Wall clock time and date at job start Tue Mar 31 2020 12:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99561 * 2 1 4 4 C 1.50702 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.38387 * 119.92850 * 89.99755 * 4 3 2 6 6 C 1.38336 * 120.29474 * 180.02562 * 5 4 3 7 7 C 1.37972 * 120.14371 * 0.02562 * 6 5 4 8 8 C 1.39562 * 119.85264 * 359.97438 * 7 6 5 9 9 C 1.47851 * 120.14050 * 179.97438 * 8 7 6 10 10 O 1.21559 * 119.99296 * 221.66399 * 9 8 7 11 11 N 1.34769 * 120.00205 * 41.66458 * 9 8 7 12 12 C 1.46498 * 120.00240 * 356.03481 * 11 9 8 13 13 C 1.46502 * 119.99872 * 176.03765 * 11 9 8 14 14 H 1.09000 * 110.64148 * 1.68243 * 13 11 9 15 15 C 1.55156 * 110.87587 * 124.93407 * 13 11 9 16 16 C 1.55131 * 101.48786 * 82.76423 * 15 13 11 17 17 N 1.47426 * 104.71798 * 37.29600 * 16 15 13 18 18 C 1.36942 * 125.64688 * 155.81946 * 17 16 15 19 19 H 1.07998 * 119.99787 * 189.71487 * 18 17 16 20 20 C 1.38811 * 119.99674 * 9.70898 * 18 17 16 21 21 N 1.31625 * 119.99741 * 205.46473 * 20 18 17 22 22 Si 1.86797 * 120.00173 * 25.46530 * 20 18 17 23 23 H 1.48507 * 109.46872 * 269.99613 * 22 20 18 24 24 H 1.48495 * 109.47041 * 29.99517 * 22 20 18 25 25 H 1.48502 * 109.47145 * 150.00021 * 22 20 18 26 26 C 1.47024 * 108.70677 * 335.55235 * 17 16 15 27 27 C 1.37936 * 119.92690 * 270.25726 * 4 3 2 28 28 H 1.08993 * 109.47447 * 60.00325 * 1 2 3 29 29 H 1.09000 * 109.46385 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47157 * 300.00062 * 1 2 3 31 31 H 1.08998 * 109.47901 * 60.00062 * 3 2 1 32 32 H 1.08999 * 109.47257 * 299.99603 * 3 2 1 33 33 H 1.08001 * 119.85075 * 0.02562 * 5 4 3 34 34 H 1.07999 * 119.92449 * 180.02562 * 6 5 4 35 35 H 1.08005 * 120.07589 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.46993 * 269.86246 * 12 11 9 37 37 H 1.09002 * 109.47152 * 29.86471 * 12 11 9 38 38 H 1.09001 * 109.47516 * 149.86842 * 12 11 9 39 39 H 1.08995 * 111.00798 * 201.00560 * 15 13 11 40 40 H 1.09003 * 111.00287 * 324.82085 * 15 13 11 41 41 H 1.09002 * 110.49741 * 278.46022 * 16 15 13 42 42 H 1.08997 * 110.34583 * 156.05508 * 16 15 13 43 43 H 0.97001 * 119.99981 * 354.95389 * 21 20 18 44 44 H 1.09002 * 109.87706 * 120.70191 * 26 17 16 45 45 H 1.08992 * 109.88199 * 241.86732 * 26 17 16 46 46 H 1.07994 * 120.07890 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2013 1.1319 -1.1984 6 6 5.5802 1.0222 -1.2067 7 6 6.2780 0.9662 -0.0177 8 6 5.5895 1.0209 1.1951 9 6 6.3307 0.9608 2.4729 10 8 5.9017 0.2926 3.3934 11 7 7.4818 1.6466 2.6172 12 6 8.0440 2.3814 1.4813 13 6 8.1710 1.6573 3.9099 14 1 7.6386 1.0410 4.6343 15 6 9.6396 1.1805 3.7575 16 6 10.3413 2.4843 3.2946 17 7 9.6731 3.5584 4.0517 18 6 10.2128 4.7820 4.3463 19 1 9.7095 5.4420 5.0372 20 6 11.4069 5.1738 3.7568 21 7 12.1795 6.0542 4.3573 22 14 11.9175 4.4516 2.1115 23 1 12.7203 3.2229 2.3380 24 1 10.7061 4.1130 1.3223 25 1 12.7322 5.4448 1.3664 26 6 8.3288 3.1008 4.4326 27 6 4.1976 1.1272 1.1964 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.6598 1.1750 -2.1319 34 1 6.1118 0.9804 -2.1459 35 1 7.3546 0.8802 -0.0254 36 1 8.7173 1.7297 0.9244 37 1 7.2370 2.7136 0.8282 38 1 8.5961 3.2475 1.8462 39 1 10.0392 0.8351 4.7109 40 1 9.7211 0.4033 2.9975 41 1 10.2031 2.6326 2.2236 42 1 11.4028 2.4510 3.5401 43 1 11.8812 6.4838 5.1743 44 1 8.2258 3.1155 5.5176 45 1 7.5756 3.7441 3.9779 46 1 3.6586 1.1653 2.1314 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033241507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:15 Heat of formation + Delta-G solvation = -5.128918 kcal Electronic energy + Delta-G solvation = -26972.073322 eV Core-core repulsion = 23249.505284 eV Total energy + Delta-G solvation = -3722.568038 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.62650 -39.20748 -37.94849 -37.40441 -34.71082 -32.75447 -32.00951 -31.28076 -29.53788 -28.63874 -27.57571 -26.58363 -25.59575 -24.43167 -23.31264 -21.95690 -21.16413 -20.33766 -18.95429 -17.51048 -17.32333 -16.85799 -16.67871 -16.36938 -16.17551 -15.49303 -15.39440 -15.00983 -14.62137 -14.50084 -14.07914 -13.57233 -13.46646 -13.22628 -12.94949 -12.84200 -12.70424 -12.60372 -12.16607 -12.00061 -11.86056 -11.79195 -11.70233 -11.31200 -11.21060 -11.08333 -10.97354 -10.78626 -10.08212 -10.04335 -9.74693 -9.60597 -9.28579 -9.15746 -9.03367 -8.53093 -8.47354 -7.10934 -6.35702 -3.21286 0.76913 1.06363 2.68644 3.04837 3.35907 3.36925 3.43078 3.61001 3.82569 4.38752 4.49954 4.55664 4.58449 4.79653 4.86193 4.93008 4.96768 5.00536 5.02173 5.09963 5.12979 5.25754 5.31009 5.31787 5.33993 5.46077 5.53173 5.62592 5.63117 5.74364 5.89195 5.93157 6.03535 6.11939 6.13351 6.24098 6.24587 6.31618 6.51622 6.52907 6.61991 6.71070 6.75912 6.85417 7.49295 7.67316 8.20719 8.31508 9.01617 9.56269 10.22747 11.13444 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.003031 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.218290 B = 9234.797307 C = 9639.817678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.104 3.896 4 C -0.102 4.102 5 C -0.079 4.079 6 C -0.129 4.129 7 C -0.083 4.083 8 C -0.125 4.125 9 C 0.558 3.442 10 O -0.541 6.541 11 N -0.589 5.589 12 C 0.059 3.941 13 C 0.125 3.875 14 H 0.107 0.893 15 C -0.139 4.139 16 C 0.095 3.905 17 N -0.607 5.607 18 C -0.328 4.328 19 H 0.076 0.924 20 C -0.022 4.022 21 N -0.921 5.921 22 Si 1.065 2.935 23 H -0.294 1.294 24 H -0.287 1.287 25 H -0.300 1.300 26 C 0.127 3.873 27 C -0.045 4.045 28 H 0.041 0.959 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.061 0.939 43 H 0.263 0.737 44 H 0.040 0.960 45 H 0.032 0.968 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.691 -11.173 -12.958 25.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.028 3.972 4 C -0.102 4.102 5 C -0.097 4.097 6 C -0.147 4.147 7 C -0.101 4.101 8 C -0.128 4.128 9 C 0.346 3.654 10 O -0.419 6.419 11 N -0.320 5.320 12 C -0.084 4.084 13 C 0.022 3.978 14 H 0.125 0.875 15 C -0.178 4.178 16 C -0.030 4.030 17 N -0.335 5.335 18 C -0.455 4.455 19 H 0.094 0.906 20 C -0.222 4.222 21 N -0.562 5.562 22 Si 0.898 3.102 23 H -0.222 1.222 24 H -0.214 1.214 25 H -0.228 1.228 26 C 0.001 3.999 27 C -0.064 4.064 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.050 0.950 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.545 -11.579 -13.533 25.001 hybrid contribution -1.388 0.371 1.030 1.768 sum -18.934 -11.209 -12.502 25.307 Atomic orbital electron populations 1.22769 0.80894 1.02938 1.00037 1.87992 1.19672 1.27322 1.95410 1.21329 0.89542 0.85211 1.01154 1.19473 0.94191 1.03316 0.93247 1.21196 0.94368 0.96753 0.97425 1.21095 0.94090 1.01360 0.98126 1.21654 1.00718 0.96272 0.91464 1.19894 0.94161 1.05282 0.93435 1.18355 0.80503 0.79335 0.87216 1.90762 1.68127 1.41239 1.41783 1.47718 1.22861 1.49129 1.12338 1.22425 0.99226 0.97982 0.88724 1.22174 0.93110 0.98301 0.84226 0.87480 1.23109 0.94585 0.97962 1.02133 1.22294 0.97572 0.87447 0.95677 1.44841 1.10860 1.13054 1.64738 1.20022 1.07937 0.93103 1.24431 0.90645 1.25827 0.92752 0.99801 1.03810 1.70898 1.33390 1.31461 1.20404 0.83859 0.75003 0.74619 0.76745 1.22231 1.21385 1.22764 1.21663 0.88787 0.91633 0.97842 1.21034 0.92375 0.94854 0.98130 0.94025 0.89488 0.93906 0.92158 0.92189 0.85612 0.85108 0.84622 0.92528 0.90907 0.88272 0.89933 0.91205 0.94518 0.92103 0.92671 0.94193 0.94964 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.94 10.69 -35.23 -0.38 -4.32 16 3 C 0.10 0.91 6.06 36.01 0.22 1.13 16 4 C -0.10 -1.08 5.50 -104.68 -0.58 -1.66 16 5 C -0.08 -0.73 9.69 -39.49 -0.38 -1.12 16 6 C -0.13 -1.19 10.03 -39.64 -0.40 -1.59 16 7 C -0.08 -0.92 7.53 -39.19 -0.30 -1.21 16 8 C -0.12 -1.68 5.14 -104.96 -0.54 -2.22 16 9 C 0.56 9.04 7.33 -12.33 -0.09 8.95 16 10 O -0.54 -10.33 16.32 5.31 0.09 -10.24 16 11 N -0.59 -9.44 2.83 -172.94 -0.49 -9.93 16 12 C 0.06 0.86 7.02 59.85 0.42 1.28 16 13 C 0.13 2.18 3.57 -66.09 -0.24 1.94 16 14 H 0.11 1.86 6.99 -51.93 -0.36 1.50 16 15 C -0.14 -2.36 6.55 -24.46 -0.16 -2.52 16 16 C 0.09 1.97 3.82 -2.41 -0.01 1.96 16 17 N -0.61 -14.37 2.88 -169.93 -0.49 -14.86 16 18 C -0.33 -9.17 10.45 -15.06 -0.16 -9.32 16 19 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 20 C -0.02 -0.62 5.42 -17.43 -0.09 -0.71 16 21 N -0.92 -28.45 13.70 55.49 0.76 -27.69 16 22 Si 1.07 25.63 24.69 -169.99 -4.20 21.43 16 23 H -0.29 -6.75 6.54 56.52 0.37 -6.38 16 24 H -0.29 -6.22 5.96 56.52 0.34 -5.88 16 25 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 26 C 0.13 2.58 6.24 -3.06 -0.02 2.57 16 27 C -0.05 -0.57 9.30 -39.19 -0.36 -0.93 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.14 1.37 5.72 -52.48 -0.30 1.07 16 36 H 0.06 0.72 7.03 -51.93 -0.36 0.35 16 37 H 0.07 0.92 5.62 -51.93 -0.29 0.63 16 38 H 0.10 1.77 5.02 -51.93 -0.26 1.51 16 39 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.04 0.74 3.10 -51.93 -0.16 0.58 16 42 H 0.06 1.37 5.92 -51.93 -0.31 1.06 16 43 H 0.26 8.07 8.73 -40.82 -0.36 7.71 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.03 0.67 8.04 -51.93 -0.42 0.26 16 46 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 358.79 15.07 5.41 5.41 Total: -1.00 -33.65 358.79 -7.65 -41.30 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.78 Total: 1.05 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -1.57 Total: -2.16 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.22 Total: -52.48 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.29 Total: -14.56 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -4.20 Total: 21.43 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.65 -7.65 -41.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033241507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.170 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds