Wall clock time and date at job start Tue Mar 31 2020 12:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35891 * 117.00395 * 2 1 4 4 C 1.38760 * 120.05416 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94204 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.05904 * 359.97438 * 5 4 3 7 7 C 1.38249 * 120.10957 * 359.78398 * 6 5 4 8 8 C 1.50702 * 119.96901 * 180.23200 * 7 6 5 9 9 C 1.50701 * 109.47377 * 270.23269 * 8 7 6 10 10 O 1.21281 * 119.99712 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99990 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99955 * 0.02562 * 11 9 8 13 13 C 1.46494 * 120.00137 * 180.02562 * 11 9 8 14 14 H 1.09008 * 110.88578 * 0.69767 * 13 11 9 15 15 C 1.55160 * 111.00498 * 236.82307 * 13 11 9 16 16 C 1.54322 * 102.93857 * 277.42389 * 15 13 11 17 17 N 1.47016 * 107.27610 * 337.80746 * 16 15 13 18 18 C 1.36937 * 125.65630 * 178.97715 * 17 16 15 19 19 H 1.07998 * 120.00381 * 179.97438 * 18 17 16 20 20 C 1.38811 * 119.99537 * 359.97438 * 18 17 16 21 21 N 1.31620 * 120.00294 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99933 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47249 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47417 * 119.99742 * 22 20 18 25 25 H 1.48500 * 109.47338 * 239.99352 * 22 20 18 26 26 C 1.47531 * 108.71274 * 358.94005 * 17 16 15 27 27 C 1.38161 * 120.05751 * 0.47070 * 7 6 5 28 28 H 1.09002 * 109.47126 * 60.00144 * 1 2 3 29 29 H 1.09004 * 109.47345 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47131 * 299.99853 * 1 2 3 31 31 H 1.07998 * 120.02951 * 0.04183 * 4 3 2 32 32 H 1.08006 * 119.96964 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.94752 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47357 * 30.23549 * 8 7 6 35 35 H 1.09008 * 109.46880 * 150.23373 * 8 7 6 36 36 H 1.08996 * 109.47101 * 90.00331 * 12 11 9 37 37 H 1.09004 * 109.47076 * 209.99763 * 12 11 9 38 38 H 1.08994 * 109.47165 * 329.99979 * 12 11 9 39 39 H 1.08997 * 110.72135 * 35.78727 * 15 13 11 40 40 H 1.09004 * 110.71979 * 158.88485 * 15 13 11 41 41 H 1.09003 * 109.88420 * 97.22433 * 16 15 13 42 42 H 1.09010 * 109.88486 * 218.23587 * 16 15 13 43 43 H 0.96995 * 120.00441 * 180.02562 * 21 20 18 44 44 H 1.08998 * 110.37201 * 265.30954 * 26 17 16 45 45 H 1.08999 * 110.41110 * 142.94907 * 26 17 16 46 46 H 1.08002 * 120.03267 * 179.79329 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0005 7 6 4.0560 2.5169 0.0050 8 6 5.5608 2.5980 0.0109 9 6 6.0679 2.6277 -1.4079 10 8 5.2844 2.5874 -2.3328 11 7 7.3920 2.6989 -1.6490 12 6 8.3384 2.7469 -0.5317 13 6 7.8849 2.7283 -3.0282 14 1 7.0575 2.6981 -3.7373 15 6 8.8819 1.5680 -3.2874 16 6 10.2119 2.1263 -2.7390 17 7 10.1003 3.5922 -2.7321 18 6 11.0628 4.4640 -2.2976 19 1 10.8835 5.5284 -2.3341 20 6 12.2688 3.9796 -1.8101 21 7 12.4871 2.6824 -1.7650 22 14 13.5815 5.1687 -1.2166 23 1 13.0930 6.5625 -1.3708 24 1 13.8794 4.9036 0.2139 25 1 14.8159 4.9853 -2.0214 26 6 8.7799 3.9689 -3.2718 27 6 3.4312 1.2847 0.0003 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2129 2.3204 -0.0003 32 1 1.3341 4.5114 -0.0011 33 1 3.7924 4.6379 -0.0005 34 1 5.8738 3.5053 0.5276 35 1 5.9696 1.7278 0.5247 36 1 8.6279 1.7327 -0.2570 37 1 9.2235 3.3094 -0.8292 38 1 7.8681 3.2344 0.3221 39 1 8.5839 0.6739 -2.7397 40 1 8.9595 1.3572 -4.3540 41 1 10.3767 1.7624 -1.7248 42 1 11.0366 1.8181 -3.3819 43 1 13.3297 2.3439 -1.4241 44 1 8.8524 4.1809 -4.3385 45 1 8.3837 4.8330 -2.7384 46 1 4.0206 0.3797 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033635761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:30 Heat of formation + Delta-G solvation = -8.495142 kcal Electronic energy + Delta-G solvation = -26823.509618 eV Core-core repulsion = 23100.795610 eV Total energy + Delta-G solvation = -3722.714008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.40365 -39.66857 -37.90307 -37.07059 -34.20498 -32.80379 -31.97909 -30.60006 -29.37423 -28.16538 -27.61984 -27.06493 -25.80809 -24.28417 -22.66905 -21.89473 -20.40165 -20.08781 -18.54867 -17.77391 -17.04291 -16.82702 -16.44048 -16.09847 -15.90616 -15.57044 -15.17526 -14.70527 -14.31863 -13.96150 -13.83908 -13.69215 -13.23928 -12.95825 -12.91726 -12.51158 -12.23437 -11.99131 -11.96317 -11.86808 -11.71637 -11.61903 -11.46708 -11.21026 -10.96081 -10.93361 -10.92143 -10.71791 -10.24237 -10.13560 -9.93210 -9.68852 -9.42140 -8.84061 -8.72010 -8.26394 -8.14935 -6.84995 -5.77876 -3.12188 1.22896 1.40794 2.93872 3.09142 3.35179 3.37599 3.42277 3.43987 3.78537 4.44441 4.60024 4.66251 4.87291 4.89767 4.91982 4.97776 5.11537 5.20608 5.26827 5.38116 5.38560 5.42932 5.52837 5.53125 5.62940 5.71133 5.76390 5.89915 5.96534 6.12825 6.19722 6.23344 6.34217 6.36490 6.52632 6.53753 6.55361 6.63966 6.66089 6.80610 7.12112 7.27768 7.51862 7.57121 7.77516 7.87734 8.18106 8.53229 9.15527 9.74856 10.40620 11.33049 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027446 B = 0.002648 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.927424 B =10571.531216 C =10842.171891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.125 3.875 4 C -0.212 4.212 5 C -0.081 4.081 6 C -0.141 4.141 7 C -0.020 4.020 8 C -0.103 4.103 9 C 0.512 3.488 10 O -0.547 6.547 11 N -0.588 5.588 12 C 0.058 3.942 13 C 0.123 3.877 14 H 0.099 0.901 15 C -0.155 4.155 16 C 0.174 3.826 17 N -0.603 5.603 18 C -0.230 4.230 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.125 3.875 27 C -0.136 4.136 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.049 0.951 37 H 0.125 0.875 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.042 0.958 43 H 0.252 0.748 44 H 0.031 0.969 45 H 0.044 0.956 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.362 -2.700 5.932 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.080 3.920 4 C -0.231 4.231 5 C -0.099 4.099 6 C -0.159 4.159 7 C -0.020 4.020 8 C -0.143 4.143 9 C 0.300 3.700 10 O -0.425 6.425 11 N -0.320 5.320 12 C -0.085 4.085 13 C 0.019 3.981 14 H 0.117 0.883 15 C -0.195 4.195 16 C 0.050 3.950 17 N -0.330 5.330 18 C -0.358 4.358 19 H 0.096 0.904 20 C -0.202 4.202 21 N -0.567 5.567 22 Si 0.741 3.259 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.218 1.218 26 C -0.002 4.002 27 C -0.155 4.155 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.068 0.932 37 H 0.143 0.857 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.048 0.952 45 H 0.062 0.938 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -20.447 -2.922 5.532 21.383 hybrid contribution 0.636 0.660 0.314 0.969 sum -19.811 -2.262 5.845 20.778 Atomic orbital electron populations 1.23024 0.78628 1.03760 1.01241 1.86064 1.21192 1.27103 1.88907 1.18923 0.92184 0.84056 0.96850 1.21165 0.99727 0.92481 1.09678 1.20851 0.94465 0.96884 0.97683 1.20909 0.93763 0.97943 1.03272 1.19120 0.93990 0.92484 0.96414 1.20732 0.92194 1.05392 0.95939 1.20378 0.82196 0.76677 0.90757 1.90676 1.55307 1.50637 1.45904 1.47706 1.05314 1.71362 1.07598 1.22304 0.95963 1.02468 0.87739 1.22228 0.96317 0.97095 0.82448 0.88341 1.23238 0.98106 0.97241 1.00878 1.21231 0.91060 0.83000 0.99736 1.44638 1.12546 1.02219 1.73592 1.19087 0.93459 0.88656 1.34646 0.90385 1.24792 0.97853 0.96079 1.01527 1.69974 1.24574 1.10478 1.51638 0.86072 0.81836 0.79907 0.78096 1.20546 1.21735 1.21805 1.21926 0.86694 0.94730 0.96865 1.20215 0.91330 0.98099 1.05828 0.92717 0.88378 0.92785 0.85772 0.85864 0.85958 0.87689 0.87873 0.93212 0.85733 0.92664 0.91949 0.91465 0.93057 0.94010 0.93740 0.95186 0.93794 0.85405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.75 10.50 -19.40 -0.20 -3.95 16 3 C 0.12 1.58 6.69 -39.21 -0.26 1.32 16 4 C -0.21 -2.33 9.04 -39.43 -0.36 -2.69 16 5 C -0.08 -0.88 10.04 -39.61 -0.40 -1.28 16 6 C -0.14 -1.72 9.70 -39.56 -0.38 -2.11 16 7 C -0.02 -0.26 4.37 -104.65 -0.46 -0.71 16 8 C -0.10 -1.30 4.38 -29.03 -0.13 -1.42 16 9 C 0.51 8.46 7.67 -10.99 -0.08 8.37 16 10 O -0.55 -10.76 15.41 5.56 0.09 -10.68 16 11 N -0.59 -10.07 2.91 -171.48 -0.50 -10.57 16 12 C 0.06 0.96 8.48 59.85 0.51 1.47 16 13 C 0.12 2.28 3.66 -65.78 -0.24 2.04 16 14 H 0.10 1.83 7.01 -51.92 -0.36 1.47 16 15 C -0.16 -2.92 6.43 -24.90 -0.16 -3.08 16 16 C 0.17 3.99 4.30 -3.07 -0.01 3.98 16 17 N -0.60 -14.36 1.90 -169.99 -0.32 -14.68 16 18 C -0.23 -6.03 9.87 -15.06 -0.15 -6.18 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.59 16 20 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 21 N -0.92 -25.56 10.31 55.49 0.57 -24.99 16 22 Si 0.91 21.22 29.55 -169.99 -5.02 16.20 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 C 0.12 2.54 6.51 -2.47 -0.02 2.53 16 27 C -0.14 -1.83 9.64 -39.43 -0.38 -2.21 16 28 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 31 H 0.12 1.04 6.30 -52.49 -0.33 0.71 16 32 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 33 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.10 1.13 7.35 -51.93 -0.38 0.75 16 35 H 0.10 1.12 8.05 -51.92 -0.42 0.71 16 36 H 0.05 0.80 7.99 -51.93 -0.41 0.39 16 37 H 0.12 2.57 4.67 -51.93 -0.24 2.33 16 38 H 0.05 0.74 6.44 -51.93 -0.33 0.41 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.26 6.24 -51.93 -0.32 0.94 16 42 H 0.04 1.08 7.51 -51.92 -0.39 0.69 16 43 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 365.87 15.07 5.51 5.51 Total: -1.00 -31.34 365.87 -8.43 -39.76 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -6.92 Total: 2.42 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -1.62 Total: 0.97 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.25 Total: -50.24 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.12 Total: -14.63 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.34 -8.43 -39.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033635761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.269 kcal (2) G-P(sol) polarization free energy of solvation -31.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds