Wall clock time and date at job start Tue Mar 31 2020 12:30:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42901 * 114.00462 * 2 1
4 4 C 1.50698 * 109.47580 * 179.97438 * 3 2 1
5 5 C 1.38385 * 119.92702 * 90.00066 * 4 3 2
6 6 C 1.38335 * 120.29369 * 180.02562 * 5 4 3
7 7 C 1.37984 * 120.14079 * 0.02562 * 6 5 4
8 8 C 1.39555 * 119.85516 * 0.27694 * 7 6 5
9 9 C 1.47847 * 120.14206 * 179.71989 * 8 7 6
10 10 O 1.21560 * 119.99714 * 129.45048 * 9 8 7
11 11 N 1.34766 * 120.00376 * 309.45173 * 9 8 7
12 12 C 1.46927 * 120.63029 * 3.50696 * 11 9 8
13 13 C 1.52766 * 109.00819 * 233.58533 * 12 11 9
14 14 C 1.53041 * 109.38191 * 305.58515 * 13 12 11
15 15 C 1.53042 * 109.53818 * 61.24367 * 14 13 12
16 16 H 1.09000 * 109.49828 * 58.57690 * 15 14 13
17 17 N 1.46500 * 109.52507 * 178.66573 * 15 14 13
18 18 C 1.36932 * 119.99699 * 204.85349 * 17 15 14
19 19 H 1.07998 * 120.00347 * 359.97438 * 18 17 15
20 20 C 1.38811 * 119.99731 * 180.02562 * 18 17 15
21 21 N 1.31617 * 120.00098 * 359.97438 * 20 18 17
22 22 Si 1.86806 * 120.00034 * 180.02562 * 20 18 17
23 23 H 1.48498 * 109.47304 * 89.99841 * 22 20 18
24 24 H 1.48499 * 109.46894 * 209.99561 * 22 20 18
25 25 H 1.48503 * 109.47036 * 329.99464 * 22 20 18
26 26 C 1.46929 * 120.63383 * 183.78860 * 11 9 8
27 27 C 1.37933 * 119.92761 * 269.98519 * 4 3 2
28 28 H 1.09008 * 109.46874 * 59.99567 * 1 2 3
29 29 H 1.09001 * 109.47228 * 179.97438 * 1 2 3
30 30 H 1.08996 * 109.47019 * 299.99927 * 1 2 3
31 31 H 1.09000 * 109.46622 * 59.99877 * 3 2 1
32 32 H 1.09006 * 109.47184 * 300.00496 * 3 2 1
33 33 H 1.07998 * 119.85003 * 359.97438 * 5 4 3
34 34 H 1.07990 * 119.93050 * 179.97438 * 6 5 4
35 35 H 1.08005 * 120.06983 * 180.02562 * 7 6 5
36 36 H 1.09003 * 109.58605 * 353.41938 * 12 11 9
37 37 H 1.08995 * 109.58595 * 113.84567 * 12 11 9
38 38 H 1.08999 * 109.56446 * 185.55289 * 13 12 11
39 39 H 1.08997 * 109.38586 * 65.51326 * 13 12 11
40 40 H 1.08996 * 109.46166 * 301.21686 * 14 13 12
41 41 H 1.09005 * 109.45876 * 181.25917 * 14 13 12
42 42 H 0.96997 * 119.99654 * 24.85289 * 17 15 14
43 43 H 0.97005 * 119.99961 * 180.02562 * 21 20 18
44 44 H 1.08997 * 109.58492 * 246.15577 * 26 11 9
45 45 H 1.09001 * 109.58284 * 6.57788 * 26 11 9
46 46 H 1.08004 * 120.07507 * 359.97438 * 27 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5126 1.1864 0.0006
5 6 4.2013 1.1317 -1.1984
6 6 5.5803 1.0219 -1.2067
7 6 6.2780 0.9658 -0.0176
8 6 5.5891 1.0141 1.1951
9 6 6.3298 0.9481 2.4729
10 8 6.1224 1.7755 3.3391
11 7 7.2349 -0.0291 2.6775
12 6 7.5524 -0.9903 1.6126
13 6 7.3754 -2.4082 2.1531
14 6 8.2137 -2.5762 3.4223
15 6 7.7334 -1.5880 4.4876
16 1 6.6787 -1.7648 4.6988
17 7 8.5149 -1.7709 5.7131
18 6 7.9866 -1.4067 6.9228
19 1 6.9939 -0.9842 6.9734
20 6 8.7273 -1.5795 8.0840
21 7 9.9372 -2.0938 8.0223
22 14 8.0063 -1.0833 9.7343
23 1 7.2782 -2.2359 10.3231
24 1 9.1011 -0.6701 10.6486
25 1 7.0666 0.0506 9.5432
26 6 7.9186 -0.1574 3.9717
27 6 4.1981 1.1326 1.1963
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 1.6887 1.8463 0.8900
32 1 1.6886 1.8464 -0.8900
33 1 3.6597 1.1741 -2.1318
34 1 6.1118 0.9793 -2.1458
35 1 7.3547 0.8805 -0.0254
36 1 6.8801 -0.8358 0.7686
37 1 8.5844 -0.8512 1.2906
38 1 7.7025 -3.1282 1.4030
39 1 6.3242 -2.5778 2.3862
40 1 9.2617 -2.3828 3.1936
41 1 8.1058 -3.5943 3.7966
42 1 9.4066 -2.1500 5.6676
43 1 10.4547 -2.2149 8.8338
44 1 8.9810 0.0510 3.8460
45 1 7.4878 0.5464 4.6838
46 1 3.6595 1.1761 2.1315
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000999627318.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:30:46
Heat of formation + Delta-G solvation = -38.035507 kcal
Electronic energy + Delta-G solvation = -26577.862955 eV
Core-core repulsion = 22853.867980 eV
Total energy + Delta-G solvation = -3723.994974 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.53495 -39.06880 -37.76663 -37.14187 -34.51853 -32.69952 -32.04138 -31.38523
-31.03478 -28.32273 -27.53884 -25.65590 -25.60824 -24.00669 -23.13681 -22.11474
-21.70452 -20.21605 -18.99985 -17.25859 -17.07721 -16.72108 -16.62191 -16.37414
-15.84217 -15.31482 -15.27440 -14.88687 -14.37915 -14.18567 -14.11134 -13.81128
-13.37709 -13.35841 -13.01977 -12.91052 -12.68845 -12.55371 -12.37925 -12.20953
-11.89283 -11.71155 -11.31136 -11.25408 -11.00718 -10.82332 -10.63627 -10.55829
-10.19047 -10.05562 -9.82755 -9.79136 -9.60483 -9.15334 -9.05568 -8.98508
-8.33218 -6.98878 -5.77512 -3.07251 0.80731 1.06203 2.79632 3.09151
3.41104 3.46180 3.51436 3.54077 3.83424 4.41734 4.51051 4.59028
4.59859 4.79451 4.86749 4.95123 4.96278 5.02513 5.04837 5.13126
5.15512 5.27525 5.33178 5.34673 5.49528 5.56731 5.57032 5.69218
5.73585 5.82417 5.92803 6.06501 6.09957 6.14188 6.19536 6.23465
6.25387 6.37615 6.50662 6.61323 6.75584 6.77819 6.84363 7.02263
7.64646 7.73062 8.34829 8.41126 9.52570 10.06467 10.41956 11.44768
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.015592 B = 0.002983 C = 0.002760
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1795.382221 B = 9384.876102 C =10141.534786
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.384 6.384
3 C 0.103 3.897
4 C -0.098 4.098
5 C -0.083 4.083
6 C -0.127 4.127
7 C -0.085 4.085
8 C -0.118 4.118
9 C 0.553 3.447
10 O -0.535 6.535
11 N -0.597 5.597
12 C 0.097 3.903
13 C -0.130 4.130
14 C -0.126 4.126
15 C 0.169 3.831
16 H 0.051 0.949
17 N -0.718 5.718
18 C -0.242 4.242
19 H 0.072 0.928
20 C -0.011 4.011
21 N -0.933 5.933
22 Si 0.907 3.093
23 H -0.289 1.289
24 H -0.291 1.291
25 H -0.280 1.280
26 C 0.092 3.908
27 C -0.050 4.050
28 H 0.041 0.959
29 H 0.087 0.913
30 H 0.043 0.957
31 H 0.061 0.939
32 H 0.060 0.940
33 H 0.125 0.875
34 H 0.130 0.870
35 H 0.131 0.869
36 H 0.088 0.912
37 H 0.068 0.932
38 H 0.072 0.928
39 H 0.066 0.934
40 H 0.061 0.939
41 H 0.067 0.933
42 H 0.386 0.614
43 H 0.255 0.745
44 H 0.063 0.937
45 H 0.091 0.909
46 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.872 3.932 -24.028 27.541
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 O -0.304 6.304
3 C 0.027 3.973
4 C -0.098 4.098
5 C -0.102 4.102
6 C -0.145 4.145
7 C -0.103 4.103
8 C -0.121 4.121
9 C 0.340 3.660
10 O -0.413 6.413
11 N -0.330 5.330
12 C -0.026 4.026
13 C -0.169 4.169
14 C -0.164 4.164
15 C 0.057 3.943
16 H 0.069 0.931
17 N -0.358 5.358
18 C -0.373 4.373
19 H 0.089 0.911
20 C -0.207 4.207
21 N -0.581 5.581
22 Si 0.737 3.263
23 H -0.217 1.217
24 H -0.217 1.217
25 H -0.206 1.206
26 C -0.032 4.032
27 C -0.069 4.069
28 H 0.059 0.941
29 H 0.106 0.894
30 H 0.061 0.939
31 H 0.079 0.921
32 H 0.078 0.922
33 H 0.143 0.857
34 H 0.148 0.852
35 H 0.149 0.851
36 H 0.106 0.894
37 H 0.087 0.913
38 H 0.091 0.909
39 H 0.084 0.916
40 H 0.080 0.920
41 H 0.086 0.914
42 H 0.219 0.781
43 H 0.065 0.935
44 H 0.081 0.919
45 H 0.109 0.891
46 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges -12.939 4.250 -23.359 27.039
hybrid contribution -0.154 0.344 0.914 0.988
sum -13.093 4.594 -22.445 26.387
Atomic orbital electron populations
1.22773 0.80847 1.02992 1.00022 1.87986 1.19709 1.27253 1.95412
1.21339 0.89551 0.85273 1.01169 1.19476 0.94189 1.02889 0.93227
1.21163 0.94336 0.97283 0.97392 1.21065 0.94122 1.01335 0.97993
1.21387 1.00294 0.97259 0.91406 1.19983 0.94315 1.04094 0.93680
1.18350 0.79502 0.81538 0.86615 1.90804 1.65919 1.39493 1.45084
1.48212 1.40634 1.28952 1.15185 1.21950 1.01146 0.89107 0.90354
1.21810 1.01275 0.95661 0.98154 1.21827 0.99309 1.00626 0.94673
1.20489 0.96134 0.90778 0.86874 0.93137 1.42372 1.17836 1.74914
1.00711 1.19273 0.99253 1.34478 0.84313 0.91051 1.24744 0.96419
1.01627 0.97897 1.69662 1.10529 1.50325 1.27544 0.86189 0.77868
0.78191 0.84001 1.21671 1.21733 1.20581 1.22831 0.96185 1.01829
0.82334 1.21048 0.92519 0.95118 0.98167 0.94068 0.89435 0.93870
0.92106 0.92232 0.85660 0.85194 0.85066 0.89410 0.91347 0.90950
0.91572 0.92025 0.91386 0.78054 0.93471 0.91890 0.89095 0.85149
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.20 11.01 101.05 1.11 1.32 16
2 O -0.38 -3.94 10.69 -35.23 -0.38 -4.31 16
3 C 0.10 0.90 6.06 36.00 0.22 1.12 16
4 C -0.10 -1.02 5.50 -104.68 -0.58 -1.59 16
5 C -0.08 -0.73 9.69 -39.49 -0.38 -1.12 16
6 C -0.13 -1.08 10.03 -39.64 -0.40 -1.47 16
7 C -0.08 -0.88 7.36 -39.18 -0.29 -1.17 16
8 C -0.12 -1.58 5.00 -104.97 -0.53 -2.10 16
9 C 0.55 9.43 7.24 -12.33 -0.09 9.34 16
10 O -0.54 -11.33 16.47 5.31 0.09 -11.24 16
11 N -0.60 -9.60 2.98 -174.14 -0.52 -10.12 16
12 C 0.10 1.18 5.34 -3.93 -0.02 1.16 16
13 C -0.13 -1.64 6.07 -26.83 -0.16 -1.80 16
14 C -0.13 -2.02 5.36 -26.69 -0.14 -2.16 16
15 C 0.17 3.41 2.92 -67.81 -0.20 3.21 16
16 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16
17 N -0.72 -18.03 5.13 -53.31 -0.27 -18.30 16
18 C -0.24 -6.83 9.93 -15.06 -0.15 -6.98 16
19 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16
20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16
21 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16
22 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16
23 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16
24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16
25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16
26 C 0.09 1.79 6.01 -3.71 -0.02 1.77 16
27 C -0.05 -0.63 9.38 -39.19 -0.37 -1.00 16
28 H 0.04 0.21 8.14 -51.92 -0.42 -0.21 16
29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16
30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16
31 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16
32 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16
33 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16
34 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16
35 H 0.13 1.18 7.07 -52.48 -0.37 0.81 16
36 H 0.09 0.92 4.56 -51.93 -0.24 0.68 16
37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16
38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
41 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16
42 H 0.39 10.14 7.80 -40.82 -0.32 9.82 16
43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16
44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16
45 H 0.09 2.06 7.02 -51.93 -0.36 1.70 16
46 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16
LS Contribution 375.89 15.07 5.66 5.66
Total: -1.00 -33.94 375.89 -8.97 -42.92
By element:
Atomic # 1 Polarization: 14.10 SS G_CDS: -7.17 Total: 6.93 kcal
Atomic # 6 Polarization: 0.21 SS G_CDS: -2.09 Total: -1.88 kcal
Atomic # 7 Polarization: -55.85 SS G_CDS: -0.07 Total: -55.92 kcal
Atomic # 8 Polarization: -15.27 SS G_CDS: -0.29 Total: -15.56 kcal
Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal
Total LS contribution 5.66 Total: 5.66 kcal
Total: -33.94 -8.97 -42.92 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000999627318.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.880 kcal
(2) G-P(sol) polarization free energy of solvation -33.942 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.061 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.036 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds