Wall clock time and date at job start Tue Mar 31 2020 12:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99970 * 2 1 4 4 C 1.50703 * 109.47167 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99560 * 359.97438 * 4 3 2 6 6 C 1.38214 * 119.99459 * 179.97438 * 5 4 3 7 7 C 1.38257 * 120.00453 * 0.02562 * 6 5 4 8 8 C 1.38216 * 119.99848 * 359.76682 * 7 6 5 9 9 C 1.38211 * 120.00017 * 180.02562 * 4 3 2 10 10 C 1.50692 * 120.00115 * 359.97438 * 9 4 3 11 11 C 1.50699 * 109.47782 * 84.99759 * 10 9 4 12 12 O 1.21286 * 119.99670 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00534 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00272 * 179.97438 * 13 11 10 15 15 H 1.09004 * 110.91386 * 328.90214 * 14 13 11 16 16 C 1.55157 * 111.00680 * 204.99847 * 14 13 11 17 17 C 1.54321 * 103.10033 * 277.51720 * 16 14 13 18 18 N 1.47019 * 107.27531 * 337.71659 * 17 16 14 19 19 C 1.36931 * 125.65157 * 178.90454 * 18 17 16 20 20 H 1.07998 * 120.00396 * 180.02562 * 19 18 17 21 21 C 1.38821 * 119.99902 * 0.02562 * 19 18 17 22 22 N 1.31616 * 119.99909 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99845 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47244 * 90.00077 * 23 21 19 25 25 H 1.48500 * 109.46885 * 210.00045 * 23 21 19 26 26 H 1.48496 * 109.47319 * 329.99741 * 23 21 19 27 27 C 1.47431 * 108.70142 * 358.94050 * 18 17 16 28 28 H 1.08998 * 109.47756 * 59.99384 * 1 2 3 29 29 H 1.08997 * 109.47533 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47048 * 299.99664 * 1 2 3 31 31 H 1.09003 * 109.46849 * 60.00679 * 3 2 1 32 32 H 1.08998 * 109.47585 * 300.00766 * 3 2 1 33 33 H 1.07997 * 120.00283 * 359.97438 * 5 4 3 34 34 H 1.08002 * 119.99815 * 180.02562 * 6 5 4 35 35 H 1.08001 * 119.99987 * 179.97438 * 7 6 5 36 36 H 1.07995 * 120.00114 * 180.25457 * 8 7 6 37 37 H 1.09002 * 109.47056 * 324.99392 * 10 9 4 38 38 H 1.09007 * 109.46945 * 204.99900 * 10 9 4 39 39 H 0.97001 * 119.99350 * 359.97438 * 13 11 10 40 40 H 1.09002 * 110.72219 * 159.06416 * 16 14 13 41 41 H 1.09003 * 110.71618 * 35.97029 * 16 14 13 42 42 H 1.09001 * 109.88480 * 97.13771 * 17 16 14 43 43 H 1.09004 * 109.87910 * 218.29695 * 17 16 14 44 44 H 0.96994 * 119.99831 * 179.97438 * 22 21 19 45 45 H 1.08999 * 110.36190 * 142.96411 * 27 18 17 46 46 H 1.08999 * 110.36356 * 265.28933 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1070 -0.0618 -0.0006 6 6 5.4849 -0.1709 -0.0017 7 6 6.2686 0.9681 -0.0023 8 6 5.6742 2.2159 -0.0067 9 6 4.2959 2.3251 -0.0002 10 6 3.6479 3.6856 0.0003 11 6 3.3199 4.0854 1.4158 12 8 3.5859 3.3388 2.3339 13 7 2.7302 5.2722 1.6615 14 6 2.4110 5.6605 3.0374 15 1 2.1841 4.7852 3.6461 16 6 1.2413 6.6794 3.0706 17 6 1.9421 8.0257 2.7913 18 7 3.3582 7.8637 3.1514 19 6 4.3271 8.8239 3.0315 20 1 5.3433 8.6052 3.3245 21 6 4.0031 10.0784 2.5332 22 7 2.7648 10.3447 2.1756 23 14 5.3250 11.3880 2.3689 24 1 5.9536 11.2912 1.0270 25 1 4.7140 12.7314 2.5336 26 1 6.3582 11.1825 3.4155 27 6 3.5626 6.4959 3.6624 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6886 1.8463 0.8901 32 1 1.6885 1.8465 -0.8899 33 1 3.4949 -0.9515 0.0004 34 1 5.9493 -1.1459 -0.0021 35 1 7.3452 0.8828 -0.0028 36 1 6.2864 3.1056 -0.0114 37 1 2.7317 3.6518 -0.5893 38 1 4.3325 4.4143 -0.4338 39 1 2.5173 5.8691 0.9272 40 1 0.7654 6.6885 4.0512 41 1 0.5124 6.4551 2.2918 42 1 1.8548 8.2767 1.7342 43 1 1.4924 8.8108 3.3992 44 1 2.5384 11.2214 1.8278 45 1 4.5293 6.1105 3.3383 46 1 3.4933 6.4831 4.7501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015828297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:04 Heat of formation + Delta-G solvation = -32.114087 kcal Electronic energy + Delta-G solvation = -26756.353594 eV Core-core repulsion = 23032.615392 eV Total energy + Delta-G solvation = -3723.738202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.22443 -39.02946 -37.70375 -37.14080 -33.71534 -33.13567 -31.87924 -31.61572 -29.28807 -28.23297 -27.37927 -26.65983 -25.57359 -24.44787 -22.18773 -21.44492 -20.32603 -20.05909 -19.74832 -17.21019 -16.84041 -16.76760 -16.65167 -16.03454 -15.78403 -15.28954 -15.08080 -14.65676 -14.41367 -14.32267 -13.88475 -13.78890 -13.47027 -13.02611 -12.95083 -12.68093 -12.62109 -12.14491 -11.98414 -11.89911 -11.80895 -11.72014 -10.99518 -10.98676 -10.92679 -10.88911 -10.72047 -10.37493 -10.15563 -10.04568 -9.98124 -9.70418 -9.60417 -8.76509 -8.74292 -8.59429 -8.52856 -6.84829 -5.74942 -3.07419 1.29879 1.42805 2.89614 3.37430 3.43450 3.45025 3.45260 3.50362 3.86627 4.47737 4.59555 4.72100 4.90516 4.99889 5.04062 5.10571 5.11188 5.15119 5.24994 5.32840 5.35782 5.40997 5.44637 5.45427 5.46530 5.53616 5.70750 5.74829 5.81352 5.96663 6.06815 6.18860 6.35140 6.39262 6.46851 6.50808 6.52518 6.55933 6.67603 6.95018 7.01027 7.04036 7.50503 7.53111 7.76571 7.87936 8.21916 8.53871 9.19364 9.79257 10.45136 11.36996 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.003096 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.897975 B = 9040.814669 C =10084.120843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.102 3.898 4 C -0.075 4.075 5 C -0.098 4.098 6 C -0.125 4.125 7 C -0.120 4.120 8 C -0.105 4.105 9 C -0.054 4.054 10 C -0.110 4.110 11 C 0.513 3.487 12 O -0.539 6.539 13 N -0.705 5.705 14 C 0.128 3.872 15 H 0.089 0.911 16 C -0.154 4.154 17 C 0.176 3.824 18 N -0.604 5.604 19 C -0.225 4.225 20 H 0.076 0.924 21 C -0.009 4.009 22 N -0.924 5.924 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.126 3.874 28 H 0.041 0.959 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.129 0.871 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.403 0.597 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.046 0.954 43 H 0.044 0.956 44 H 0.252 0.748 45 H 0.042 0.958 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.966 -18.833 -7.519 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.026 3.974 4 C -0.075 4.075 5 C -0.116 4.116 6 C -0.143 4.143 7 C -0.138 4.138 8 C -0.123 4.123 9 C -0.054 4.054 10 C -0.150 4.150 11 C 0.298 3.702 12 O -0.417 6.417 13 N -0.355 5.355 14 C 0.022 3.978 15 H 0.107 0.893 16 C -0.193 4.193 17 C 0.051 3.949 18 N -0.331 5.331 19 C -0.353 4.353 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.572 5.572 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.002 4.002 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.147 0.853 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.117 0.883 38 H 0.124 0.876 39 H 0.237 0.763 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.662 -19.291 -6.906 20.662 hybrid contribution 0.389 1.462 -0.398 1.564 sum -2.273 -17.830 -7.303 19.401 Atomic orbital electron populations 1.22749 0.80773 1.02800 1.00209 1.87823 1.19783 1.27545 1.95499 1.21284 0.90517 0.84902 1.00690 1.19384 0.93575 0.93419 1.01144 1.20903 0.94464 0.97247 0.98976 1.21126 0.93835 0.98406 1.00917 1.21098 0.99737 0.92501 1.00426 1.20957 0.93671 0.97888 0.99826 1.18978 0.93447 0.92765 1.00257 1.20732 1.02790 0.95714 0.95719 1.20352 0.77619 0.81491 0.90689 1.90709 1.52650 1.52164 1.46136 1.45853 1.61216 1.18735 1.09743 1.22209 0.96390 0.96757 0.82428 0.89276 1.23220 0.96655 0.97873 1.01507 1.21166 0.83381 0.90602 0.99714 1.44472 1.05496 1.08199 1.74909 1.19058 0.89310 0.90796 1.36123 0.90570 1.24774 0.96644 0.97582 1.01483 1.69946 1.16376 1.21615 1.49227 0.86125 0.80607 0.81273 0.77813 1.21663 1.21702 1.20737 1.22017 0.96097 0.86241 0.95799 0.93994 0.89537 0.93838 0.91604 0.92089 0.85262 0.86232 0.86142 0.85879 0.88348 0.87581 0.76288 0.91054 0.91697 0.93607 0.93812 0.93814 0.94017 0.95544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.44 9.18 -35.23 -0.32 -4.77 16 3 C 0.10 1.18 5.11 36.01 0.18 1.36 16 4 C -0.08 -0.97 5.88 -104.62 -0.62 -1.59 16 5 C -0.10 -1.21 9.38 -39.58 -0.37 -1.58 16 6 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 7 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 8 C -0.11 -1.33 9.68 -39.58 -0.38 -1.71 16 9 C -0.05 -0.70 4.37 -104.63 -0.46 -1.16 16 10 C -0.11 -1.31 5.33 -29.04 -0.15 -1.46 16 11 C 0.51 7.96 7.47 -10.99 -0.08 7.87 16 12 O -0.54 -10.27 15.68 5.55 0.09 -10.18 16 13 N -0.71 -11.08 5.19 -51.48 -0.27 -11.35 16 14 C 0.13 2.24 3.46 -65.52 -0.23 2.02 16 15 H 0.09 1.54 7.54 -51.93 -0.39 1.15 16 16 C -0.15 -2.66 6.53 -24.90 -0.16 -2.82 16 17 C 0.18 4.02 5.36 -3.07 -0.02 4.01 16 18 N -0.60 -14.97 3.40 -169.76 -0.58 -15.55 16 19 C -0.22 -6.17 10.28 -15.06 -0.15 -6.32 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -26.32 10.31 55.49 0.57 -25.75 16 23 Si 0.91 21.86 29.55 -169.99 -5.02 16.83 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 27 C 0.13 2.66 6.95 -2.26 -0.02 2.65 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.83 7.78 -51.93 -0.40 0.43 16 32 H 0.06 0.59 7.51 -51.93 -0.39 0.20 16 33 H 0.13 1.50 7.01 -52.49 -0.37 1.13 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 37 H 0.10 0.93 6.84 -51.93 -0.36 0.57 16 38 H 0.11 1.13 8.05 -51.93 -0.42 0.71 16 39 H 0.40 5.91 8.67 -40.82 -0.35 5.56 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 1.13 7.38 -51.93 -0.38 0.75 16 43 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 44 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 376.62 15.07 5.68 5.68 Total: -1.00 -32.74 376.62 -9.32 -42.06 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.23 Total: 4.31 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.23 Total: -1.29 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.27 Total: -52.64 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.24 Total: -14.95 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.74 -9.32 -42.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015828297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.947 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds