Wall clock time and date at job start Tue Mar 31 2020 12:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35709 * 116.99817 * 2 1 4 4 C 1.39000 * 119.91207 * 179.97438 * 3 2 1 5 5 C 1.37699 * 120.08746 * 180.02562 * 4 3 2 6 6 C 1.39732 * 119.91251 * 0.02562 * 5 4 3 7 7 C 1.47609 * 120.08976 * 180.02562 * 6 5 4 8 8 O 1.21586 * 119.99485 * 324.96039 * 7 6 5 9 9 N 1.34772 * 120.00456 * 144.95882 * 7 6 5 10 10 C 1.46926 * 120.63005 * 354.23318 * 9 7 6 11 11 C 1.53185 * 108.77609 * 233.62911 * 10 9 7 12 12 C 1.53043 * 109.31489 * 305.36334 * 11 10 9 13 13 C 1.53041 * 109.53445 * 61.36404 * 12 11 10 14 14 H 1.09001 * 109.50020 * 58.58786 * 13 12 11 15 15 N 1.46501 * 109.49694 * 178.65227 * 13 12 11 16 16 C 1.46499 * 120.00110 * 60.00103 * 15 13 12 17 17 C 1.36934 * 119.99988 * 240.00133 * 15 13 12 18 18 H 1.08004 * 120.00064 * 23.78979 * 17 15 13 19 19 C 1.38816 * 120.00040 * 203.79066 * 17 15 13 20 20 N 1.31618 * 119.99841 * 11.06617 * 19 17 15 21 21 Si 1.86798 * 120.00246 * 191.06297 * 19 17 15 22 22 H 1.48503 * 109.46738 * 59.99964 * 21 19 17 23 23 H 1.48490 * 109.47335 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47344 * 300.00436 * 21 19 17 25 25 C 1.46923 * 120.63098 * 174.25481 * 9 7 6 26 26 C 1.39739 * 119.82513 * 0.26548 * 6 5 4 27 27 C 1.37701 * 119.90660 * 359.47639 * 26 6 5 28 28 H 1.08997 * 109.47125 * 299.99197 * 1 2 3 29 29 H 1.09001 * 109.47368 * 59.99500 * 1 2 3 30 30 H 1.09003 * 109.46857 * 179.97438 * 1 2 3 31 31 H 1.07989 * 119.95341 * 0.03385 * 4 3 2 32 32 H 1.08004 * 120.04293 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.58549 * 353.41990 * 10 9 7 34 34 H 1.08999 * 109.58966 * 113.69788 * 10 9 7 35 35 H 1.09001 * 109.50122 * 185.41176 * 11 10 9 36 36 H 1.09001 * 109.50155 * 65.31828 * 11 10 9 37 37 H 1.08997 * 109.46096 * 301.34601 * 12 11 10 38 38 H 1.09000 * 109.46171 * 181.38708 * 12 11 10 39 39 H 1.09000 * 109.47531 * 95.18028 * 16 15 13 40 40 H 1.08998 * 109.47001 * 215.18818 * 16 15 13 41 41 H 1.09003 * 109.46808 * 335.18429 * 16 15 13 42 42 H 0.96996 * 119.99941 * 180.02562 * 20 19 17 43 43 H 1.08999 * 109.58904 * 6.57907 * 25 9 7 44 44 H 1.09005 * 109.70298 * 246.22708 * 25 9 7 45 45 H 1.08000 * 120.04057 * 179.70594 * 26 6 5 46 46 H 1.08004 * 119.94998 * 180.25254 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4333 1.2799 0.0005 5 6 4.0622 2.5049 0.0011 6 6 3.3029 3.6779 0.0016 7 6 3.9729 4.9931 0.0016 8 8 5.0173 5.1433 0.6058 9 7 3.4272 6.0276 -0.6681 10 6 2.2355 5.8323 -1.5050 11 6 2.5268 6.3677 -2.9104 12 6 2.9939 7.8217 -2.8113 13 6 4.2842 7.8900 -1.9913 14 1 5.0488 7.2735 -2.4639 15 7 4.7480 9.2781 -1.9241 16 6 3.8942 10.3075 -1.3262 17 6 5.9795 9.6133 -2.4202 18 1 6.4423 8.9980 -3.1777 19 6 6.6332 10.7438 -1.9496 20 7 6.1810 11.3695 -0.8836 21 14 8.1546 11.3772 -2.8291 22 1 7.8083 11.7207 -4.2318 23 1 8.6609 12.5872 -2.1331 24 1 9.2041 10.3267 -2.8215 25 6 4.0128 7.3718 -0.5755 26 6 1.9075 3.6026 0.0072 27 6 1.2863 2.3737 0.0013 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0194 0.3728 0.0004 32 1 5.1408 2.5589 0.0011 33 1 1.9981 4.7698 -1.5606 34 1 1.3931 6.3727 -1.0732 35 1 1.6208 6.3170 -3.5142 36 1 3.3079 5.7655 -3.3745 37 1 2.2225 8.4186 -2.3249 38 1 3.1783 8.2129 -3.8119 39 1 4.1665 10.4425 -0.2794 40 1 4.0297 11.2476 -1.8610 41 1 2.8511 9.9984 -1.3932 42 1 6.6375 12.1597 -0.5549 43 1 4.9482 7.3253 -0.0177 44 1 3.3179 8.0413 -0.0683 45 1 1.3173 4.5070 0.0125 46 1 0.2078 2.3147 0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027663308.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:06 Heat of formation + Delta-G solvation = -28.689425 kcal Electronic energy + Delta-G solvation = -27010.184977 eV Core-core repulsion = 23286.595279 eV Total energy + Delta-G solvation = -3723.589698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.77659 -40.70452 -39.02712 -38.01333 -36.80912 -34.09885 -32.84042 -32.34711 -31.56263 -30.19672 -28.26656 -28.04848 -26.62187 -25.34211 -24.04261 -23.39699 -22.97425 -21.24760 -20.20014 -19.10027 -18.81603 -18.39341 -17.49499 -17.03090 -16.84000 -16.61733 -16.08066 -15.84091 -15.73851 -15.30313 -15.20202 -15.02635 -14.69273 -14.37389 -14.34219 -14.03694 -13.94762 -13.67525 -13.51271 -13.40302 -12.91500 -12.80606 -12.77765 -12.48891 -12.22867 -12.21838 -12.12559 -11.96207 -11.86527 -11.70586 -11.59129 -11.39751 -10.93171 -10.65807 -10.05758 -9.75312 -9.23676 -8.76099 -7.84677 -5.34984 -0.06528 0.28922 1.43383 1.45833 1.52478 1.69927 1.95615 2.31351 2.49218 2.72687 3.28181 3.49083 3.60690 3.72875 3.87115 3.98996 4.06076 4.11879 4.20592 4.22432 4.33762 4.36155 4.47351 4.47811 4.56588 4.59438 4.67750 4.76972 4.80661 4.87724 4.94292 4.96023 5.02038 5.08737 5.15134 5.20615 5.26588 5.34921 5.41413 5.49567 5.55158 5.60313 5.62849 5.72233 6.31430 6.36859 6.42618 7.10576 7.14051 7.84863 8.27454 9.17232 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027015 B = 0.002815 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.209142 B = 9945.836292 C =10383.705502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.328 6.328 3 C 0.149 3.851 4 C -0.164 4.164 5 C -0.037 4.037 6 C -0.183 4.183 7 C 0.550 3.450 8 O -0.596 6.596 9 N -0.598 5.598 10 C 0.090 3.910 11 C -0.123 4.123 12 C -0.122 4.122 13 C 0.167 3.833 14 H 0.039 0.961 15 N -0.609 5.609 16 C 0.179 3.821 17 C -0.267 4.267 18 H 0.064 0.936 19 C -0.052 4.052 20 N -0.936 5.936 21 Si 0.970 3.030 22 H -0.274 1.274 23 H -0.292 1.292 24 H -0.281 1.281 25 C 0.114 3.886 26 C -0.043 4.043 27 C -0.206 4.206 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.148 0.852 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.000 1.000 40 H 0.016 0.984 41 H 0.038 0.962 42 H 0.249 0.751 43 H 0.042 0.958 44 H 0.065 0.935 45 H 0.158 0.842 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.244 -22.235 -1.376 29.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.241 6.241 3 C 0.103 3.897 4 C -0.183 4.183 5 C -0.056 4.056 6 C -0.187 4.187 7 C 0.341 3.659 8 O -0.478 6.478 9 N -0.330 5.330 10 C -0.030 4.030 11 C -0.162 4.162 12 C -0.161 4.161 13 C 0.059 3.941 14 H 0.058 0.942 15 N -0.331 5.331 16 C 0.034 3.966 17 C -0.398 4.398 18 H 0.082 0.918 19 C -0.247 4.247 20 N -0.583 5.583 21 Si 0.798 3.202 22 H -0.199 1.199 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.011 4.011 26 C -0.062 4.062 27 C -0.224 4.224 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.137 0.863 31 H 0.166 0.834 32 H 0.143 0.857 33 H 0.135 0.865 34 H 0.113 0.887 35 H 0.130 0.870 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.019 0.981 40 H 0.035 0.965 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.083 0.917 45 H 0.175 0.825 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -18.588 -22.170 -1.004 28.949 hybrid contribution 1.489 1.128 0.022 1.868 sum -17.099 -21.042 -0.982 27.131 Atomic orbital electron populations 1.23464 0.75839 1.05916 1.02881 1.86045 1.24000 1.26431 1.87643 1.19401 0.92250 0.85112 0.92956 1.20475 0.92221 0.98208 1.07352 1.21003 1.00135 0.90668 0.93806 1.19672 0.95184 0.91672 1.12137 1.18932 0.83733 0.85011 0.78228 1.90763 1.25374 1.84724 1.46933 1.48188 1.30350 1.07786 1.46678 1.22591 0.86281 1.03941 0.90223 1.21907 1.02864 0.94658 0.96729 1.21925 0.96807 0.97492 0.99882 1.20774 0.95562 0.84800 0.92934 0.94231 1.44143 1.16145 1.02684 1.70165 1.20517 0.90158 0.90276 0.95654 1.19475 0.95569 1.09289 1.15428 0.91793 1.25844 1.01121 1.00440 0.97314 1.70216 1.42604 1.21426 1.24024 0.85306 0.79500 0.77267 0.78150 1.19950 1.21767 1.20689 1.22011 0.97567 0.81992 0.99494 1.21479 0.91875 0.99346 0.93461 1.21477 1.01879 0.90655 1.08404 0.91249 0.90867 0.86345 0.83417 0.85666 0.86500 0.88661 0.87014 0.92562 0.91321 0.92510 0.98131 0.96539 0.94327 0.94198 0.93919 0.91676 0.82462 0.81308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.33 -4.74 10.48 -90.30 -0.95 -5.69 16 3 C 0.15 2.50 6.70 22.63 0.15 2.65 16 4 C -0.16 -3.22 9.97 22.33 0.22 -3.00 16 5 C -0.04 -0.91 9.60 22.50 0.22 -0.70 16 6 C -0.18 -4.75 5.30 -20.08 -0.11 -4.86 16 7 C 0.55 19.38 7.38 86.72 0.64 20.02 16 8 O -0.60 -27.35 16.24 -3.99 -0.06 -27.41 16 9 N -0.60 -19.19 2.97 -822.59 -2.44 -21.64 16 10 C 0.09 1.86 4.77 86.36 0.41 2.27 16 11 C -0.12 -2.70 6.08 30.67 0.19 -2.51 16 12 C -0.12 -3.80 5.13 30.62 0.16 -3.64 16 13 C 0.17 7.05 2.74 45.07 0.12 7.18 16 14 H 0.04 1.83 7.87 -2.39 -0.02 1.81 16 15 N -0.61 -31.44 2.81 -702.34 -1.98 -33.41 16 16 C 0.18 8.90 7.90 127.77 1.01 9.91 16 17 C -0.27 -15.39 9.58 84.03 0.81 -14.59 16 18 H 0.06 3.63 7.82 -2.91 -0.02 3.60 16 19 C -0.05 -3.03 5.14 84.86 0.44 -2.59 16 20 N -0.94 -57.29 10.65 21.65 0.23 -57.06 16 21 Si 0.97 46.96 29.57 68.60 2.03 48.99 16 22 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 23 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 24 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 25 C 0.11 4.68 5.80 86.36 0.50 5.18 16 26 C -0.04 -0.76 7.34 22.51 0.17 -0.59 16 27 C -0.21 -2.78 9.01 22.32 0.20 -2.58 16 28 H 0.07 0.26 7.65 -2.39 -0.02 0.24 16 29 H 0.07 0.22 7.65 -2.39 -0.02 0.20 16 30 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.15 2.43 8.06 -2.92 -0.02 2.41 16 32 H 0.13 3.32 8.00 -2.91 -0.02 3.30 16 33 H 0.12 1.87 4.45 -2.38 -0.01 1.86 16 34 H 0.10 1.52 8.04 -2.39 -0.02 1.50 16 35 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 2.02 6.72 -2.39 -0.02 2.01 16 38 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.00 0.02 7.32 -2.39 -0.02 0.00 16 40 H 0.02 0.87 7.35 -2.39 -0.02 0.85 16 41 H 0.04 1.58 6.46 -2.39 -0.02 1.56 16 42 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.04 2.16 7.00 -2.39 -0.02 2.14 16 44 H 0.07 2.59 7.51 -2.38 -0.02 2.58 16 45 H 0.16 2.09 6.03 -2.91 -0.02 2.08 16 46 H 0.17 1.06 6.28 -2.91 -0.02 1.04 16 Total: -1.00 -78.69 361.37 4.04 -74.65 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 0.98 Total: 8.25 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: 6.23 Total: 13.33 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -4.19 Total: -112.12 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -1.01 Total: -33.10 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -78.69 4.04 -74.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027663308.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.960 kcal (2) G-P(sol) polarization free energy of solvation -78.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds