Wall clock time and date at job start Tue Mar 31 2020 12:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36944 * 120.00150 * 2 1 4 4 H 1.07995 * 119.99987 * 200.40933 * 3 2 1 5 5 C 1.38811 * 119.99522 * 20.40595 * 3 2 1 6 6 N 1.31613 * 120.00162 * 14.99054 * 5 3 2 7 7 Si 1.86801 * 119.99657 * 194.98575 * 5 3 2 8 8 H 1.48498 * 109.47174 * 85.00411 * 7 5 3 9 9 H 1.48492 * 109.47085 * 205.00585 * 7 5 3 10 10 H 1.48499 * 109.47043 * 325.00488 * 7 5 3 11 11 C 1.46506 * 120.00037 * 180.02562 * 2 1 3 12 12 H 1.08996 * 109.49527 * 180.02562 * 11 2 1 13 13 C 1.53037 * 109.52199 * 300.14174 * 11 2 1 14 14 C 1.53039 * 109.53669 * 181.32850 * 13 11 2 15 15 C 1.53627 * 109.24526 * 298.51529 * 14 13 11 16 16 N 1.46929 * 108.54150 * 54.85307 * 15 14 13 17 17 C 1.34777 * 120.62792 * 126.36893 * 16 15 14 18 18 O 1.21273 * 119.99747 * 179.72189 * 17 16 15 19 19 C 1.50698 * 120.00166 * 359.71974 * 17 16 15 20 20 H 1.09000 * 115.55086 * 34.33134 * 19 17 16 21 21 C 1.53076 * 117.51412 * 248.60877 * 19 17 16 22 22 C 1.53000 * 117.50046 * 179.97438 * 19 17 16 23 23 H 1.09002 * 117.49562 * 0.02562 * 22 19 17 24 24 C 1.50700 * 117.49881 * 215.00494 * 22 19 17 25 25 C 1.34515 * 125.78908 * 120.08792 * 24 22 19 26 26 C 1.41390 * 106.83902 * 179.77102 * 25 24 22 27 27 C 1.34512 * 106.83697 * 0.22500 * 26 25 24 28 28 O 1.34293 * 108.42717 * 359.97438 * 27 26 25 29 29 C 1.46920 * 118.73919 * 306.09754 * 16 15 14 30 30 H 1.09011 * 109.46665 * 275.12137 * 1 2 3 31 31 H 1.08995 * 109.47534 * 35.11871 * 1 2 3 32 32 H 1.08998 * 109.47546 * 155.12657 * 1 2 3 33 33 H 0.97006 * 119.99988 * 180.02562 * 6 5 3 34 34 H 1.08994 * 109.46495 * 301.35711 * 13 11 2 35 35 H 1.09003 * 109.45642 * 61.31604 * 13 11 2 36 36 H 1.09004 * 109.49486 * 58.59196 * 14 13 11 37 37 H 1.08995 * 109.49986 * 178.65002 * 14 13 11 38 38 H 1.08996 * 109.73452 * 295.11482 * 15 14 13 39 39 H 1.08999 * 109.66388 * 174.54884 * 15 14 13 40 40 H 1.08998 * 117.51550 * 145.04652 * 21 19 17 41 41 H 1.09001 * 117.49060 * 0.02562 * 21 19 17 42 42 H 1.07999 * 126.57993 * 0.03040 * 25 24 22 43 43 H 1.07995 * 126.57572 * 180.19189 * 26 25 24 44 44 H 1.08004 * 125.78217 * 180.02562 * 27 26 25 45 45 H 1.08998 * 109.59049 * 173.65077 * 29 16 15 46 46 H 1.09009 * 109.58519 * 294.07074 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1788 1.2153 -0.3262 5 6 1.5209 2.3503 0.4192 6 7 0.3883 2.2831 1.0861 7 14 2.2825 4.0126 0.0367 8 1 1.8674 4.4466 -1.3215 9 1 1.8230 5.0094 1.0368 10 1 3.7624 3.9033 0.0907 11 6 2.1975 -1.2688 -0.0006 12 1 3.2692 -1.0700 0.0000 13 6 1.8260 -2.0744 1.2464 14 6 2.6158 -3.3851 1.2631 15 6 2.2463 -4.2147 0.0240 16 7 2.4687 -3.3917 -1.1727 17 6 3.2415 -3.8412 -2.1812 18 8 3.4133 -3.1544 -3.1659 19 6 3.8921 -5.1971 -2.0854 20 1 3.3151 -5.9595 -1.5621 21 6 5.4157 -5.2420 -1.9436 22 6 4.7569 -5.6506 -3.2632 23 1 4.8555 -4.9680 -4.1073 24 6 4.7459 -7.1170 -3.6106 25 6 4.3661 -7.6435 -4.7887 26 6 4.5188 -9.0449 -4.6793 27 6 4.9779 -9.2911 -3.4392 28 8 5.1112 -8.1201 -2.7955 29 6 1.8278 -2.0720 -1.2515 30 1 -0.3633 0.0917 1.0237 31 1 -0.3634 0.8405 -0.5911 32 1 -0.3634 -0.9323 -0.4322 33 1 -0.0513 3.0969 1.3787 34 1 2.0653 -1.4947 2.1379 35 1 0.7584 -2.2939 1.2321 36 1 3.6836 -3.1665 1.2524 37 1 2.3686 -3.9474 2.1635 38 1 1.1977 -4.5075 0.0764 39 1 2.8744 -5.1043 -0.0224 40 1 5.8409 -6.0339 -1.3271 41 1 5.9470 -4.2905 -1.9193 42 1 4.0162 -7.0998 -5.6538 43 1 4.3068 -9.7770 -5.4444 44 1 5.2021 -10.2655 -3.0307 45 1 2.1796 -1.5474 -2.1398 46 1 0.7457 -2.1937 -1.3011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027588708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:13 Heat of formation + Delta-G solvation = 36.462324 kcal Electronic energy + Delta-G solvation = -26754.850253 eV Core-core repulsion = 23034.085747 eV Total energy + Delta-G solvation = -3720.764506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.83043 -40.21751 -37.92981 -36.37717 -35.09114 -33.23266 -32.30515 -31.30654 -29.82737 -28.84557 -26.05811 -25.79047 -24.06081 -23.43065 -22.90391 -21.91834 -21.62463 -20.38178 -19.40386 -18.50062 -17.99435 -17.04454 -16.71116 -16.25733 -15.79931 -15.24482 -15.12543 -14.68331 -14.23070 -14.04893 -13.73850 -13.63337 -13.32910 -13.05377 -12.86927 -12.77008 -12.66974 -12.49947 -12.30098 -12.12776 -11.93317 -11.25785 -11.04478 -10.90870 -10.84395 -10.75847 -10.63191 -10.41099 -10.31051 -10.13819 -10.12445 -9.86563 -9.81013 -9.57903 -8.62658 -8.57885 -8.33426 -6.77890 -5.71580 -3.15700 1.39755 2.30592 2.59765 2.67100 3.13236 3.40974 3.47161 3.48220 3.69264 4.18367 4.43611 4.49850 4.53855 4.67624 4.79959 4.84996 5.00079 5.04998 5.17184 5.30006 5.40314 5.45015 5.53097 5.55174 5.59785 5.63778 5.69802 5.78388 5.82380 5.86253 5.86793 6.00392 6.16459 6.22590 6.24191 6.38219 6.51270 6.65230 6.78435 6.89050 6.93528 6.99915 7.38914 7.60830 7.72163 7.82715 8.31367 8.40200 9.23936 9.87194 10.34558 11.33284 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026539 B = 0.002616 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.795784 B =10700.711318 C =11129.141030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.593 5.593 3 C -0.254 4.254 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.905 3.095 8 H -0.287 1.287 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.170 3.830 12 H 0.064 0.936 13 C -0.133 4.133 14 C -0.131 4.131 15 C 0.107 3.893 16 N -0.599 5.599 17 C 0.542 3.458 18 O -0.542 6.542 19 C -0.172 4.172 20 H 0.127 0.873 21 C -0.136 4.136 22 C -0.052 4.052 23 H 0.148 0.852 24 C 0.021 3.979 25 C -0.202 4.202 26 C -0.212 4.212 27 C -0.045 4.045 28 O -0.176 6.176 29 C 0.096 3.904 30 H 0.030 0.970 31 H 0.043 0.957 32 H -0.001 1.001 33 H 0.252 0.748 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.203 0.797 45 H 0.090 0.910 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.025 -23.379 -4.762 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.315 5.315 3 C -0.383 4.383 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.735 3.265 8 H -0.214 1.214 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.061 3.939 12 H 0.083 0.917 13 C -0.172 4.172 14 C -0.170 4.170 15 C -0.016 4.016 16 N -0.332 5.332 17 C 0.329 3.671 18 O -0.420 6.420 19 C -0.193 4.193 20 H 0.144 0.856 21 C -0.173 4.173 22 C -0.070 4.070 23 H 0.166 0.834 24 C -0.029 4.029 25 C -0.221 4.221 26 C -0.231 4.231 27 C -0.112 4.112 28 O -0.072 6.072 29 C -0.027 4.027 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.017 0.983 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.167 0.833 43 H 0.166 0.834 44 H 0.219 0.781 45 H 0.108 0.892 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.076 -22.772 -4.911 24.346 hybrid contribution 0.034 0.688 -0.221 0.723 sum 7.110 -22.084 -5.132 23.761 Atomic orbital electron populations 1.20795 0.82562 0.95437 0.99491 1.43915 1.01860 1.00051 1.85648 1.19236 0.96955 0.84883 1.37250 0.91309 1.24944 0.97892 0.98323 0.98527 1.70087 1.18896 1.26795 1.39465 0.86264 0.78649 0.83951 0.77639 1.21437 1.21804 1.20576 1.20562 0.96414 0.86210 0.90729 0.91729 1.22127 0.99437 0.94723 1.00953 1.21999 1.01103 0.97365 0.96536 1.21885 1.01257 0.93591 0.84883 1.48085 1.48499 1.18846 1.17725 1.19432 0.78619 0.86373 0.82679 1.90695 1.61891 1.58193 1.31233 1.22430 0.95350 0.97625 1.03940 0.85561 1.23103 0.91956 1.04172 0.98105 1.20520 1.04335 0.87546 0.94627 0.83428 1.21391 1.03162 0.88444 0.89907 1.21580 1.07199 0.94339 0.99025 1.21849 1.06721 0.96323 0.98256 1.24010 1.05623 0.88426 0.93159 1.83972 1.67327 1.14701 1.41208 1.22458 0.96869 0.81258 1.02120 0.95129 0.93860 0.98289 0.93779 0.91448 0.92465 0.91681 0.91319 0.91474 0.90142 0.87151 0.87069 0.83278 0.83424 0.78082 0.89160 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.93 8.03 59.85 0.48 4.41 16 2 N -0.59 -14.72 2.82 -173.35 -0.49 -15.21 16 3 C -0.25 -7.01 9.61 -15.06 -0.14 -7.15 16 4 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 5 C 0.00 0.04 5.06 -17.43 -0.09 -0.05 16 6 N -0.91 -26.38 10.67 55.49 0.59 -25.79 16 7 Si 0.90 22.13 29.58 -169.99 -5.03 17.10 16 8 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 C 0.17 3.45 2.74 -67.81 -0.19 3.26 16 12 H 0.06 1.39 7.85 -51.93 -0.41 0.98 16 13 C -0.13 -2.28 5.14 -26.69 -0.14 -2.42 16 14 C -0.13 -1.68 6.10 -26.39 -0.16 -1.84 16 15 C 0.11 1.26 6.33 -3.48 -0.02 1.23 16 16 N -0.60 -9.07 2.97 -172.51 -0.51 -9.58 16 17 C 0.54 8.30 7.48 -10.99 -0.08 8.22 16 18 O -0.54 -10.32 15.67 5.56 0.09 -10.23 16 19 C -0.17 -1.95 4.67 -91.73 -0.43 -2.38 16 20 H 0.13 1.24 6.81 -51.93 -0.35 0.88 16 21 C -0.14 -1.33 9.88 -26.67 -0.26 -1.60 16 22 C -0.05 -0.57 5.75 -91.75 -0.53 -1.09 16 23 H 0.15 1.71 7.67 -51.93 -0.40 1.32 16 24 C 0.02 0.22 6.80 -35.62 -0.24 -0.02 16 25 C -0.20 -2.05 10.81 -39.70 -0.43 -2.48 16 26 C -0.21 -1.81 10.91 -39.70 -0.43 -2.24 16 27 C -0.04 -0.35 12.09 29.42 0.36 0.00 16 28 O -0.18 -1.78 10.36 5.72 0.06 -1.72 16 29 C 0.10 1.78 5.78 -3.72 -0.02 1.76 16 30 H 0.03 0.80 7.40 -51.92 -0.38 0.41 16 31 H 0.04 1.14 7.22 -51.93 -0.37 0.77 16 32 H 0.00 -0.03 6.36 -51.93 -0.33 -0.36 16 33 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 0.74 5.67 -51.93 -0.29 0.45 16 40 H 0.11 0.92 7.97 -51.93 -0.41 0.50 16 41 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 43 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 44 H 0.20 0.80 8.06 -52.48 -0.42 0.37 16 45 H 0.09 1.89 7.01 -51.93 -0.36 1.53 16 46 H 0.06 1.17 6.50 -51.92 -0.34 0.83 16 LS Contribution 369.73 15.07 5.57 5.57 Total: -1.00 -32.35 369.73 -9.03 -41.38 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -6.99 Total: 0.87 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -2.33 Total: -2.39 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.41 Total: -50.58 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.15 Total: -11.95 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.35 -9.03 -41.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027588708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.844 kcal (2) G-P(sol) polarization free energy of solvation -32.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds