Wall clock time and date at job start Tue Mar 31 2020 12:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99970 * 2 1 4 4 C 1.50703 * 109.47167 * 180.02562 * 3 2 1 5 5 C 1.38260 * 119.99560 * 359.97438 * 4 3 2 6 6 C 1.38214 * 119.99459 * 179.97438 * 5 4 3 7 7 C 1.38257 * 120.00453 * 0.02562 * 6 5 4 8 8 C 1.38216 * 119.99848 * 359.76682 * 7 6 5 9 9 C 1.38211 * 120.00017 * 180.02562 * 4 3 2 10 10 C 1.50692 * 120.00115 * 359.97438 * 9 4 3 11 11 C 1.50699 * 109.47782 * 84.99759 * 10 9 4 12 12 O 1.21286 * 119.99670 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00534 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00272 * 179.97438 * 13 11 10 15 15 H 1.09004 * 110.91386 * 328.90214 * 14 13 11 16 16 C 1.55157 * 111.00680 * 204.99847 * 14 13 11 17 17 C 1.54321 * 103.10033 * 277.51720 * 16 14 13 18 18 N 1.47019 * 107.27531 * 337.71659 * 17 16 14 19 19 C 1.36931 * 125.65157 * 178.90454 * 18 17 16 20 20 H 1.07998 * 120.00396 * 180.02562 * 19 18 17 21 21 C 1.38821 * 119.99902 * 0.02562 * 19 18 17 22 22 N 1.31616 * 119.99909 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99845 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47244 * 90.00077 * 23 21 19 25 25 H 1.48500 * 109.46885 * 210.00045 * 23 21 19 26 26 H 1.48496 * 109.47319 * 329.99741 * 23 21 19 27 27 C 1.47431 * 108.70142 * 358.94050 * 18 17 16 28 28 H 1.08998 * 109.47756 * 59.99384 * 1 2 3 29 29 H 1.08997 * 109.47533 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47048 * 299.99664 * 1 2 3 31 31 H 1.09003 * 109.46849 * 60.00679 * 3 2 1 32 32 H 1.08998 * 109.47585 * 300.00766 * 3 2 1 33 33 H 1.07997 * 120.00283 * 359.97438 * 5 4 3 34 34 H 1.08002 * 119.99815 * 180.02562 * 6 5 4 35 35 H 1.08001 * 119.99987 * 179.97438 * 7 6 5 36 36 H 1.07995 * 120.00114 * 180.25457 * 8 7 6 37 37 H 1.09002 * 109.47056 * 324.99392 * 10 9 4 38 38 H 1.09007 * 109.46945 * 204.99900 * 10 9 4 39 39 H 0.97001 * 119.99350 * 359.97438 * 13 11 10 40 40 H 1.09002 * 110.72219 * 159.06416 * 16 14 13 41 41 H 1.09003 * 110.71618 * 35.97029 * 16 14 13 42 42 H 1.09001 * 109.88480 * 97.13771 * 17 16 14 43 43 H 1.09004 * 109.87910 * 218.29695 * 17 16 14 44 44 H 0.96994 * 119.99831 * 179.97438 * 22 21 19 45 45 H 1.08999 * 110.36190 * 142.96411 * 27 18 17 46 46 H 1.08999 * 110.36356 * 265.28933 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1070 -0.0618 -0.0006 6 6 5.4849 -0.1709 -0.0017 7 6 6.2686 0.9681 -0.0023 8 6 5.6742 2.2159 -0.0067 9 6 4.2959 2.3251 -0.0002 10 6 3.6479 3.6856 0.0003 11 6 3.3199 4.0854 1.4158 12 8 3.5859 3.3388 2.3339 13 7 2.7302 5.2722 1.6615 14 6 2.4110 5.6605 3.0374 15 1 2.1841 4.7852 3.6461 16 6 1.2413 6.6794 3.0706 17 6 1.9421 8.0257 2.7913 18 7 3.3582 7.8637 3.1514 19 6 4.3271 8.8239 3.0315 20 1 5.3433 8.6052 3.3245 21 6 4.0031 10.0784 2.5332 22 7 2.7648 10.3447 2.1756 23 14 5.3250 11.3880 2.3689 24 1 5.9536 11.2912 1.0270 25 1 4.7140 12.7314 2.5336 26 1 6.3582 11.1825 3.4155 27 6 3.5626 6.4959 3.6624 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6886 1.8463 0.8901 32 1 1.6885 1.8465 -0.8899 33 1 3.4949 -0.9515 0.0004 34 1 5.9493 -1.1459 -0.0021 35 1 7.3452 0.8828 -0.0028 36 1 6.2864 3.1056 -0.0114 37 1 2.7317 3.6518 -0.5893 38 1 4.3325 4.4143 -0.4338 39 1 2.5173 5.8691 0.9272 40 1 0.7654 6.6885 4.0512 41 1 0.5124 6.4551 2.2918 42 1 1.8548 8.2767 1.7342 43 1 1.4924 8.8108 3.3992 44 1 2.5384 11.2214 1.8278 45 1 4.5293 6.1105 3.3383 46 1 3.4933 6.4831 4.7501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015828297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:29:03 Heat of formation + Delta-G solvation = -52.479866 kcal Electronic energy + Delta-G solvation = -26757.236721 eV Core-core repulsion = 23032.615392 eV Total energy + Delta-G solvation = -3724.621329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.31522 -40.18938 -38.78292 -38.43619 -35.37340 -34.15284 -33.49341 -32.58767 -31.04268 -29.46609 -28.52096 -27.75933 -26.40864 -26.31319 -23.23542 -22.47365 -21.95536 -21.43117 -21.09246 -18.95248 -18.08498 -17.76888 -17.58863 -17.17191 -16.80368 -16.65023 -16.31799 -16.00197 -15.69603 -15.39335 -15.33357 -15.11965 -14.78752 -14.10399 -14.05394 -13.83616 -13.80310 -13.56335 -13.47492 -13.04697 -12.95614 -12.85272 -12.79424 -12.44167 -12.26142 -12.11093 -12.01788 -11.84807 -11.80872 -11.74641 -11.58866 -10.91362 -10.80407 -10.71537 -10.02864 -9.67723 -9.49419 -8.85976 -7.85038 -5.19052 0.39366 0.51042 1.46433 1.47208 1.55952 1.67895 2.28270 2.49378 2.75146 2.90533 3.33988 3.66210 3.68158 3.79084 3.86669 4.02410 4.07177 4.10317 4.18340 4.29266 4.32484 4.34582 4.41666 4.54746 4.55169 4.60913 4.68465 4.69215 4.76042 4.80556 4.87366 4.90379 4.99570 5.04209 5.11448 5.18137 5.44729 5.53120 5.60376 5.63704 5.65591 5.69084 5.77739 6.11576 6.20275 6.20435 6.63921 7.12248 7.30757 7.77534 8.41783 9.24800 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.016936 B = 0.003096 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.897975 B = 9040.814669 C =10084.120843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.105 3.895 4 C -0.091 4.091 5 C -0.112 4.112 6 C -0.127 4.127 7 C -0.126 4.126 8 C -0.122 4.122 9 C -0.070 4.070 10 C -0.102 4.102 11 C 0.515 3.485 12 O -0.576 6.576 13 N -0.703 5.703 14 C 0.142 3.858 15 H 0.099 0.901 16 C -0.133 4.133 17 C 0.184 3.816 18 N -0.620 5.620 19 C -0.242 4.242 20 H 0.072 0.928 21 C -0.058 4.058 22 N -0.945 5.945 23 Si 0.974 3.026 24 H -0.284 1.284 25 H -0.294 1.294 26 H -0.276 1.276 27 C 0.123 3.877 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.132 0.868 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.409 0.591 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.023 0.977 43 H 0.007 0.993 44 H 0.247 0.753 45 H 0.027 0.973 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.058 -19.897 -8.437 21.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.029 3.971 4 C -0.091 4.091 5 C -0.130 4.130 6 C -0.145 4.145 7 C -0.144 4.144 8 C -0.140 4.140 9 C -0.071 4.071 10 C -0.141 4.141 11 C 0.303 3.697 12 O -0.455 6.455 13 N -0.353 5.353 14 C 0.036 3.964 15 H 0.117 0.883 16 C -0.172 4.172 17 C 0.060 3.940 18 N -0.347 5.347 19 C -0.371 4.371 20 H 0.090 0.910 21 C -0.252 4.252 22 N -0.594 5.594 23 Si 0.802 3.198 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.201 1.201 27 C -0.004 4.004 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.150 0.850 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.147 0.853 37 H 0.144 0.856 38 H 0.138 0.862 39 H 0.245 0.755 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.041 0.959 43 H 0.025 0.975 44 H 0.057 0.943 45 H 0.045 0.955 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -2.758 -20.375 -7.834 22.003 hybrid contribution 0.444 1.732 -0.075 1.790 sum -2.315 -18.643 -7.909 20.383 Atomic orbital electron populations 1.22949 0.79205 1.04096 1.00866 1.87795 1.21545 1.27556 1.95612 1.21243 0.89848 0.85120 1.00849 1.19656 0.94515 0.93686 1.01236 1.21097 0.95186 0.97332 0.99397 1.21450 0.93563 0.99582 0.99869 1.21413 1.01014 0.92177 0.99821 1.21221 0.93914 0.98748 1.00152 1.19140 0.93790 0.93188 1.00959 1.20742 1.04373 0.95560 0.93466 1.20929 0.76321 0.80652 0.91809 1.90693 1.54017 1.53152 1.47668 1.45835 1.61276 1.19067 1.09129 1.21977 0.94570 0.96414 0.83451 0.88296 1.23069 0.96572 0.94080 1.03481 1.20958 0.82856 0.92747 0.97486 1.44695 1.05925 1.09123 1.74941 1.19337 0.89932 0.91826 1.35968 0.90968 1.25515 0.98627 0.99401 1.01635 1.70138 1.17822 1.21637 1.49815 0.85153 0.78318 0.78398 0.77890 1.21083 1.21998 1.20093 1.22128 0.97015 0.85302 0.95950 0.92604 0.88028 0.93868 0.93010 0.90138 0.84983 0.83844 0.84002 0.85332 0.85565 0.86218 0.75524 0.89519 0.88657 0.95872 0.97462 0.94323 0.95459 0.95528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -8.81 9.18 -148.98 -1.37 -10.18 16 3 C 0.11 2.30 5.11 71.24 0.36 2.66 16 4 C -0.09 -2.26 5.88 -19.86 -0.12 -2.38 16 5 C -0.11 -2.67 9.38 22.27 0.21 -2.46 16 6 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 7 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 8 C -0.12 -2.96 9.68 22.27 0.22 -2.74 16 9 C -0.07 -1.75 4.37 -19.87 -0.09 -1.84 16 10 C -0.10 -2.26 5.33 29.10 0.16 -2.10 16 11 C 0.52 15.34 7.47 87.66 0.65 15.99 16 12 O -0.58 -21.55 15.68 -3.05 -0.05 -21.60 16 13 N -0.70 -21.05 5.19 -435.17 -2.26 -23.30 16 14 C 0.14 4.79 3.46 46.55 0.16 4.96 16 15 H 0.10 3.24 7.54 -2.39 -0.02 3.22 16 16 C -0.13 -4.38 6.53 31.78 0.21 -4.17 16 17 C 0.18 8.46 5.36 86.73 0.47 8.93 16 18 N -0.62 -31.02 3.40 -691.01 -2.35 -33.37 16 19 C -0.24 -13.43 10.28 84.04 0.86 -12.56 16 20 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 21 C -0.06 -3.25 5.49 84.86 0.47 -2.78 16 22 N -0.95 -54.67 10.31 21.65 0.22 -54.44 16 23 Si 0.97 45.15 29.55 68.60 2.03 47.18 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 27 C 0.12 5.18 6.95 87.02 0.60 5.79 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.05 1.26 7.78 -2.39 -0.02 1.24 16 32 H 0.08 1.38 7.51 -2.39 -0.02 1.36 16 33 H 0.13 2.97 7.01 -2.91 -0.02 2.95 16 34 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.13 2.83 8.06 -2.91 -0.02 2.80 16 37 H 0.13 2.05 6.84 -2.39 -0.02 2.03 16 38 H 0.12 2.32 8.05 -2.38 -0.02 2.30 16 39 H 0.41 11.33 8.67 -92.71 -0.80 10.52 16 40 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 41 H 0.09 2.59 8.14 -2.39 -0.02 2.58 16 42 H 0.02 1.15 7.38 -2.39 -0.02 1.14 16 43 H 0.01 0.38 7.51 -2.38 -0.02 0.36 16 44 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 45 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -71.41 376.62 2.26 -69.15 By element: Atomic # 1 Polarization: 22.43 SS G_CDS: 0.17 Total: 22.61 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 5.86 Total: 3.95 kcal Atomic # 7 Polarization: -106.73 SS G_CDS: -4.38 Total: -111.12 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -1.42 Total: -31.77 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -71.41 2.26 -69.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015828297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.673 kcal (2) G-P(sol) polarization free energy of solvation -71.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds