Wall clock time and date at job start Tue Mar 31 2020 12:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99561 * 2 1 4 4 C 1.50702 * 109.47149 * 179.97438 * 3 2 1 5 5 C 1.38387 * 119.92850 * 89.99755 * 4 3 2 6 6 C 1.38336 * 120.29474 * 180.02562 * 5 4 3 7 7 C 1.37972 * 120.14371 * 0.02562 * 6 5 4 8 8 C 1.39562 * 119.85264 * 359.97438 * 7 6 5 9 9 C 1.47851 * 120.14050 * 179.97438 * 8 7 6 10 10 O 1.21559 * 119.99296 * 221.66399 * 9 8 7 11 11 N 1.34769 * 120.00205 * 41.66458 * 9 8 7 12 12 C 1.46498 * 120.00240 * 356.03481 * 11 9 8 13 13 C 1.46502 * 119.99872 * 176.03765 * 11 9 8 14 14 H 1.09000 * 110.64148 * 1.68243 * 13 11 9 15 15 C 1.55156 * 110.87587 * 124.93407 * 13 11 9 16 16 C 1.55131 * 101.48786 * 82.76423 * 15 13 11 17 17 N 1.47426 * 104.71798 * 37.29600 * 16 15 13 18 18 C 1.36942 * 125.64688 * 155.81946 * 17 16 15 19 19 H 1.07998 * 119.99787 * 189.71487 * 18 17 16 20 20 C 1.38811 * 119.99674 * 9.70898 * 18 17 16 21 21 N 1.31625 * 119.99741 * 205.46473 * 20 18 17 22 22 Si 1.86797 * 120.00173 * 25.46530 * 20 18 17 23 23 H 1.48507 * 109.46872 * 269.99613 * 22 20 18 24 24 H 1.48495 * 109.47041 * 29.99517 * 22 20 18 25 25 H 1.48502 * 109.47145 * 150.00021 * 22 20 18 26 26 C 1.47024 * 108.70677 * 335.55235 * 17 16 15 27 27 C 1.37936 * 119.92690 * 270.25726 * 4 3 2 28 28 H 1.08993 * 109.47447 * 60.00325 * 1 2 3 29 29 H 1.09000 * 109.46385 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47157 * 300.00062 * 1 2 3 31 31 H 1.08998 * 109.47901 * 60.00062 * 3 2 1 32 32 H 1.08999 * 109.47257 * 299.99603 * 3 2 1 33 33 H 1.08001 * 119.85075 * 0.02562 * 5 4 3 34 34 H 1.07999 * 119.92449 * 180.02562 * 6 5 4 35 35 H 1.08005 * 120.07589 * 179.97438 * 7 6 5 36 36 H 1.09002 * 109.46993 * 269.86246 * 12 11 9 37 37 H 1.09002 * 109.47152 * 29.86471 * 12 11 9 38 38 H 1.09001 * 109.47516 * 149.86842 * 12 11 9 39 39 H 1.08995 * 111.00798 * 201.00560 * 15 13 11 40 40 H 1.09003 * 111.00287 * 324.82085 * 15 13 11 41 41 H 1.09002 * 110.49741 * 278.46022 * 16 15 13 42 42 H 1.08997 * 110.34583 * 156.05508 * 16 15 13 43 43 H 0.97001 * 119.99981 * 354.95389 * 21 20 18 44 44 H 1.09002 * 109.87706 * 120.70191 * 26 17 16 45 45 H 1.08992 * 109.88199 * 241.86732 * 26 17 16 46 46 H 1.07994 * 120.07890 * 0.02562 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2013 1.1319 -1.1984 6 6 5.5802 1.0222 -1.2067 7 6 6.2780 0.9662 -0.0177 8 6 5.5895 1.0209 1.1951 9 6 6.3307 0.9608 2.4729 10 8 5.9017 0.2926 3.3934 11 7 7.4818 1.6466 2.6172 12 6 8.0440 2.3814 1.4813 13 6 8.1710 1.6573 3.9099 14 1 7.6386 1.0410 4.6343 15 6 9.6396 1.1805 3.7575 16 6 10.3413 2.4843 3.2946 17 7 9.6731 3.5584 4.0517 18 6 10.2128 4.7820 4.3463 19 1 9.7095 5.4420 5.0372 20 6 11.4069 5.1738 3.7568 21 7 12.1795 6.0542 4.3573 22 14 11.9175 4.4516 2.1115 23 1 12.7203 3.2229 2.3380 24 1 10.7061 4.1130 1.3223 25 1 12.7322 5.4448 1.3664 26 6 8.3288 3.1008 4.4326 27 6 4.1976 1.1272 1.1964 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8465 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.6598 1.1750 -2.1319 34 1 6.1118 0.9804 -2.1459 35 1 7.3546 0.8802 -0.0254 36 1 8.7173 1.7297 0.9244 37 1 7.2370 2.7136 0.8282 38 1 8.5961 3.2475 1.8462 39 1 10.0392 0.8351 4.7109 40 1 9.7211 0.4033 2.9975 41 1 10.2031 2.6326 2.2236 42 1 11.4028 2.4510 3.5401 43 1 11.8812 6.4838 5.1743 44 1 8.2258 3.1155 5.5176 45 1 7.5756 3.7441 3.9779 46 1 3.6586 1.1653 2.1314 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033241507.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:14 Heat of formation + Delta-G solvation = -27.712417 kcal Electronic energy + Delta-G solvation = -26973.052616 eV Core-core repulsion = 23249.505284 eV Total energy + Delta-G solvation = -3723.547332 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.77343 -40.21855 -39.14377 -38.34447 -36.19172 -34.45018 -33.11342 -32.23771 -31.16997 -30.14047 -28.25002 -27.84455 -26.23963 -25.99970 -24.66207 -22.75705 -22.73292 -21.79013 -20.25207 -19.54428 -18.44630 -17.94280 -17.38734 -17.27881 -17.07319 -16.84017 -16.42020 -16.29302 -15.82791 -15.55187 -15.36584 -15.23782 -14.80178 -14.37515 -14.29427 -13.91592 -13.71964 -13.52149 -13.41855 -13.23873 -13.16042 -13.00402 -12.81590 -12.58986 -12.54504 -12.37482 -12.32896 -11.93526 -11.73987 -11.54522 -11.20987 -10.94677 -10.66643 -10.64721 -10.00833 -9.85714 -9.76244 -9.13845 -8.64230 -5.42520 -0.08475 0.27003 1.42416 1.54814 1.56598 1.72447 1.86472 2.56964 2.57544 3.04899 3.14712 3.30076 3.40904 3.67356 3.77444 3.79591 3.89402 4.04158 4.14031 4.15693 4.23617 4.32653 4.37087 4.38621 4.43861 4.52704 4.54125 4.57104 4.61626 4.72680 4.78580 4.82861 4.86833 4.87167 4.94289 4.97525 4.99110 5.14450 5.28740 5.36973 5.46843 5.50129 5.56223 5.88085 6.09760 6.18516 6.27187 6.83021 6.97355 7.46454 8.12243 8.85707 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.003031 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.218290 B = 9234.797307 C = 9639.817678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.413 6.413 3 C 0.102 3.898 4 C -0.109 4.109 5 C -0.074 4.074 6 C -0.121 4.121 7 C -0.085 4.085 8 C -0.147 4.147 9 C 0.558 3.442 10 O -0.579 6.579 11 N -0.589 5.589 12 C 0.058 3.942 13 C 0.137 3.863 14 H 0.107 0.893 15 C -0.125 4.125 16 C 0.090 3.910 17 N -0.622 5.622 18 C -0.319 4.319 19 H 0.037 0.963 20 C -0.078 4.078 21 N -0.957 5.957 22 Si 1.104 2.896 23 H -0.272 1.272 24 H -0.248 1.248 25 H -0.310 1.310 26 C 0.128 3.872 27 C -0.064 4.064 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.156 0.844 34 H 0.165 0.835 35 H 0.149 0.851 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.246 0.754 44 H 0.031 0.969 45 H 0.024 0.976 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.645 -13.286 -16.852 29.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.026 3.974 4 C -0.109 4.109 5 C -0.091 4.091 6 C -0.139 4.139 7 C -0.103 4.103 8 C -0.150 4.150 9 C 0.349 3.651 10 O -0.460 6.460 11 N -0.320 5.320 12 C -0.083 4.083 13 C 0.032 3.968 14 H 0.125 0.875 15 C -0.164 4.164 16 C -0.034 4.034 17 N -0.350 5.350 18 C -0.447 4.447 19 H 0.055 0.945 20 C -0.272 4.272 21 N -0.600 5.600 22 Si 0.929 3.071 23 H -0.199 1.199 24 H -0.172 1.172 25 H -0.238 1.238 26 C 0.002 3.998 27 C -0.083 4.083 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.173 0.827 34 H 0.183 0.817 35 H 0.167 0.833 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.106 0.894 40 H 0.120 0.880 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.049 0.951 45 H 0.042 0.958 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.543 -13.719 -17.430 28.911 hybrid contribution -1.250 1.063 2.296 2.822 sum -19.793 -12.656 -15.134 27.946 Atomic orbital electron populations 1.22946 0.79269 1.03822 1.01105 1.87938 1.21562 1.28163 1.95645 1.21420 0.88536 0.85044 1.02404 1.19729 0.95282 1.02820 0.93049 1.21611 0.94758 0.94838 0.97940 1.21496 0.94181 0.99486 0.98712 1.21830 1.01445 0.95973 0.91052 1.19764 0.94307 1.08037 0.92932 1.18810 0.80070 0.78398 0.87860 1.90733 1.68877 1.42964 1.43441 1.47730 1.22929 1.49222 1.12081 1.22527 1.00147 0.97259 0.88402 1.21916 0.93857 0.95730 0.85263 0.87500 1.23067 0.93078 0.96807 1.03405 1.22468 0.96745 0.88005 0.96197 1.44822 1.12489 1.12422 1.65248 1.19863 1.07602 0.94399 1.22851 0.94469 1.27234 0.93234 1.00048 1.06638 1.71039 1.34747 1.33635 1.20597 0.83445 0.76430 0.74620 0.72640 1.19876 1.17211 1.23838 1.21693 0.87092 0.93658 0.97341 1.21052 0.92384 0.96269 0.98606 0.92304 0.88799 0.93465 0.92127 0.89727 0.82671 0.81736 0.83298 0.89608 0.88984 0.91359 0.89381 0.88031 0.92683 0.93673 0.94470 0.95137 0.95788 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.41 -7.78 10.69 -148.98 -1.59 -9.37 16 3 C 0.10 1.59 6.06 71.24 0.43 2.02 16 4 C -0.11 -2.07 5.50 -19.90 -0.11 -2.18 16 5 C -0.07 -1.07 9.69 22.33 0.22 -0.85 16 6 C -0.12 -1.69 10.03 22.23 0.22 -1.46 16 7 C -0.08 -1.58 7.53 22.53 0.17 -1.41 16 8 C -0.15 -3.75 5.14 -20.09 -0.10 -3.85 16 9 C 0.56 17.55 7.33 86.79 0.64 18.19 16 10 O -0.58 -22.19 16.32 -3.90 -0.06 -22.26 16 11 N -0.59 -17.77 2.83 -819.35 -2.31 -20.09 16 12 C 0.06 1.52 7.02 127.77 0.90 2.41 16 13 C 0.14 4.58 3.57 46.18 0.16 4.74 16 14 H 0.11 3.65 6.99 -2.39 -0.02 3.64 16 15 C -0.12 -3.89 6.55 32.06 0.21 -3.68 16 16 C 0.09 3.51 3.82 86.93 0.33 3.84 16 17 N -0.62 -29.43 2.88 -691.54 -1.99 -31.42 16 18 C -0.32 -18.37 10.45 84.03 0.88 -17.49 16 19 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 20 C -0.08 -4.58 5.42 84.86 0.46 -4.12 16 21 N -0.96 -61.19 13.70 21.65 0.30 -60.89 16 22 Si 1.10 50.58 24.69 68.60 1.69 52.27 16 23 H -0.27 -11.50 6.54 99.48 0.65 -10.85 16 24 H -0.25 -9.65 5.96 99.48 0.59 -9.05 16 25 H -0.31 -14.67 7.11 99.48 0.71 -13.96 16 26 C 0.13 5.26 6.24 86.73 0.54 5.80 16 27 C -0.06 -1.57 9.30 22.53 0.21 -1.36 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.44 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.90 8.08 -2.39 -0.02 0.88 16 32 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 33 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 34 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.15 2.31 5.72 -2.91 -0.02 2.30 16 36 H 0.09 1.74 7.03 -2.39 -0.02 1.72 16 37 H 0.09 2.03 5.62 -2.39 -0.01 2.02 16 38 H 0.07 2.25 5.02 -2.39 -0.01 2.24 16 39 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.06 2.00 3.10 -2.39 -0.01 1.99 16 42 H 0.05 1.93 5.92 -2.39 -0.01 1.91 16 43 H 0.25 15.95 8.73 -92.71 -0.81 15.15 16 44 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.02 1.02 8.04 -2.39 -0.02 1.00 16 46 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -76.90 358.79 3.21 -73.69 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.77 Total: 15.96 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 6.40 Total: 2.10 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -4.01 Total: -112.39 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -1.66 Total: -31.63 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 1.69 Total: 52.27 kcal Total: -76.90 3.21 -73.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033241507.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.974 kcal (2) G-P(sol) polarization free energy of solvation -76.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds