Wall clock time and date at job start Tue Mar 31 2020 12:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35903 * 116.99920 * 2 1 4 4 C 1.38751 * 120.05603 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94749 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05145 * 359.74975 * 5 4 3 7 7 C 1.38250 * 120.10961 * 0.50274 * 6 5 4 8 8 C 1.50703 * 119.96839 * 179.76911 * 7 6 5 9 9 C 1.53000 * 109.47118 * 269.72347 * 8 7 6 10 10 C 1.50703 * 109.47118 * 179.97438 * 9 8 7 11 11 O 1.21277 * 119.99734 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99698 * 180.02562 * 10 9 8 13 13 C 1.47015 * 125.65008 * 0.02562 * 12 10 9 14 14 C 1.54325 * 107.27065 * 178.92146 * 13 12 10 15 15 C 1.55157 * 102.94374 * 337.80787 * 14 13 12 16 16 H 1.09000 * 111.00346 * 277.43176 * 15 14 13 17 17 N 1.46495 * 111.00828 * 153.57764 * 15 14 13 18 18 C 1.36931 * 120.00138 * 86.45378 * 17 15 14 19 19 H 1.07995 * 120.00264 * 0.02562 * 18 17 15 20 20 C 1.38819 * 120.00065 * 180.02562 * 18 17 15 21 21 N 1.31616 * 119.99932 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00002 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47128 * 59.99767 * 22 20 18 24 24 H 1.48495 * 109.46915 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46646 * 299.99439 * 22 20 18 26 26 C 1.47425 * 125.64110 * 180.02562 * 12 10 9 27 27 C 1.38161 * 120.05547 * 359.49890 * 7 6 5 28 28 H 1.09001 * 109.47451 * 299.99928 * 1 2 3 29 29 H 1.09005 * 109.47225 * 59.99974 * 1 2 3 30 30 H 1.08999 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.02850 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.97523 * 180.02562 * 5 4 3 33 33 H 1.07995 * 119.94647 * 180.27756 * 6 5 4 34 34 H 1.09000 * 109.46755 * 149.72621 * 8 7 6 35 35 H 1.08999 * 109.47144 * 29.72434 * 8 7 6 36 36 H 1.09007 * 109.46721 * 60.00484 * 9 8 7 37 37 H 1.08992 * 109.47575 * 300.00606 * 9 8 7 38 38 H 1.09000 * 109.88350 * 59.50355 * 13 12 10 39 39 H 1.08997 * 110.01690 * 298.40870 * 13 12 10 40 40 H 1.08996 * 110.72124 * 219.44887 * 14 13 12 41 41 H 1.08999 * 110.87305 * 96.24314 * 14 13 12 42 42 H 0.97007 * 119.99772 * 266.45600 * 17 15 14 43 43 H 0.96996 * 120.00248 * 180.02562 * 21 20 18 44 44 H 1.08999 * 110.36633 * 85.31776 * 26 12 10 45 45 H 1.08996 * 110.37033 * 322.98156 * 26 12 10 46 46 H 1.08007 * 120.02651 * 180.23572 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6758 0.0063 7 6 4.0559 2.5171 0.0005 8 6 5.5608 2.5982 0.0010 9 6 6.0704 2.6260 -1.4414 10 6 7.5753 2.7078 -1.4409 11 8 8.1804 2.7401 -0.3904 12 7 8.2484 2.7449 -2.6080 13 6 7.6434 2.7132 -3.9475 14 6 8.7939 2.8038 -4.9721 15 6 9.9404 3.4510 -4.1510 16 1 9.8318 4.5350 -4.1157 17 7 11.2496 3.0738 -4.6893 18 6 11.8070 3.8013 -5.7067 19 1 11.2818 4.6533 -6.1120 20 6 13.0474 3.4435 -6.2171 21 7 13.6879 2.4053 -5.7227 22 14 13.8082 4.4363 -7.6045 23 1 13.9937 5.8420 -7.1633 24 1 15.1254 3.8534 -7.9657 25 1 12.9105 4.4028 -8.7870 26 6 9.7134 2.8240 -2.7525 27 6 3.4311 1.2849 -0.0001 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2128 2.3204 0.0005 32 1 1.3339 4.5114 0.0019 33 1 3.7922 4.6380 0.0112 34 1 5.9713 1.7290 0.5147 35 1 5.8755 3.5064 0.5151 36 1 5.6599 3.4953 -1.9551 37 1 5.7557 1.7180 -1.9555 38 1 6.9700 3.5615 -4.0703 39 1 7.0951 1.7816 -4.0873 40 1 8.5137 3.4404 -5.8113 41 1 9.0819 1.8122 -5.3213 42 1 11.7216 2.3086 -4.3249 43 1 14.5547 2.1555 -6.0790 44 1 10.1534 1.8278 -2.7074 45 1 10.1372 3.4624 -1.9773 46 1 4.0206 0.3799 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019136224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:01 Heat of formation + Delta-G solvation = -59.881155 kcal Electronic energy + Delta-G solvation = -25398.173761 eV Core-core repulsion = 21673.231489 eV Total energy + Delta-G solvation = -3724.942273 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.25742 -40.90351 -38.93924 -38.43093 -35.92179 -34.74855 -33.31678 -31.62889 -31.09366 -30.53868 -29.17030 -28.09561 -26.17886 -25.07824 -23.83740 -23.41752 -21.80796 -21.57534 -20.11027 -19.27773 -18.79310 -17.96588 -17.53615 -17.18310 -16.91629 -16.64052 -16.45676 -16.41488 -15.81130 -15.42353 -15.06826 -14.65742 -14.63190 -14.43830 -14.11043 -14.03294 -13.92659 -13.51307 -13.30218 -13.11408 -13.01172 -12.92971 -12.76523 -12.62012 -12.42986 -12.35286 -12.15725 -12.00254 -11.88550 -11.75789 -11.67482 -11.58970 -10.93577 -10.92853 -9.76607 -9.66650 -9.13142 -9.04946 -7.94656 -5.25089 0.35129 0.51537 1.49457 1.52444 1.58354 1.61693 1.95452 2.39734 2.57707 2.81294 3.35092 3.48251 3.72647 3.85860 3.90034 3.98855 4.03409 4.09305 4.17800 4.27269 4.30936 4.33371 4.36136 4.40805 4.47386 4.52174 4.56099 4.62134 4.64415 4.74841 4.75596 4.86684 4.95859 5.02276 5.08487 5.17758 5.25800 5.25975 5.37238 5.43400 5.52344 5.54294 5.70123 5.85647 6.25714 6.48729 6.55822 7.13015 7.32357 8.04106 8.28138 9.28485 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.030050 B = 0.001930 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.570086 B =14503.492792 C =14638.759151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.113 3.887 4 C -0.215 4.215 5 C -0.079 4.079 6 C -0.159 4.159 7 C -0.044 4.044 8 C -0.060 4.060 9 C -0.115 4.115 10 C 0.521 3.479 11 O -0.590 6.590 12 N -0.615 5.615 13 C 0.107 3.893 14 C -0.145 4.145 15 C 0.165 3.835 16 H 0.061 0.939 17 N -0.730 5.730 18 C -0.241 4.241 19 H 0.082 0.918 20 C -0.076 4.076 21 N -0.970 5.970 22 Si 0.975 3.025 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.274 1.274 26 C 0.107 3.893 27 C -0.166 4.166 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.115 0.885 31 H 0.147 0.853 32 H 0.150 0.850 33 H 0.138 0.862 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.373 0.627 43 H 0.251 0.749 44 H 0.054 0.946 45 H 0.059 0.941 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.653 0.024 9.678 33.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.068 3.932 4 C -0.234 4.234 5 C -0.097 4.097 6 C -0.177 4.177 7 C -0.045 4.045 8 C -0.098 4.098 9 C -0.155 4.155 10 C 0.312 3.688 11 O -0.471 6.471 12 N -0.348 5.348 13 C -0.015 4.015 14 C -0.186 4.186 15 C 0.055 3.945 16 H 0.079 0.921 17 N -0.370 5.370 18 C -0.372 4.372 19 H 0.100 0.900 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.804 3.196 23 H -0.205 1.205 24 H -0.225 1.225 25 H -0.200 1.200 26 C -0.017 4.017 27 C -0.185 4.185 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.133 0.867 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.156 0.844 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.137 0.863 37 H 0.129 0.871 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.205 0.795 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -31.282 -0.023 10.158 32.890 hybrid contribution 1.108 -0.062 -0.518 1.224 sum -30.174 -0.085 9.640 31.677 Atomic orbital electron populations 1.23321 0.76490 1.05420 1.02281 1.86051 1.23473 1.27208 1.88781 1.19191 0.92400 0.84868 0.96730 1.21507 1.01066 0.92058 1.08731 1.21259 0.94497 0.97836 0.96063 1.21240 0.94254 0.98338 1.03868 1.19617 0.95001 0.92511 0.97326 1.20260 0.90057 1.03873 0.95621 1.21605 0.88151 1.06540 0.99182 1.21093 0.91327 0.74992 0.81391 1.90682 1.71705 1.52627 1.32102 1.48576 1.06968 1.72190 1.07081 1.22217 0.95987 1.03674 0.79597 1.23209 0.95309 1.01820 0.98265 1.21461 0.85723 0.97030 0.90301 0.92065 1.42414 1.18244 1.34949 1.41377 1.19575 1.00140 1.08179 1.09354 0.90038 1.25605 0.98399 0.99758 1.03027 1.69818 1.15858 1.29970 1.46376 0.85185 0.77133 0.77928 0.79338 1.20486 1.22525 1.20009 1.22199 0.81416 1.00129 0.97981 1.20432 0.91877 0.98480 1.07689 0.91686 0.91598 0.86699 0.83546 0.83244 0.84431 0.91340 0.90391 0.86300 0.87078 0.88579 0.89330 0.89627 0.92046 0.79451 0.94031 0.92734 0.92249 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -5.98 10.50 -92.46 -0.97 -6.95 16 3 C 0.11 2.04 6.69 22.50 0.15 2.19 16 4 C -0.22 -2.98 9.04 22.36 0.20 -2.77 16 5 C -0.08 -1.00 10.04 22.25 0.22 -0.78 16 6 C -0.16 -2.37 9.70 22.28 0.22 -2.16 16 7 C -0.04 -0.79 5.13 -19.88 -0.10 -0.89 16 8 C -0.06 -1.18 4.63 29.85 0.14 -1.04 16 9 C -0.12 -2.15 4.87 29.85 0.15 -2.00 16 10 C 0.52 14.91 7.85 87.66 0.69 15.59 16 11 O -0.59 -22.00 16.24 -3.02 -0.05 -22.05 16 12 N -0.61 -17.78 3.33 -811.76 -2.70 -20.47 16 13 C 0.11 2.40 6.49 86.73 0.56 2.97 16 14 C -0.15 -4.39 6.65 31.78 0.21 -4.18 16 15 C 0.16 6.27 3.69 46.39 0.17 6.44 16 16 H 0.06 2.35 8.13 -2.39 -0.02 2.33 16 17 N -0.73 -36.02 5.28 -316.34 -1.67 -37.69 16 18 C -0.24 -12.96 9.98 84.04 0.84 -12.12 16 19 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 20 C -0.08 -4.26 5.50 84.86 0.47 -3.80 16 21 N -0.97 -58.96 13.06 21.65 0.28 -58.67 16 22 Si 0.98 45.25 29.55 68.60 2.03 47.28 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 26 C 0.11 3.85 6.53 86.86 0.57 4.42 16 27 C -0.17 -3.19 9.64 22.36 0.22 -2.98 16 28 H 0.06 0.41 7.66 -2.39 -0.02 0.39 16 29 H 0.07 0.41 7.66 -2.38 -0.02 0.39 16 30 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.15 1.29 6.30 -2.91 -0.02 1.27 16 32 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 33 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 34 H 0.07 1.53 8.04 -2.39 -0.02 1.51 16 35 H 0.08 1.61 8.04 -2.39 -0.02 1.59 16 36 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 37 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.37 20.09 7.71 -92.70 -0.71 19.38 16 43 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 44 H 0.05 2.10 8.00 -2.39 -0.02 2.08 16 45 H 0.06 2.31 8.04 -2.39 -0.02 2.29 16 46 H 0.13 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -71.93 382.39 2.98 -68.95 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.25 Total: 29.46 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: 5.81 Total: 0.16 kcal Atomic # 7 Polarization: -112.75 SS G_CDS: -4.09 Total: -116.84 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -1.02 Total: -29.00 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -71.93 2.98 -68.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019136224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.066 kcal (2) G-P(sol) polarization free energy of solvation -71.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds