622 0.0176 8 6 5.5896 1.0223 -1.1951 9 6 6.3308 0.9633 -2.4730 10 8 6.1289 1.7993 -3.3319 11 7 7.2304 -0.0175 -2.6855 12 6 7.5465 -0.9858 -1.6266 13 6 7.3605 -2.4027 -2.1784 14 6 8.1982 -2.5652 -3.4488 15 7 8.0484 -3.9294 -3.9612 16 6 9.0323 -4.4812 -4.7374 17 1 9.9189 -3.9109 -4.9716 18 6 8.8905 -5.7741 -5.2224 19 7 7.8101 -6.4694 -4.9366 20 14 10.2330 -6.5271 -6.2807 21 1 11.3351 -5.5470 -6.4537 22 1 10.7573 -7.7492 -5.6197 23 1 9.6742 -6.8840 -7.6094 24 6 7.7212 -1.5680 -4.5074 25 6 7.9113 -0.1417 -3.9819 26 6 4.1979 1.1324 -1.1964 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.6885 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.6596 1.1734 2.1318 33 1 6.1116 0.9788 2.1458 34 1 7.3539 0.8729 0.0253 35 1 6.8774 -0.8326 -0.7799 36 1 8.5793 -0.8515 -1.3051 37 1 7.6852 -3.1289 -1.4332 38 1 6.3086 -2.5667 -2.4128 39 1 9.2468 -2.3767 -3.2190 40 1 7.2521 -4.4418 -3.7506 41 1 7.7109 -7.3727 -5.2758 42 1 8.3027 -1.7002 -5.4198 43 1 6.6660 -1.7399 -4.7198 44 1 8.9745 0.0623 -3.8549 45 1 7.4852 0.5685 -4.6905 46 1 3.6593 1.1747 -2.1315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996779995.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:31 Heat of formation + Delta-G solvation = -59.755323 kcal Electronic energy + Delta-G solvation = -26457.557186 eV Core-core repulsion = 22732.620370 eV Total energy + Delta-G solvation = -3724.936816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.67815 -40.02064 -38.77894 -38.34005 -36.20381 -34.04328 -33.24202 -32.38975 -31.72189 -30.91256 -28.23007 -26.82977 -26.28571 -25.35257 -24.21389 -23.62155 -22.69145 -21.59873 -20.29014 -19.14373 -18.34076 -17.64652 -17.34491 -17.19786 -16.87877 -16.70004 -16.31811 -16.12318 -15.53012 -15.49519 -15.39276 -15.20288 -14.85869 -14.47355 -14.42899 -13.85148 -13.76528 -13.70932 -13.23246 -13.17212 -13.05889 -12.87857 -12.69371 -12.61272 -12.34347 -12.21423 -12.11828 -11.97624 -11.96675 -11.70085 -11.44817 -10.97744 -10.90799 -10.66610 -9.98919 -9.84075 -9.70785 -9.01591 -7.93784 -5.22538 -0.03163 0.27345 1.47637 1.48223 1.53444 1.58037 1.92946 2.54869 2.57433 3.15097 3.36323 3.39922 3.78388 3.80293 3.85605 3.89980 4.04224 4.11980 4.13613 4.23314 4.28717 4.35891 4.37639 4.39794 4.53253 4.56139 4.57334 4.62852 4.76175 4.79509 4.83146 4.84179 4.87332 4.95317 4.97692 5.08174 5.25821 5.32826 5.37214 5.47073 5.50121 5.53242 5.55884 5.88807 6.19239 6.28006 6.30837 6.99363 7.34166 8.09712 8.32646 9.30015 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.002822 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.018180 B = 9919.713423 C =10727.308575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.101 3.899 4 C -0.106 4.106 5 C -0.077 4.077 6 C -0.117 4.117 7 C -0.084 4.084 8 C -0.143 4.143 9 C 0.556 3.444 10 O -0.584 6.584 11 N -0.597 5.597 12 C 0.108 3.892 13 C -0.131 4.131 14 C 0.174 3.826 15 N -0.738 5.738 16 C -0.234 4.234 17 H 0.078 0.922 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.970 3.030 21 H -0.264 1.264 22 H -0.294 1.294 23 H -0.298 1.298 24 C -0.138 4.138 25 C 0.121 3.879 26 C -0.071 4.071 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.155 0.845 33 H 0.167 0.833 34 H 0.151 0.849 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.055 0.945 40 H 0.371 0.629 41 H 0.249 0.751 42 H 0.062 0.938 43 H 0.036 0.964 44 H 0.089 0.911 45 H 0.076 0.924 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.805 18.782 17.752 27.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.025 3.975 4 C -0.106 4.106 5 C -0.095 4.095 6 C -0.135 4.135 7 C -0.103 4.103 8 C -0.146 4.146 9 C 0.346 3.654 10 O -0.465 6.465 11 N -0.328 5.328 12 C -0.014 4.014 13 C -0.170 4.170 14 C 0.066 3.934 15 N -0.377 5.377 16 C -0.366 4.366 17 H 0.096 0.904 18 C -0.270 4.270 19 N -0.622 5.622 20 Si 0.800 3.200 21 H -0.188 1.188 22 H -0.221 1.221 23 H -0.225 1.225 24 C -0.179 4.179 25 C -0.002 4.002 26 C -0.090 4.090 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.173 0.827 33 H 0.185 0.815 34 H 0.168 0.832 35 H 0.128 0.872 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.202 0.798 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.055 0.945 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.595 19.022 17.202 27.049 hybrid contribution -0.137 -0.898 -1.380 1.652 sum -8.732 18.123 15.823 25.594 Atomic orbital electron populations 1.22938 0.79308 1.03735 1.01146 1.87948 1.21542 1.28242 1.95642 1.21441 0.88647 0.85021 1.02404 1.19721 0.95222 1.02545 0.93101 1.21596 0.94863 0.95173 0.97840 1.21502 0.94106 0.99082 0.98765 1.21620 1.01294 0.96546 0.90809 1.19783 0.94354 1.07321 0.93169 1.18813 0.78638 0.80658 0.87262 1.90731 1.67273 1.41018 1.47480 1.48169 1.40652 1.28969 1.15038 1.22208 1.03478 0.85970 0.89771 1.22093 0.99749 0.97317 0.97823 1.20424 0.97622 0.83737 0.91631 1.42675 1.22047 1.12361 1.60591 1.19664 0.98509 0.96368 1.22069 0.90367 1.25553 1.00042 0.97984 1.03465 1.69833 1.29514 1.11199 1.51683 0.85109 0.78892 0.78215 0.77782 1.18845 1.22077 1.22513 1.22462 1.00393 0.94661 1.00421 1.21584 0.97702 0.96551 0.84328 1.21020 0.92596 0.96853 0.98512 0.92126 0.93449 0.89071 0.89595 0.92209 0.82704 0.81527 0.83173 0.87197 0.88200 0.89797 0.93433 0.92665 0.79798 0.94167 0.91982 0.94537 0.89331 0.90571 0.87080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -8.40 10.69 -148.98 -1.59 -9.99 16 3 C 0.10 1.64 6.06 71.24 0.43 2.07 16 4 C -0.11 -2.05 5.50 -19.90 -0.11 -2.16 16 5 C -0.08 -1.10 9.69 22.33 0.22 -0.88 16 6 C -0.12 -1.52 10.03 22.23 0.22 -1.30 16 7 C -0.08 -1.47 7.36 22.53 0.17 -1.30 16 8 C -0.14 -3.56 5.00 -20.09 -0.10 -3.67 16 9 C 0.56 17.18 7.24 86.79 0.63 17.81 16 10 O -0.58 -22.32 16.48 -3.86 -0.06 -22.38 16 11 N -0.60 -16.89 2.98 -822.25 -2.45 -19.34 16 12 C 0.11 2.50 5.37 86.36 0.46 2.96 16 13 C -0.13 -4.04 5.55 30.67 0.17 -3.87 16 14 C 0.17 6.62 2.73 45.02 0.12 6.74 16 15 N -0.74 -36.85 5.12 -322.81 -1.65 -38.50 16 16 C -0.23 -12.83 9.93 84.03 0.83 -11.99 16 17 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 18 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 19 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 20 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 21 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 22 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 23 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 24 C -0.14 -5.05 5.66 30.68 0.17 -4.88 16 25 C 0.12 3.67 6.41 86.36 0.55 4.22 16 26 C -0.07 -1.75 9.39 22.53 0.21 -1.54 16 27 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 0.91 8.08 -2.39 -0.02 0.89 16 31 H 0.06 0.93 8.08 -2.39 -0.02 0.91 16 32 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.17 1.01 8.06 -2.91 -0.02 0.98 16 34 H 0.15 2.00 7.07 -2.91 -0.02 1.98 16 35 H 0.11 2.17 4.55 -2.39 -0.01 2.16 16 36 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.06 2.04 8.08 -2.39 -0.02 2.02 16 40 H 0.37 20.20 7.80 -92.71 -0.72 19.48 16 41 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 42 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 43 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.08 2.48 7.04 -2.39 -0.02 2.46 16 46 H 0.11 3.02 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -74.59 375.94 2.50 -72.09 By element: Atomic # 1 Polarization: 29.46 SS G_CDS: 0.25 Total: 29.71 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 5.70 Total: -0.25 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -3.82 Total: -117.37 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -1.66 Total: -32.37 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -74.59 2.50 -72.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996779995.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.334 kcal (2) G-P(sol) polarization free energy of solvation -74.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds