Wall clock time and date at job start Tue Mar 31 2020 12:30:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42901 * 114.00462 * 2 1
4 4 C 1.50698 * 109.47580 * 179.97438 * 3 2 1
5 5 C 1.38385 * 119.92702 * 90.00066 * 4 3 2
6 6 C 1.38335 * 120.29369 * 180.02562 * 5 4 3
7 7 C 1.37984 * 120.14079 * 0.02562 * 6 5 4
8 8 C 1.39555 * 119.85516 * 0.27694 * 7 6 5
9 9 C 1.47847 * 120.14206 * 179.71989 * 8 7 6
10 10 O 1.21560 * 119.99714 * 129.45048 * 9 8 7
11 11 N 1.34766 * 120.00376 * 309.45173 * 9 8 7
12 12 C 1.46927 * 120.63029 * 3.50696 * 11 9 8
13 13 C 1.52766 * 109.00819 * 233.58533 * 12 11 9
14 14 C 1.53041 * 109.38191 * 305.58515 * 13 12 11
15 15 C 1.53042 * 109.53818 * 61.24367 * 14 13 12
16 16 H 1.09000 * 109.49828 * 58.57690 * 15 14 13
17 17 N 1.46500 * 109.52507 * 178.66573 * 15 14 13
18 18 C 1.36932 * 119.99699 * 204.85349 * 17 15 14
19 19 H 1.07998 * 120.00347 * 359.97438 * 18 17 15
20 20 C 1.38811 * 119.99731 * 180.02562 * 18 17 15
21 21 N 1.31617 * 120.00098 * 359.97438 * 20 18 17
22 22 Si 1.86806 * 120.00034 * 180.02562 * 20 18 17
23 23 H 1.48498 * 109.47304 * 89.99841 * 22 20 18
24 24 H 1.48499 * 109.46894 * 209.99561 * 22 20 18
25 25 H 1.48503 * 109.47036 * 329.99464 * 22 20 18
26 26 C 1.46929 * 120.63383 * 183.78860 * 11 9 8
27 27 C 1.37933 * 119.92761 * 269.98519 * 4 3 2
28 28 H 1.09008 * 109.46874 * 59.99567 * 1 2 3
29 29 H 1.09001 * 109.47228 * 179.97438 * 1 2 3
30 30 H 1.08996 * 109.47019 * 299.99927 * 1 2 3
31 31 H 1.09000 * 109.46622 * 59.99877 * 3 2 1
32 32 H 1.09006 * 109.47184 * 300.00496 * 3 2 1
33 33 H 1.07998 * 119.85003 * 359.97438 * 5 4 3
34 34 H 1.07990 * 119.93050 * 179.97438 * 6 5 4
35 35 H 1.08005 * 120.06983 * 180.02562 * 7 6 5
36 36 H 1.09003 * 109.58605 * 353.41938 * 12 11 9
37 37 H 1.08995 * 109.58595 * 113.84567 * 12 11 9
38 38 H 1.08999 * 109.56446 * 185.55289 * 13 12 11
39 39 H 1.08997 * 109.38586 * 65.51326 * 13 12 11
40 40 H 1.08996 * 109.46166 * 301.21686 * 14 13 12
41 41 H 1.09005 * 109.45876 * 181.25917 * 14 13 12
42 42 H 0.96997 * 119.99654 * 24.85289 * 17 15 14
43 43 H 0.97005 * 119.99961 * 180.02562 * 21 20 18
44 44 H 1.08997 * 109.58492 * 246.15577 * 26 11 9
45 45 H 1.09001 * 109.58284 * 6.57788 * 26 11 9
46 46 H 1.08004 * 120.07507 * 359.97438 * 27 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0103 1.3054 0.0000
4 6 3.5126 1.1864 0.0006
5 6 4.2013 1.1317 -1.1984
6 6 5.5803 1.0219 -1.2067
7 6 6.2780 0.9658 -0.0176
8 6 5.5891 1.0141 1.1951
9 6 6.3298 0.9481 2.4729
10 8 6.1224 1.7755 3.3391
11 7 7.2349 -0.0291 2.6775
12 6 7.5524 -0.9903 1.6126
13 6 7.3754 -2.4082 2.1531
14 6 8.2137 -2.5762 3.4223
15 6 7.7334 -1.5880 4.4876
16 1 6.6787 -1.7648 4.6988
17 7 8.5149 -1.7709 5.7131
18 6 7.9866 -1.4067 6.9228
19 1 6.9939 -0.9842 6.9734
20 6 8.7273 -1.5795 8.0840
21 7 9.9372 -2.0938 8.0223
22 14 8.0063 -1.0833 9.7343
23 1 7.2782 -2.2359 10.3231
24 1 9.1011 -0.6701 10.6486
25 1 7.0666 0.0506 9.5432
26 6 7.9186 -0.1574 3.9717
27 6 4.1981 1.1326 1.1963
28 1 -0.3633 0.5139 -0.8900
29 1 -0.3634 -1.0277 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 1.6887 1.8463 0.8900
32 1 1.6886 1.8464 -0.8900
33 1 3.6597 1.1741 -2.1318
34 1 6.1118 0.9793 -2.1458
35 1 7.3547 0.8805 -0.0254
36 1 6.8801 -0.8358 0.7686
37 1 8.5844 -0.8512 1.2906
38 1 7.7025 -3.1282 1.4030
39 1 6.3242 -2.5778 2.3862
40 1 9.2617 -2.3828 3.1936
41 1 8.1058 -3.5943 3.7966
42 1 9.4066 -2.1500 5.6676
43 1 10.4547 -2.2149 8.8338
44 1 8.9810 0.0510 3.8460
45 1 7.4878 0.5464 4.6838
46 1 3.6595 1.1761 2.1315
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000999627318.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:30:46
Heat of formation + Delta-G solvation = -60.653236 kcal
Electronic energy + Delta-G solvation = -26578.843733 eV
Core-core repulsion = 22853.867980 eV
Total energy + Delta-G solvation = -3724.975753 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.67979 -40.03334 -38.76104 -38.32176 -36.28114 -34.13557 -33.07281 -32.78726
-32.16854 -29.99698 -28.21305 -26.91522 -26.30607 -25.86869 -24.23677 -23.35441
-22.70703 -21.60988 -20.25643 -19.17136 -18.35478 -17.63644 -17.34075 -17.19499
-16.88215 -16.79199 -16.24364 -16.14250 -15.71209 -15.55062 -15.41103 -15.07866
-14.92631 -14.63602 -14.13020 -13.96815 -13.83142 -13.68098 -13.48696 -13.18285
-13.07016 -12.92067 -12.69820 -12.47551 -12.37136 -12.24365 -12.01999 -12.01301
-11.90418 -11.70097 -11.38479 -11.17135 -10.96357 -10.66372 -9.99532 -9.85112
-9.74633 -9.05331 -8.01259 -5.30676 -0.03695 0.26776 1.42296 1.43701
1.52813 1.55692 1.92752 2.51147 2.55860 3.13992 3.31444 3.39447
3.71802 3.80833 3.89191 3.96077 4.03524 4.05887 4.17192 4.23071
4.29373 4.33832 4.34751 4.39743 4.53699 4.57172 4.58273 4.60709
4.71517 4.82148 4.84351 4.87260 4.87686 4.97517 5.01516 5.10541
5.31824 5.34367 5.37481 5.40139 5.42949 5.49590 5.53339 5.88874
6.18653 6.21461 6.36056 7.02903 7.28241 7.99516 8.25918 9.21308
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.015592 B = 0.002983 C = 0.002760
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1795.382221 B = 9384.876102 C =10141.534786
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.411 6.411
3 C 0.101 3.899
4 C -0.103 4.103
5 C -0.074 4.074
6 C -0.113 4.113
7 C -0.083 4.083
8 C -0.139 4.139
9 C 0.547 3.453
10 O -0.593 6.593
11 N -0.595 5.595
12 C 0.093 3.907
13 C -0.122 4.122
14 C -0.117 4.117
15 C 0.168 3.832
16 H 0.027 0.973
17 N -0.728 5.728
18 C -0.247 4.247
19 H 0.063 0.937
20 C -0.066 4.066
21 N -0.963 5.963
22 Si 0.968 3.032
23 H -0.282 1.282
24 H -0.289 1.289
25 H -0.278 1.278
26 C 0.107 3.893
27 C -0.072 4.072
28 H 0.060 0.940
29 H 0.094 0.906
30 H 0.044 0.956
31 H 0.056 0.944
32 H 0.087 0.913
33 H 0.159 0.841
34 H 0.170 0.830
35 H 0.149 0.851
36 H 0.113 0.887
37 H 0.094 0.906
38 H 0.114 0.886
39 H 0.056 0.944
40 H 0.071 0.929
41 H 0.062 0.938
42 H 0.379 0.621
43 H 0.254 0.746
44 H 0.064 0.936
45 H 0.046 0.954
46 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.448 3.531 -28.058 31.314
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.071 4.071
2 O -0.331 6.331
3 C 0.025 3.975
4 C -0.103 4.103
5 C -0.092 4.092
6 C -0.131 4.131
7 C -0.102 4.102
8 C -0.142 4.142
9 C 0.337 3.663
10 O -0.475 6.475
11 N -0.326 5.326
12 C -0.028 4.028
13 C -0.160 4.160
14 C -0.155 4.155
15 C 0.058 3.942
16 H 0.046 0.954
17 N -0.368 5.368
18 C -0.379 4.379
19 H 0.081 0.919
20 C -0.259 4.259
21 N -0.612 5.612
22 Si 0.797 3.203
23 H -0.209 1.209
24 H -0.215 1.215
25 H -0.204 1.204
26 C -0.018 4.018
27 C -0.091 4.091
28 H 0.079 0.921
29 H 0.112 0.888
30 H 0.063 0.937
31 H 0.074 0.926
32 H 0.105 0.895
33 H 0.176 0.824
34 H 0.188 0.812
35 H 0.166 0.834
36 H 0.131 0.869
37 H 0.112 0.888
38 H 0.132 0.868
39 H 0.075 0.925
40 H 0.090 0.910
41 H 0.081 0.919
42 H 0.211 0.789
43 H 0.063 0.937
44 H 0.082 0.918
45 H 0.065 0.935
46 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges -13.543 3.828 -27.452 30.849
hybrid contribution -0.062 0.484 2.053 2.111
sum -13.604 4.312 -25.399 29.134
Atomic orbital electron populations
1.22943 0.79317 1.03821 1.01062 1.87932 1.21500 1.28065 1.95635
1.21428 0.88642 0.85101 1.02328 1.19702 0.95181 1.02488 0.92977
1.21607 0.94827 0.95030 0.97763 1.21503 0.94054 0.98914 0.98590
1.21594 1.01173 0.96713 0.90703 1.19719 0.94300 1.07407 0.92755
1.19072 0.79076 0.80642 0.87549 1.90758 1.67540 1.41734 1.47435
1.48242 1.40049 1.29660 1.14689 1.22315 1.03304 0.87557 0.89578
1.21806 1.00044 0.96997 0.97181 1.21737 1.00436 0.98606 0.94759
1.20633 0.94373 0.92510 0.86688 0.95440 1.42483 1.17866 1.74954
1.01511 1.19495 0.98928 1.33613 0.85889 0.91917 1.25482 0.96982
1.02379 1.01078 1.69787 1.11591 1.51742 1.28126 0.85226 0.77135
0.77918 0.80017 1.20918 1.21540 1.20369 1.22276 0.96070 0.99877
0.83619 1.21005 0.92567 0.96990 0.98533 0.92138 0.88802 0.93705
0.92564 0.89457 0.82390 0.81210 0.83365 0.86878 0.88777 0.86778
0.92534 0.91012 0.91923 0.78861 0.93735 0.91765 0.93504 0.87534
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.29 11.01 113.37 1.25 1.54 16
2 O -0.41 -7.85 10.69 -148.98 -1.59 -9.44 16
3 C 0.10 1.61 6.06 71.24 0.43 2.05 16
4 C -0.10 -1.98 5.50 -19.90 -0.11 -2.09 16
5 C -0.07 -0.99 9.69 22.33 0.22 -0.78 16
6 C -0.11 -1.36 10.03 22.23 0.22 -1.14 16
7 C -0.08 -1.47 7.36 22.53 0.17 -1.31 16
8 C -0.14 -3.68 5.00 -20.09 -0.10 -3.78 16
9 C 0.55 19.46 7.24 86.79 0.63 20.09 16
10 O -0.59 -27.17 16.47 -3.90 -0.06 -27.23 16
11 N -0.60 -19.36 2.98 -823.13 -2.45 -21.81 16
12 C 0.09 2.02 5.34 86.22 0.46 2.48 16
13 C -0.12 -2.75 6.07 30.53 0.19 -2.56 16
14 C -0.12 -3.65 5.36 30.62 0.16 -3.48 16
15 C 0.17 7.04 2.92 45.07 0.13 7.17 16
16 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16
17 N -0.73 -38.02 5.13 -322.57 -1.65 -39.68 16
18 C -0.25 -14.52 9.93 84.03 0.83 -13.68 16
19 H 0.06 3.71 7.83 -2.91 -0.02 3.68 16
20 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16
21 N -0.96 -59.59 13.06 21.65 0.28 -59.31 16
22 Si 0.97 48.22 29.55 68.60 2.03 50.25 16
23 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16
24 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16
25 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16
26 C 0.11 4.37 6.01 86.36 0.52 4.89 16
27 C -0.07 -1.86 9.38 22.53 0.21 -1.65 16
28 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16
29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16
30 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16
31 H 0.06 0.91 8.08 -2.39 -0.02 0.89 16
32 H 0.09 0.89 8.09 -2.38 -0.02 0.87 16
33 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16
34 H 0.17 0.78 8.06 -2.92 -0.02 0.75 16
35 H 0.15 2.07 7.07 -2.91 -0.02 2.05 16
36 H 0.11 1.96 4.56 -2.39 -0.01 1.95 16
37 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16
38 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16
39 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
41 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16
42 H 0.38 20.57 7.80 -92.71 -0.72 19.84 16
43 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16
44 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16
45 H 0.05 2.31 7.02 -2.39 -0.02 2.29 16
46 H 0.11 3.12 8.06 -2.91 -0.02 3.10 16
Total: -1.00 -79.34 375.89 2.48 -76.86
By element:
Atomic # 1 Polarization: 25.82 SS G_CDS: 0.25 Total: 26.07 kcal
Atomic # 6 Polarization: -1.39 SS G_CDS: 5.68 Total: 4.29 kcal
Atomic # 7 Polarization: -116.97 SS G_CDS: -3.82 Total: -120.79 kcal
Atomic # 8 Polarization: -35.02 SS G_CDS: -1.66 Total: -36.68 kcal
Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal
Total: -79.34 2.48 -76.86 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000999627318.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.207 kcal
(2) G-P(sol) polarization free energy of solvation -79.338 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.131 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.860 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.653 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds