Wall clock time and date at job start Tue Mar 31 2020 12:02:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35712 * 117.00102 * 2 1
4 4 C 1.38994 * 119.91642 * 179.97438 * 3 2 1
5 5 C 1.37704 * 120.08885 * 179.97438 * 4 3 2
6 6 C 1.39726 * 119.91097 * 0.02562 * 5 4 3
7 7 C 1.47609 * 120.08430 * 179.97438 * 6 5 4
8 8 O 1.21575 * 120.00117 * 32.60819 * 7 6 5
9 9 N 1.34782 * 119.99825 * 212.60362 * 7 6 5
10 10 C 1.46928 * 120.62842 * 358.55167 * 9 7 6
11 11 C 1.53190 * 108.77360 * 126.41226 * 10 9 7
12 12 C 1.53047 * 109.31218 * 54.63267 * 11 10 9
13 13 C 1.53039 * 109.53931 * 298.63335 * 12 11 10
14 14 H 1.09000 * 109.49738 * 301.41772 * 13 12 11
15 15 N 1.46494 * 109.52442 * 181.33189 * 13 12 11
16 16 C 1.46502 * 120.00210 * 300.08606 * 15 13 12
17 17 C 1.36939 * 120.00144 * 120.08519 * 15 13 12
18 18 H 1.08003 * 119.99933 * 23.98044 * 17 15 13
19 19 C 1.38812 * 120.00108 * 203.98770 * 17 15 13
20 20 N 1.31621 * 119.99842 * 10.52823 * 19 17 15
21 21 Si 1.86800 * 120.00207 * 190.52531 * 19 17 15
22 22 H 1.48499 * 109.46947 * 59.99770 * 21 19 17
23 23 H 1.48491 * 109.47298 * 180.02562 * 21 19 17
24 24 H 1.48505 * 109.46999 * 300.00451 * 21 19 17
25 25 C 1.46920 * 120.63024 * 178.57241 * 9 7 6
26 26 C 1.39732 * 119.82605 * 0.26922 * 6 5 4
27 27 C 1.37701 * 119.91159 * 359.47295 * 26 6 5
28 28 H 1.08996 * 109.47379 * 60.00540 * 1 2 3
29 29 H 1.09005 * 109.47103 * 180.02562 * 1 2 3
30 30 H 1.09003 * 109.47100 * 299.99698 * 1 2 3
31 31 H 1.08000 * 119.95227 * 359.97438 * 4 3 2
32 32 H 1.08000 * 120.03859 * 179.97438 * 5 4 3
33 33 H 1.09001 * 109.58455 * 246.19483 * 10 9 7
34 34 H 1.08996 * 109.58896 * 6.62549 * 10 9 7
35 35 H 1.09002 * 109.49703 * 174.58419 * 11 10 9
36 36 H 1.09000 * 109.49916 * 294.64968 * 11 10 9
37 37 H 1.09001 * 109.45668 * 178.61153 * 12 11 10
38 38 H 1.08995 * 109.45571 * 58.65790 * 12 11 10
39 39 H 1.08999 * 109.47539 * 95.34587 * 16 15 13
40 40 H 1.08998 * 109.47270 * 215.34875 * 16 15 13
41 41 H 1.09003 * 109.47008 * 335.34343 * 16 15 13
42 42 H 0.97002 * 119.99921 * 179.97438 * 20 19 17
43 43 H 1.09001 * 109.58644 * 113.80307 * 25 9 7
44 44 H 1.08998 * 109.59126 * 353.37747 * 25 9 7
45 45 H 1.08006 * 120.04481 * 179.70199 * 26 6 5
46 46 H 1.08000 * 119.95931 * 180.25189 * 27 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0451 1.2092 0.0000
4 6 3.4332 1.2799 0.0005
5 6 4.0621 2.5049 0.0000
6 6 3.3028 3.6779 -0.0005
7 6 3.9730 4.9931 -0.0005
8 8 5.0394 5.1320 -0.5675
9 7 3.4025 6.0401 0.6280
10 6 2.0990 5.8958 1.2904
11 6 2.2275 6.3723 2.7406
12 6 2.7871 7.7967 2.7577
13 6 4.1785 7.8076 2.1206
14 1 4.8349 7.1316 2.6686
15 7 4.7270 9.1652 2.1658
16 6 4.0226 10.2625 1.4979
17 6 5.8982 9.4087 2.8323
18 1 6.6082 8.6095 2.9862
19 6 6.1729 10.6827 3.3104
20 7 5.2316 11.6027 3.3102
21 14 7.8783 11.0913 3.9539
22 1 8.8764 10.8908 2.8728
23 1 7.9119 12.5062 4.4032
24 1 8.2021 10.2013 5.0977
25 6 4.0721 7.3473 0.6634
26 6 1.9075 3.6026 0.0052
27 6 1.2862 2.3738 0.0003
28 1 -0.3634 0.5137 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 4.0193 0.3728 0.0014
32 1 5.1407 2.5589 0.0008
33 1 1.3563 6.5016 0.7712
34 1 1.7952 4.8492 1.2752
35 1 1.2464 6.3611 3.2155
36 1 2.9017 5.7095 3.2830
37 1 2.8563 8.1472 3.7875
38 1 2.1246 8.4538 2.1944
39 1 3.3894 10.7799 2.2187
40 1 4.7489 10.9621 1.0843
41 1 3.4054 9.8619 0.6937
42 1 5.4234 12.4928 3.6446
43 1 3.4903 8.0715 0.0930
44 1 5.0702 7.2584 0.2345
45 1 1.3172 4.5070 0.0096
46 1 0.2078 2.3147 0.0006
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001027663307.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:02:04
Heat of formation + Delta-G solvation = 4.558469 kcal
Electronic energy + Delta-G solvation = -27006.997873 eV
Core-core repulsion = 23284.849912 eV
Total energy + Delta-G solvation = -3722.147961 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.84310 -39.76303 -37.71624 -37.02274 -35.14343 -32.52773 -31.61591 -31.19166
-30.57905 -28.74134 -27.66286 -25.99165 -25.50287 -23.75902 -23.09036 -22.45323
-21.56198 -19.99405 -18.89319 -18.31905 -17.37783 -16.72757 -16.58165 -16.13985
-15.66172 -15.27398 -14.94598 -14.64968 -14.41845 -14.11806 -13.87602 -13.68169
-13.58472 -13.31351 -12.97728 -12.77701 -12.57645 -12.51049 -12.29314 -12.18022
-11.92505 -11.42572 -11.24290 -10.95520 -10.84482 -10.79927 -10.54362 -10.36133
-10.29063 -10.12307 -9.87426 -9.79205 -9.58783 -9.23392 -8.61368 -8.50380
-8.27363 -6.72109 -5.69751 -3.17962 0.80323 1.04588 2.84431 2.87305
3.16213 3.41773 3.46339 3.48643 3.64201 4.38488 4.51235 4.53145
4.56332 4.70017 4.74652 4.91832 5.02703 5.05240 5.11069 5.21720
5.30776 5.36463 5.46661 5.53937 5.57477 5.68128 5.75597 5.85945
5.88465 5.95923 6.01743 6.16860 6.18260 6.24788 6.37108 6.41150
6.54649 6.67749 6.80976 6.96153 6.99867 7.02287 7.40137 7.63665
7.75817 7.83555 8.35312 8.43825 9.26079 9.88108 10.37003 11.34456
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.026715 B = 0.002796 C = 0.002680
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1047.829358 B =10011.282659 C =10445.509881
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.316 6.316
3 C 0.145 3.855
4 C -0.159 4.159
5 C -0.024 4.024
6 C -0.161 4.161
7 C 0.557 3.443
8 O -0.541 6.541
9 N -0.597 5.597
10 C 0.077 3.923
11 C -0.132 4.132
12 C -0.132 4.132
13 C 0.170 3.830
14 H 0.064 0.936
15 N -0.592 5.592
16 C 0.162 3.838
17 C -0.255 4.255
18 H 0.067 0.933
19 C 0.003 3.997
20 N -0.909 5.909
21 Si 0.906 3.094
22 H -0.284 1.284
23 H -0.291 1.291
24 H -0.283 1.283
25 C 0.097 3.903
26 C -0.062 4.062
27 C -0.218 4.218
28 H 0.057 0.943
29 H 0.100 0.900
30 H 0.058 0.942
31 H 0.137 0.863
32 H 0.141 0.859
33 H 0.069 0.931
34 H 0.105 0.895
35 H 0.068 0.932
36 H 0.064 0.936
37 H 0.066 0.934
38 H 0.056 0.944
39 H 0.032 0.968
40 H 0.041 0.959
41 H -0.002 1.002
42 H 0.252 0.748
43 H 0.064 0.936
44 H 0.090 0.910
45 H 0.149 0.851
46 H 0.134 0.866
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.751 -20.449 -5.746 25.303
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.228 6.228
3 C 0.099 3.901
4 C -0.177 4.177
5 C -0.043 4.043
6 C -0.164 4.164
7 C 0.345 3.655
8 O -0.419 6.419
9 N -0.330 5.330
10 C -0.046 4.046
11 C -0.171 4.171
12 C -0.172 4.172
13 C 0.060 3.940
14 H 0.083 0.917
15 N -0.314 5.314
16 C 0.017 3.983
17 C -0.384 4.384
18 H 0.085 0.915
19 C -0.195 4.195
20 N -0.554 5.554
21 Si 0.736 3.264
22 H -0.210 1.210
23 H -0.217 1.217
24 H -0.210 1.210
25 C -0.027 4.027
26 C -0.080 4.080
27 C -0.236 4.236
28 H 0.076 0.924
29 H 0.119 0.881
30 H 0.076 0.924
31 H 0.154 0.846
32 H 0.158 0.842
33 H 0.087 0.913
34 H 0.122 0.878
35 H 0.086 0.914
36 H 0.083 0.917
37 H 0.085 0.915
38 H 0.075 0.925
39 H 0.050 0.950
40 H 0.060 0.940
41 H 0.016 0.984
42 H 0.063 0.937
43 H 0.082 0.918
44 H 0.109 0.891
45 H 0.167 0.833
46 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -13.075 -20.317 -5.987 24.891
hybrid contribution 0.458 0.584 0.496 0.893
sum -12.617 -19.733 -5.491 24.057
Atomic orbital electron populations
1.23108 0.78104 1.04126 1.01630 1.86040 1.21661 1.26998 1.88147
1.19281 0.92411 0.84166 0.94250 1.20386 0.91253 0.98667 1.07424
1.21045 1.00573 0.89916 0.92750 1.19901 0.93741 0.93952 1.08814
1.18191 0.84721 0.83611 0.78942 1.90782 1.22090 1.84214 1.44802
1.48057 1.20811 1.11079 1.53026 1.22680 0.85017 1.02921 0.93936
1.21947 1.01246 0.98608 0.95327 1.22126 0.98541 0.94265 1.02245
1.20576 0.93049 0.88400 0.91936 0.91725 1.43865 1.25257 1.01870
1.60432 1.20800 0.95172 0.89425 0.92855 1.19186 0.93980 0.95535
1.29715 0.91504 1.25042 0.97783 0.97406 0.99267 1.70047 1.31083
1.03908 1.50320 0.86313 0.84167 0.77086 0.78844 1.21005 1.21653
1.20956 1.22452 0.98505 0.81240 1.00462 1.21596 0.93728 0.98044
0.94668 1.21185 1.00245 0.91992 1.10201 0.92414 0.88131 0.92355
0.84558 0.84166 0.91285 0.87753 0.91354 0.91744 0.91490 0.92499
0.94971 0.94048 0.98376 0.93739 0.91773 0.89124 0.83340 0.84869
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.12 9.81 101.05 0.99 1.12 16
2 O -0.32 -2.80 10.48 -18.84 -0.20 -2.99 16
3 C 0.14 1.42 6.70 -39.02 -0.26 1.16 16
4 C -0.16 -1.63 9.97 -39.50 -0.39 -2.03 16
5 C -0.02 -0.29 9.59 -39.22 -0.38 -0.66 16
6 C -0.16 -2.08 5.53 -104.96 -0.58 -2.66 16
7 C 0.56 9.17 7.44 -12.43 -0.09 9.08 16
8 O -0.54 -10.95 16.18 5.30 0.09 -10.87 16
9 N -0.60 -9.37 2.97 -173.97 -0.52 -9.89 16
10 C 0.08 0.92 4.88 -3.71 -0.02 0.90 16
11 C -0.13 -1.74 6.08 -26.61 -0.16 -1.91 16
12 C -0.13 -2.31 5.15 -26.69 -0.14 -2.45 16
13 C 0.17 3.50 2.74 -67.81 -0.19 3.31 16
14 H 0.06 1.42 7.87 -51.93 -0.41 1.01 16
15 N -0.59 -14.84 2.81 -173.35 -0.49 -15.33 16
16 C 0.16 3.96 8.02 59.85 0.48 4.44 16
17 C -0.25 -7.08 9.58 -15.06 -0.14 -7.23 16
18 H 0.07 1.85 7.82 -52.48 -0.41 1.44 16
19 C 0.00 0.09 5.15 -17.43 -0.09 0.00 16
20 N -0.91 -26.48 10.63 55.49 0.59 -25.89 16
21 Si 0.91 22.21 29.57 -169.99 -5.03 17.18 16
22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
25 C 0.10 1.82 5.78 -3.71 -0.02 1.80 16
26 C -0.06 -0.63 7.43 -39.22 -0.29 -0.92 16
27 C -0.22 -1.90 9.01 -39.49 -0.36 -2.26 16
28 H 0.06 0.23 7.65 -51.93 -0.40 -0.16 16
29 H 0.10 0.31 8.14 -51.93 -0.42 -0.12 16
30 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16
31 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16
32 H 0.14 1.66 7.96 -52.49 -0.42 1.24 16
33 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16
34 H 0.11 1.03 3.55 -53.74 -0.19 0.84 16
35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16
37 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16
38 H 0.06 0.99 7.72 -51.93 -0.40 0.59 16
39 H 0.03 0.84 7.31 -51.93 -0.38 0.46 16
40 H 0.04 1.10 7.36 -51.93 -0.38 0.71 16
41 H 0.00 -0.05 6.36 -51.93 -0.33 -0.38 16
42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16
43 H 0.06 1.19 6.50 -51.93 -0.34 0.85 16
44 H 0.09 1.94 7.01 -51.93 -0.36 1.57 16
45 H 0.15 1.26 5.29 -52.48 -0.28 0.99 16
46 H 0.13 0.80 6.28 -52.49 -0.33 0.47 16
LS Contribution 360.24 15.07 5.43 5.43
Total: -1.00 -33.02 360.24 -8.46 -41.48
By element:
Atomic # 1 Polarization: 5.89 SS G_CDS: -6.69 Total: -0.80 kcal
Atomic # 6 Polarization: 3.32 SS G_CDS: -1.64 Total: 1.68 kcal
Atomic # 7 Polarization: -50.69 SS G_CDS: -0.41 Total: -51.11 kcal
Atomic # 8 Polarization: -13.75 SS G_CDS: -0.11 Total: -13.86 kcal
Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal
Total LS contribution 5.43 Total: 5.43 kcal
Total: -33.02 -8.46 -41.48 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001027663307.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.034 kcal
(2) G-P(sol) polarization free energy of solvation -33.017 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.016 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.475 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.558 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds