Wall clock time and date at job start Tue Mar 31 2020 12:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42893 * 114.00036 * 2 1 4 4 C 1.50698 * 109.47190 * 180.02562 * 3 2 1 5 5 C 1.37989 * 120.07495 * 0.27929 * 4 3 2 6 6 C 1.38332 * 120.14718 * 180.25233 * 5 4 3 7 7 C 1.38378 * 120.29390 * 359.74630 * 6 5 4 8 8 C 1.37941 * 120.14376 * 359.97213 * 7 6 5 9 9 C 1.39559 * 120.07877 * 180.02562 * 4 3 2 10 10 C 1.47842 * 120.14232 * 0.02562 * 9 4 3 11 11 O 1.21558 * 119.99609 * 22.10522 * 10 9 4 12 12 N 1.34773 * 120.00305 * 202.10424 * 10 9 4 13 13 C 1.46495 * 119.99989 * 5.30963 * 12 10 9 14 14 C 1.46501 * 120.00195 * 185.30649 * 12 10 9 15 15 H 1.09004 * 110.77828 * 356.75876 * 14 12 10 16 16 C 1.55156 * 110.72054 * 120.00106 * 14 12 10 17 17 C 1.54906 * 101.61565 * 153.84654 * 16 14 12 18 18 N 1.47467 * 104.81462 * 323.04533 * 17 16 14 19 19 C 1.36937 * 125.63119 * 204.05288 * 18 17 16 20 20 H 1.07991 * 119.99958 * 180.02562 * 19 18 17 21 21 C 1.38820 * 119.99920 * 0.02562 * 19 18 17 22 22 N 1.31621 * 119.99679 * 0.02562 * 21 19 18 23 23 Si 1.86792 * 119.99914 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47137 * 90.00117 * 23 21 19 25 25 H 1.48497 * 109.47223 * 209.99942 * 23 21 19 26 26 H 1.48496 * 109.47239 * 330.00099 * 23 21 19 27 27 C 1.47023 * 108.72097 * 24.06567 * 18 17 16 28 28 H 1.08994 * 109.46858 * 59.99910 * 1 2 3 29 29 H 1.08994 * 109.47232 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46648 * 299.99791 * 1 2 3 31 31 H 1.08997 * 109.47453 * 60.00519 * 3 2 1 32 32 H 1.09005 * 109.47296 * 299.99958 * 3 2 1 33 33 H 1.08002 * 119.92618 * 359.97438 * 5 4 3 34 34 H 1.07998 * 119.85281 * 179.71943 * 6 5 4 35 35 H 1.08001 * 119.92990 * 180.02562 * 7 6 5 36 36 H 1.08003 * 120.06951 * 180.02562 * 8 7 6 37 37 H 1.08999 * 109.47251 * 264.04223 * 13 12 10 38 38 H 1.09003 * 109.46991 * 24.04027 * 13 12 10 39 39 H 1.09002 * 109.47560 * 144.03533 * 13 12 10 40 40 H 1.09005 * 111.00583 * 271.94060 * 16 14 12 41 41 H 1.08998 * 111.00255 * 35.75608 * 16 14 12 42 42 H 1.09006 * 110.36820 * 81.85039 * 17 16 14 43 43 H 1.08997 * 110.36781 * 204.17035 * 17 16 14 44 44 H 0.97003 * 119.99765 * 180.02562 * 22 21 19 45 45 H 1.08996 * 109.88587 * 239.55814 * 27 18 17 46 46 H 1.09006 * 109.87696 * 118.39444 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 6 4.1076 -0.0586 -0.0069 6 6 5.4865 -0.1696 -0.0022 7 6 6.2781 0.9654 0.0035 8 6 5.6960 2.2160 0.0040 9 6 4.3052 2.3351 -0.0002 10 6 3.6745 3.6722 0.0014 11 8 2.5334 3.8055 0.3986 12 7 4.3647 4.7434 -0.4373 13 6 5.6956 4.5673 -1.0236 14 6 3.7841 6.0840 -0.3280 15 1 2.7724 6.0355 0.0750 16 6 4.6800 7.0007 0.5462 17 6 4.3226 8.4036 -0.0050 18 7 4.1404 8.2039 -1.4547 19 6 4.2728 9.1702 -2.4159 20 1 4.1176 8.9224 -3.4555 21 6 4.6065 10.4681 -2.0540 22 7 4.7962 10.7698 -0.7870 23 14 4.7864 11.7863 -3.3651 24 1 3.4756 12.4491 -3.5839 25 1 5.7825 12.7940 -2.9206 26 1 5.2441 11.1639 -4.6333 27 6 3.7927 6.7961 -1.6971 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.6888 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.4955 -0.9483 -0.0110 34 1 5.9472 -1.1463 -0.0026 35 1 7.3540 0.8719 0.0067 36 1 6.3150 3.1010 0.0080 37 1 6.4545 4.7360 -0.2596 38 1 5.7903 3.5532 -1.4119 39 1 5.8324 5.2814 -1.8357 40 1 4.4151 6.9159 1.6001 41 1 5.7357 6.7776 0.3916 42 1 3.3987 8.7647 0.4469 43 1 5.1366 9.1037 0.1828 44 1 5.0290 11.6769 -0.5340 45 1 4.5364 6.3375 -2.3488 46 1 2.8055 6.7316 -2.1548 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033225219.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:11 Heat of formation + Delta-G solvation = 7.249561 kcal Electronic energy + Delta-G solvation = -27033.350156 eV Core-core repulsion = 23311.318889 eV Total energy + Delta-G solvation = -3722.031267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.74380 -38.82870 -37.65538 -37.25013 -35.06411 -32.48087 -32.11860 -31.10288 -29.20968 -27.66727 -27.53041 -26.83167 -25.51999 -24.61491 -23.36729 -21.80483 -20.45101 -20.24334 -19.07274 -17.37547 -17.03646 -16.74316 -16.53634 -16.02427 -15.99261 -15.21300 -14.93389 -14.74707 -14.52246 -14.45099 -13.97778 -13.74532 -13.40861 -13.02878 -13.01063 -12.78204 -12.48313 -12.32131 -12.13713 -11.86123 -11.60292 -11.55733 -11.45255 -11.09201 -10.97053 -10.83849 -10.80552 -10.45962 -10.13635 -9.99937 -9.83981 -9.62421 -9.54892 -9.04616 -8.85623 -8.69183 -8.37018 -6.88069 -5.68816 -3.11317 0.74854 1.17470 2.83687 3.07791 3.38148 3.43217 3.44964 3.52489 3.66729 4.44333 4.47440 4.63117 4.74422 4.83137 5.11501 5.14793 5.18474 5.23431 5.32744 5.36321 5.38349 5.42779 5.48318 5.51350 5.52773 5.55673 5.65311 5.68122 5.76417 5.84883 5.88416 6.10936 6.21347 6.23711 6.27236 6.33370 6.50409 6.53925 6.68058 6.70503 6.94961 7.01445 7.45692 7.53554 7.59100 7.80826 8.22555 8.31633 9.17698 9.78270 10.42317 11.34873 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021199 B = 0.002913 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.499072 B = 9609.535007 C =10289.083922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.397 6.397 3 C 0.101 3.899 4 C -0.031 4.031 5 C -0.111 4.111 6 C -0.098 4.098 7 C -0.133 4.133 8 C -0.104 4.104 9 C -0.129 4.129 10 C 0.555 3.445 11 O -0.542 6.542 12 N -0.591 5.591 13 C 0.056 3.944 14 C 0.126 3.874 15 H 0.105 0.895 16 C -0.151 4.151 17 C 0.154 3.846 18 N -0.602 5.602 19 C -0.223 4.223 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.916 3.084 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.128 3.872 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.137 0.863 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.153 0.847 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.015 0.985 43 H 0.110 0.890 44 H 0.253 0.747 45 H 0.030 0.970 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 -22.235 2.617 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.317 6.317 3 C 0.026 3.974 4 C -0.032 4.032 5 C -0.129 4.129 6 C -0.117 4.117 7 C -0.151 4.151 8 C -0.122 4.122 9 C -0.132 4.132 10 C 0.344 3.656 11 O -0.421 6.421 12 N -0.322 5.322 13 C -0.086 4.086 14 C 0.023 3.977 15 H 0.123 0.877 16 C -0.191 4.191 17 C 0.029 3.971 18 N -0.329 5.329 19 C -0.352 4.352 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.570 5.570 23 Si 0.746 3.254 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.207 1.207 27 C 0.002 3.998 28 H 0.060 0.940 29 H 0.103 0.897 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.155 0.845 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.170 0.830 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.033 0.967 43 H 0.127 0.873 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.683 -22.066 2.788 22.252 hybrid contribution -0.063 0.940 -0.696 1.171 sum 0.620 -21.125 2.092 21.238 Atomic orbital electron populations 1.22704 0.80619 1.02477 1.00397 1.87744 1.19976 1.28258 1.95681 1.21432 0.89280 0.83903 1.02811 1.19727 0.94458 0.92442 0.96569 1.20976 0.94566 0.97358 1.00007 1.21379 0.93758 0.98814 0.97701 1.21161 1.00171 0.92239 1.01547 1.22202 0.93814 0.99339 0.96822 1.19703 0.93956 0.92662 1.06879 1.18335 0.85461 0.83955 0.77833 1.90722 1.17470 1.85611 1.48344 1.47706 1.17928 1.06882 1.59662 1.22499 0.83639 1.03350 0.99108 1.22282 0.98524 0.79215 0.97685 0.87750 1.23376 0.98916 0.98651 0.98150 1.21950 1.01113 0.91498 0.82579 1.44445 1.81678 1.03426 1.03315 1.19067 1.40080 0.88131 0.87876 0.90458 1.24795 1.02024 0.97270 0.96484 1.69786 1.54345 1.18736 1.14155 0.86057 0.77488 0.81486 0.80361 1.21595 1.21626 1.20688 1.21532 0.97780 0.86894 0.93636 0.93954 0.89696 0.93850 0.89599 0.91495 0.84533 0.85676 0.85424 0.83012 0.91916 0.89628 0.89930 0.92061 0.91770 0.96711 0.87251 0.93659 0.95224 0.95672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.40 -4.74 9.19 -35.23 -0.32 -5.06 16 3 C 0.10 1.34 4.64 36.00 0.17 1.50 16 4 C -0.03 -0.40 5.91 -104.22 -0.62 -1.02 16 5 C -0.11 -1.21 9.37 -39.64 -0.37 -1.58 16 6 C -0.10 -0.89 10.04 -39.50 -0.40 -1.28 16 7 C -0.13 -1.19 10.03 -39.64 -0.40 -1.59 16 8 C -0.10 -1.10 7.56 -39.19 -0.30 -1.40 16 9 C -0.13 -1.71 5.55 -104.97 -0.58 -2.29 16 10 C 0.55 8.82 7.39 -12.33 -0.09 8.73 16 11 O -0.54 -9.99 13.34 5.31 0.07 -9.91 16 12 N -0.59 -9.18 2.89 -172.95 -0.50 -9.68 16 13 C 0.06 0.69 7.68 59.84 0.46 1.15 16 14 C 0.13 2.34 3.36 -66.10 -0.22 2.11 16 15 H 0.10 2.08 7.01 -51.93 -0.36 1.72 16 16 C -0.15 -2.88 6.65 -24.58 -0.16 -3.04 16 17 C 0.15 3.70 5.89 -2.51 -0.01 3.69 16 18 N -0.60 -15.28 3.40 -170.04 -0.58 -15.86 16 19 C -0.22 -6.16 10.27 -15.06 -0.15 -6.31 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 21 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 22 N -0.92 -26.54 10.09 55.49 0.56 -25.98 16 23 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 C 0.13 2.71 6.84 -3.06 -0.02 2.69 16 28 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 1.24 6.92 -51.93 -0.36 0.88 16 32 H 0.07 0.93 7.95 -51.93 -0.41 0.51 16 33 H 0.14 1.39 7.00 -52.49 -0.37 1.02 16 34 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 36 H 0.15 1.41 4.22 -52.48 -0.22 1.19 16 37 H 0.06 0.67 6.90 -51.93 -0.36 0.31 16 38 H 0.09 0.88 4.99 -51.93 -0.26 0.62 16 39 H 0.08 1.11 6.05 -51.93 -0.31 0.80 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.16 7.14 -51.93 -0.37 0.79 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.11 2.93 5.88 -51.93 -0.31 2.63 16 44 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.03 0.60 5.88 -51.93 -0.31 0.30 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 358.49 15.07 5.40 5.40 Total: -1.00 -31.73 358.49 -8.64 -40.37 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -6.57 Total: 1.50 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -1.68 Total: 2.40 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.52 Total: -51.52 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.25 Total: -14.98 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.73 -8.64 -40.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033225219.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.624 kcal (2) G-P(sol) polarization free energy of solvation -31.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds