Wall clock time and date at job start Tue Mar 31 2020 12:02:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35712 * 117.00102 * 2 1
4 4 C 1.38994 * 119.91642 * 179.97438 * 3 2 1
5 5 C 1.37704 * 120.08885 * 179.97438 * 4 3 2
6 6 C 1.39726 * 119.91097 * 0.02562 * 5 4 3
7 7 C 1.47609 * 120.08430 * 179.97438 * 6 5 4
8 8 O 1.21575 * 120.00117 * 32.60819 * 7 6 5
9 9 N 1.34782 * 119.99825 * 212.60362 * 7 6 5
10 10 C 1.46928 * 120.62842 * 358.55167 * 9 7 6
11 11 C 1.53190 * 108.77360 * 126.41226 * 10 9 7
12 12 C 1.53047 * 109.31218 * 54.63267 * 11 10 9
13 13 C 1.53039 * 109.53931 * 298.63335 * 12 11 10
14 14 H 1.09000 * 109.49738 * 301.41772 * 13 12 11
15 15 N 1.46494 * 109.52442 * 181.33189 * 13 12 11
16 16 C 1.46502 * 120.00210 * 300.08606 * 15 13 12
17 17 C 1.36939 * 120.00144 * 120.08519 * 15 13 12
18 18 H 1.08003 * 119.99933 * 23.98044 * 17 15 13
19 19 C 1.38812 * 120.00108 * 203.98770 * 17 15 13
20 20 N 1.31621 * 119.99842 * 10.52823 * 19 17 15
21 21 Si 1.86800 * 120.00207 * 190.52531 * 19 17 15
22 22 H 1.48499 * 109.46947 * 59.99770 * 21 19 17
23 23 H 1.48491 * 109.47298 * 180.02562 * 21 19 17
24 24 H 1.48505 * 109.46999 * 300.00451 * 21 19 17
25 25 C 1.46920 * 120.63024 * 178.57241 * 9 7 6
26 26 C 1.39732 * 119.82605 * 0.26922 * 6 5 4
27 27 C 1.37701 * 119.91159 * 359.47295 * 26 6 5
28 28 H 1.08996 * 109.47379 * 60.00540 * 1 2 3
29 29 H 1.09005 * 109.47103 * 180.02562 * 1 2 3
30 30 H 1.09003 * 109.47100 * 299.99698 * 1 2 3
31 31 H 1.08000 * 119.95227 * 359.97438 * 4 3 2
32 32 H 1.08000 * 120.03859 * 179.97438 * 5 4 3
33 33 H 1.09001 * 109.58455 * 246.19483 * 10 9 7
34 34 H 1.08996 * 109.58896 * 6.62549 * 10 9 7
35 35 H 1.09002 * 109.49703 * 174.58419 * 11 10 9
36 36 H 1.09000 * 109.49916 * 294.64968 * 11 10 9
37 37 H 1.09001 * 109.45668 * 178.61153 * 12 11 10
38 38 H 1.08995 * 109.45571 * 58.65790 * 12 11 10
39 39 H 1.08999 * 109.47539 * 95.34587 * 16 15 13
40 40 H 1.08998 * 109.47270 * 215.34875 * 16 15 13
41 41 H 1.09003 * 109.47008 * 335.34343 * 16 15 13
42 42 H 0.97002 * 119.99921 * 179.97438 * 20 19 17
43 43 H 1.09001 * 109.58644 * 113.80307 * 25 9 7
44 44 H 1.08998 * 109.59126 * 353.37747 * 25 9 7
45 45 H 1.08006 * 120.04481 * 179.70199 * 26 6 5
46 46 H 1.08000 * 119.95931 * 180.25189 * 27 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0451 1.2092 0.0000
4 6 3.4332 1.2799 0.0005
5 6 4.0621 2.5049 0.0000
6 6 3.3028 3.6779 -0.0005
7 6 3.9730 4.9931 -0.0005
8 8 5.0394 5.1320 -0.5675
9 7 3.4025 6.0401 0.6280
10 6 2.0990 5.8958 1.2904
11 6 2.2275 6.3723 2.7406
12 6 2.7871 7.7967 2.7577
13 6 4.1785 7.8076 2.1206
14 1 4.8349 7.1316 2.6686
15 7 4.7270 9.1652 2.1658
16 6 4.0226 10.2625 1.4979
17 6 5.8982 9.4087 2.8323
18 1 6.6082 8.6095 2.9862
19 6 6.1729 10.6827 3.3104
20 7 5.2316 11.6027 3.3102
21 14 7.8783 11.0913 3.9539
22 1 8.8764 10.8908 2.8728
23 1 7.9119 12.5062 4.4032
24 1 8.2021 10.2013 5.0977
25 6 4.0721 7.3473 0.6634
26 6 1.9075 3.6026 0.0052
27 6 1.2862 2.3738 0.0003
28 1 -0.3634 0.5137 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8900
31 1 4.0193 0.3728 0.0014
32 1 5.1407 2.5589 0.0008
33 1 1.3563 6.5016 0.7712
34 1 1.7952 4.8492 1.2752
35 1 1.2464 6.3611 3.2155
36 1 2.9017 5.7095 3.2830
37 1 2.8563 8.1472 3.7875
38 1 2.1246 8.4538 2.1944
39 1 3.3894 10.7799 2.2187
40 1 4.7489 10.9621 1.0843
41 1 3.4054 9.8619 0.6937
42 1 5.4234 12.4928 3.6446
43 1 3.4903 8.0715 0.0930
44 1 5.0702 7.2584 0.2345
45 1 1.3172 4.5070 0.0096
46 1 0.2078 2.3147 0.0006
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001027663307.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:02:04
Heat of formation + Delta-G solvation = -15.965099 kcal
Electronic energy + Delta-G solvation = -27007.887842 eV
Core-core repulsion = 23284.849912 eV
Total energy + Delta-G solvation = -3723.037930 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.83673 -40.69980 -39.02202 -38.04192 -36.83287 -34.10838 -32.90052 -32.40618
-31.54385 -30.17481 -28.26353 -28.05332 -26.70749 -25.37556 -24.04893 -23.42402
-22.93889 -21.28218 -20.24519 -19.09975 -18.82174 -18.40266 -17.51884 -17.08243
-16.77826 -16.58448 -16.12979 -15.91415 -15.76309 -15.40346 -15.14068 -14.97216
-14.70596 -14.42563 -14.36242 -14.00941 -13.91795 -13.63301 -13.50544 -13.42174
-12.84828 -12.81892 -12.76237 -12.50265 -12.30715 -12.19631 -12.02691 -11.92314
-11.89177 -11.79077 -11.47295 -11.40153 -10.88363 -10.67182 -10.02717 -9.77053
-9.23571 -8.75530 -7.84484 -5.34931 -0.07121 0.28296 1.43186 1.45875
1.52398 1.70262 1.95824 2.31834 2.49141 2.73333 3.27707 3.47864
3.60685 3.71665 3.87282 3.98027 4.04543 4.12555 4.18929 4.20134
4.33153 4.35155 4.47177 4.47699 4.57085 4.59056 4.69925 4.76689
4.80812 4.83497 4.90464 4.94105 5.00985 5.08078 5.14365 5.20412
5.27522 5.33919 5.42476 5.48833 5.50416 5.61208 5.62837 5.72621
6.31409 6.37144 6.41759 7.09933 7.14030 7.84342 8.27103 9.17125
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.026715 B = 0.002796 C = 0.002680
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1047.829358 B =10011.282659 C =10445.509881
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.013 3.987
2 O -0.329 6.329
3 C 0.148 3.852
4 C -0.165 4.165
5 C -0.036 4.036
6 C -0.184 4.184
7 C 0.552 3.448
8 O -0.593 6.593
9 N -0.597 5.597
10 C 0.074 3.926
11 C -0.123 4.123
12 C -0.122 4.122
13 C 0.168 3.832
14 H 0.041 0.959
15 N -0.610 5.610
16 C 0.179 3.821
17 C -0.268 4.268
18 H 0.059 0.941
19 C -0.047 4.047
20 N -0.933 5.933
21 Si 0.967 3.033
22 H -0.282 1.282
23 H -0.289 1.289
24 H -0.276 1.276
25 C 0.113 3.887
26 C -0.056 4.056
27 C -0.206 4.206
28 H 0.070 0.930
29 H 0.118 0.882
30 H 0.072 0.928
31 H 0.148 0.852
32 H 0.127 0.873
33 H 0.096 0.904
34 H 0.135 0.865
35 H 0.107 0.893
36 H 0.056 0.944
37 H 0.041 0.959
38 H 0.062 0.938
39 H 0.011 0.989
40 H 0.011 0.989
41 H 0.031 0.969
42 H 0.250 0.750
43 H 0.070 0.930
44 H 0.055 0.945
45 H 0.171 0.829
46 H 0.170 0.830
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.934 -22.667 -5.776 28.878
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 O -0.242 6.242
3 C 0.102 3.898
4 C -0.183 4.183
5 C -0.055 4.055
6 C -0.187 4.187
7 C 0.343 3.657
8 O -0.475 6.475
9 N -0.328 5.328
10 C -0.046 4.046
11 C -0.162 4.162
12 C -0.161 4.161
13 C 0.061 3.939
14 H 0.059 0.941
15 N -0.333 5.333
16 C 0.035 3.965
17 C -0.399 4.399
18 H 0.077 0.923
19 C -0.242 4.242
20 N -0.579 5.579
21 Si 0.795 3.205
22 H -0.209 1.209
23 H -0.215 1.215
24 H -0.202 1.202
25 C -0.012 4.012
26 C -0.074 4.074
27 C -0.224 4.224
28 H 0.089 0.911
29 H 0.136 0.864
30 H 0.091 0.909
31 H 0.165 0.835
32 H 0.145 0.855
33 H 0.114 0.886
34 H 0.152 0.848
35 H 0.125 0.875
36 H 0.075 0.925
37 H 0.060 0.940
38 H 0.080 0.920
39 H 0.029 0.971
40 H 0.030 0.970
41 H 0.050 0.950
42 H 0.059 0.941
43 H 0.089 0.911
44 H 0.074 0.926
45 H 0.188 0.812
46 H 0.187 0.813
Dipole moment (debyes) X Y Z Total
from point charges -16.310 -22.585 -6.007 28.499
hybrid contribution 1.373 1.100 0.474 1.822
sum -14.937 -21.486 -5.533 26.746
Atomic orbital electron populations
1.23463 0.75850 1.05906 1.02894 1.86042 1.23993 1.26487 1.87648
1.19428 0.92295 0.85136 0.92976 1.20489 0.92220 0.98275 1.07323
1.21005 1.00201 0.90618 0.93703 1.19680 0.95165 0.91806 1.12041
1.18825 0.84139 0.84810 0.77878 1.90745 1.24556 1.85100 1.47096
1.48106 1.21951 1.09607 1.53149 1.23057 0.83404 1.05362 0.92814
1.21914 1.02713 0.94935 0.96625 1.21938 0.96401 0.97614 1.00193
1.20689 0.94404 0.85715 0.93138 0.94084 1.44063 1.25097 1.03590
1.60514 1.20520 0.94188 0.88878 0.92947 1.19422 0.95194 0.95618
1.29623 0.92289 1.25750 1.01185 0.97314 0.99999 1.70194 1.32578
1.03909 1.51264 0.85349 0.80073 0.76762 0.78292 1.20869 1.21457
1.20211 1.21956 0.97376 0.83284 0.98595 1.21758 0.92227 0.99613
0.93761 1.21516 1.01929 0.90723 1.08278 0.91136 0.86387 0.90942
0.83461 0.85517 0.88577 0.84814 0.87513 0.92502 0.93976 0.91967
0.97059 0.97024 0.95021 0.94121 0.91138 0.92639 0.81161 0.81273
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.07 9.81 113.37 1.11 1.18 16
2 O -0.33 -4.68 10.48 -90.33 -0.95 -5.63 16
3 C 0.15 2.43 6.70 22.63 0.15 2.58 16
4 C -0.16 -3.15 9.97 22.32 0.22 -2.93 16
5 C -0.04 -0.86 9.59 22.50 0.22 -0.65 16
6 C -0.18 -4.56 5.53 -20.08 -0.11 -4.67 16
7 C 0.55 18.37 7.44 86.72 0.65 19.02 16
8 O -0.59 -25.33 16.18 -3.95 -0.06 -25.40 16
9 N -0.60 -18.27 2.97 -822.59 -2.44 -20.71 16
10 C 0.07 1.51 4.88 86.36 0.42 1.93 16
11 C -0.12 -2.89 6.08 30.67 0.19 -2.70 16
12 C -0.12 -4.17 5.15 30.62 0.16 -4.01 16
13 C 0.17 7.11 2.74 45.07 0.12 7.23 16
14 H 0.04 1.89 7.87 -2.39 -0.02 1.87 16
15 N -0.61 -31.57 2.81 -702.35 -1.98 -33.54 16
16 C 0.18 8.97 8.02 127.77 1.03 9.99 16
17 C -0.27 -15.47 9.58 84.03 0.81 -14.67 16
18 H 0.06 3.41 7.82 -2.91 -0.02 3.38 16
19 C -0.05 -2.71 5.15 84.86 0.44 -2.27 16
20 N -0.93 -55.83 10.63 21.65 0.23 -55.60 16
21 Si 0.97 46.71 29.57 68.60 2.03 48.73 16
22 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16
23 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16
24 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16
25 C 0.11 4.31 5.78 86.36 0.50 4.81 16
26 C -0.06 -0.92 7.43 22.50 0.17 -0.75 16
27 C -0.21 -2.67 9.01 22.33 0.20 -2.47 16
28 H 0.07 0.23 7.65 -2.39 -0.02 0.21 16
29 H 0.12 0.24 8.14 -2.38 -0.02 0.22 16
30 H 0.07 0.22 7.65 -2.39 -0.02 0.20 16
31 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16
32 H 0.13 3.23 7.96 -2.91 -0.02 3.20 16
33 H 0.10 1.55 8.13 -2.39 -0.02 1.53 16
34 H 0.13 2.03 3.55 -4.09 -0.01 2.02 16
35 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16
36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16
37 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16
38 H 0.06 2.06 7.72 -2.39 -0.02 2.04 16
39 H 0.01 0.60 7.31 -2.39 -0.02 0.58 16
40 H 0.01 0.61 7.36 -2.39 -0.02 0.59 16
41 H 0.03 1.33 6.36 -2.39 -0.02 1.32 16
42 H 0.25 14.49 8.31 -92.71 -0.77 13.71 16
43 H 0.07 2.58 6.50 -2.39 -0.02 2.57 16
44 H 0.05 2.51 7.01 -2.39 -0.02 2.49 16
45 H 0.17 2.03 5.29 -2.91 -0.02 2.01 16
46 H 0.17 0.97 6.28 -2.91 -0.02 0.95 16
Total: -1.00 -76.54 360.24 4.07 -72.47
By element:
Atomic # 1 Polarization: 7.07 SS G_CDS: 0.98 Total: 8.05 kcal
Atomic # 6 Polarization: 5.36 SS G_CDS: 6.26 Total: 11.62 kcal
Atomic # 7 Polarization: -105.66 SS G_CDS: -4.19 Total: -109.85 kcal
Atomic # 8 Polarization: -30.01 SS G_CDS: -1.01 Total: -31.03 kcal
Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal
Total: -76.54 4.07 -72.47 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001027663307.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.505 kcal
(2) G-P(sol) polarization free energy of solvation -76.536 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.031 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.066 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.470 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.965 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds