Wall clock time and date at job start Tue Mar 31 2020 12:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35891 * 117.00395 * 2 1 4 4 C 1.38760 * 120.05416 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94204 * 180.02562 * 4 3 2 6 6 C 1.38281 * 120.05904 * 359.97438 * 5 4 3 7 7 C 1.38249 * 120.10957 * 359.78398 * 6 5 4 8 8 C 1.50702 * 119.96901 * 180.23200 * 7 6 5 9 9 C 1.50701 * 109.47377 * 270.23269 * 8 7 6 10 10 O 1.21281 * 119.99712 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99990 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99955 * 0.02562 * 11 9 8 13 13 C 1.46494 * 120.00137 * 180.02562 * 11 9 8 14 14 H 1.09008 * 110.88578 * 0.69767 * 13 11 9 15 15 C 1.55160 * 111.00498 * 236.82307 * 13 11 9 16 16 C 1.54322 * 102.93857 * 277.42389 * 15 13 11 17 17 N 1.47016 * 107.27610 * 337.80746 * 16 15 13 18 18 C 1.36937 * 125.65630 * 178.97715 * 17 16 15 19 19 H 1.07998 * 120.00381 * 179.97438 * 18 17 16 20 20 C 1.38811 * 119.99537 * 359.97438 * 18 17 16 21 21 N 1.31620 * 120.00294 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99933 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47249 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47417 * 119.99742 * 22 20 18 25 25 H 1.48500 * 109.47338 * 239.99352 * 22 20 18 26 26 C 1.47531 * 108.71274 * 358.94005 * 17 16 15 27 27 C 1.38161 * 120.05751 * 0.47070 * 7 6 5 28 28 H 1.09002 * 109.47126 * 60.00144 * 1 2 3 29 29 H 1.09004 * 109.47345 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47131 * 299.99853 * 1 2 3 31 31 H 1.07998 * 120.02951 * 0.04183 * 4 3 2 32 32 H 1.08006 * 119.96964 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.94752 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47357 * 30.23549 * 8 7 6 35 35 H 1.09008 * 109.46880 * 150.23373 * 8 7 6 36 36 H 1.08996 * 109.47101 * 90.00331 * 12 11 9 37 37 H 1.09004 * 109.47076 * 209.99763 * 12 11 9 38 38 H 1.08994 * 109.47165 * 329.99979 * 12 11 9 39 39 H 1.08997 * 110.72135 * 35.78727 * 15 13 11 40 40 H 1.09004 * 110.71979 * 158.88485 * 15 13 11 41 41 H 1.09003 * 109.88420 * 97.22433 * 16 15 13 42 42 H 1.09010 * 109.88486 * 218.23587 * 16 15 13 43 43 H 0.96995 * 120.00441 * 180.02562 * 21 20 18 44 44 H 1.08998 * 110.37201 * 265.30954 * 26 17 16 45 45 H 1.08999 * 110.41110 * 142.94907 * 26 17 16 46 46 H 1.08002 * 120.03267 * 179.79329 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0005 7 6 4.0560 2.5169 0.0050 8 6 5.5608 2.5980 0.0109 9 6 6.0679 2.6277 -1.4079 10 8 5.2844 2.5874 -2.3328 11 7 7.3920 2.6989 -1.6490 12 6 8.3384 2.7469 -0.5317 13 6 7.8849 2.7283 -3.0282 14 1 7.0575 2.6981 -3.7373 15 6 8.8819 1.5680 -3.2874 16 6 10.2119 2.1263 -2.7390 17 7 10.1003 3.5922 -2.7321 18 6 11.0628 4.4640 -2.2976 19 1 10.8835 5.5284 -2.3341 20 6 12.2688 3.9796 -1.8101 21 7 12.4871 2.6824 -1.7650 22 14 13.5815 5.1687 -1.2166 23 1 13.0930 6.5625 -1.3708 24 1 13.8794 4.9036 0.2139 25 1 14.8159 4.9853 -2.0214 26 6 8.7799 3.9689 -3.2718 27 6 3.4312 1.2847 0.0003 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2129 2.3204 -0.0003 32 1 1.3341 4.5114 -0.0011 33 1 3.7924 4.6379 -0.0005 34 1 5.8738 3.5053 0.5276 35 1 5.9696 1.7278 0.5247 36 1 8.6279 1.7327 -0.2570 37 1 9.2235 3.3094 -0.8292 38 1 7.8681 3.2344 0.3221 39 1 8.5839 0.6739 -2.7397 40 1 8.9595 1.3572 -4.3540 41 1 10.3767 1.7624 -1.7248 42 1 11.0366 1.8181 -3.3819 43 1 13.3297 2.3439 -1.4241 44 1 8.8524 4.1809 -4.3385 45 1 8.3837 4.8330 -2.7384 46 1 4.0206 0.3797 0.0013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033635761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:29 Heat of formation + Delta-G solvation = -25.639468 kcal Electronic energy + Delta-G solvation = -26824.253051 eV Core-core repulsion = 23100.795610 eV Total energy + Delta-G solvation = -3723.457442 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.46653 -40.82327 -39.20777 -38.21197 -35.78668 -34.20084 -33.37153 -31.47274 -31.11758 -29.65758 -28.60484 -27.89784 -27.34279 -26.07450 -23.55999 -22.99889 -21.93808 -21.59852 -19.89755 -18.89938 -18.65237 -18.23638 -17.30123 -17.04372 -16.96230 -16.64390 -16.59801 -16.36403 -15.63551 -15.53275 -15.04647 -14.66512 -14.41120 -14.26622 -14.15403 -13.82646 -13.45001 -13.39893 -13.31738 -13.13738 -12.96151 -12.79465 -12.77889 -12.74231 -12.45051 -12.26148 -11.96357 -11.95640 -11.92755 -11.79182 -11.73259 -11.51382 -10.77722 -10.70035 -9.77413 -9.63651 -9.12898 -8.77539 -7.80988 -5.16155 0.33499 0.52079 1.49547 1.51368 1.60345 1.65605 2.07893 2.39550 2.52191 2.83308 3.38789 3.63278 3.68401 3.78232 3.88997 3.94586 4.07581 4.13238 4.21941 4.31880 4.33429 4.40019 4.40536 4.46250 4.55828 4.64453 4.65236 4.73293 4.73917 4.76924 4.81539 4.91490 4.99967 5.05806 5.09121 5.32060 5.34082 5.48559 5.50950 5.63426 5.65227 5.70138 5.82188 5.83489 6.21584 6.48028 6.54531 7.13968 7.21530 7.78897 8.43852 9.28777 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.027446 B = 0.002648 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.927424 B =10571.531216 C =10842.171891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.340 6.340 3 C 0.111 3.889 4 C -0.212 4.212 5 C -0.082 4.082 6 C -0.155 4.155 7 C -0.034 4.034 8 C -0.095 4.095 9 C 0.513 3.487 10 O -0.580 6.580 11 N -0.591 5.591 12 C 0.066 3.934 13 C 0.133 3.867 14 H 0.102 0.898 15 C -0.142 4.142 16 C 0.188 3.812 17 N -0.614 5.614 18 C -0.235 4.235 19 H 0.080 0.920 20 C -0.057 4.057 21 N -0.946 5.946 22 Si 0.972 3.028 23 H -0.269 1.269 24 H -0.291 1.291 25 H -0.299 1.299 26 C 0.126 3.874 27 C -0.160 4.160 28 H 0.061 0.939 29 H 0.117 0.883 30 H 0.068 0.932 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.031 0.969 42 H 0.004 0.996 43 H 0.246 0.754 44 H 0.034 0.966 45 H 0.044 0.956 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.403 -1.857 6.812 23.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.066 3.934 4 C -0.231 4.231 5 C -0.100 4.100 6 C -0.173 4.173 7 C -0.035 4.035 8 C -0.134 4.134 9 C 0.303 3.697 10 O -0.460 6.460 11 N -0.322 5.322 12 C -0.077 4.077 13 C 0.028 3.972 14 H 0.120 0.880 15 C -0.181 4.181 16 C 0.063 3.937 17 N -0.341 5.341 18 C -0.364 4.364 19 H 0.098 0.902 20 C -0.251 4.251 21 N -0.595 5.595 22 Si 0.801 3.199 23 H -0.193 1.193 24 H -0.217 1.217 25 H -0.226 1.226 26 C 0.000 4.000 27 C -0.179 4.179 28 H 0.080 0.920 29 H 0.135 0.865 30 H 0.087 0.913 31 H 0.168 0.832 32 H 0.169 0.831 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.070 0.930 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.022 0.978 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.063 0.937 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.518 -2.067 6.417 23.506 hybrid contribution 1.156 0.391 0.015 1.220 sum -21.362 -1.676 6.432 22.372 Atomic orbital electron populations 1.23332 0.76445 1.05492 1.02259 1.86036 1.23546 1.27021 1.88856 1.19128 0.92278 0.84991 0.96968 1.21495 1.01081 0.91923 1.08574 1.21231 0.94325 0.98012 0.96452 1.21178 0.94601 0.98108 1.03443 1.19227 0.94237 0.92779 0.97215 1.20753 0.92115 1.07269 0.93312 1.20998 0.81324 0.75260 0.92087 1.90659 1.55913 1.52027 1.47395 1.47754 1.05874 1.71540 1.07032 1.22175 0.94736 1.02346 0.88435 1.22034 0.95803 0.95599 0.83752 0.87967 1.23104 0.95769 0.97597 1.01609 1.20938 0.91972 0.82875 0.97877 1.44778 1.13389 1.02398 1.73524 1.19365 0.93983 0.89174 1.33874 0.90211 1.25496 0.99776 0.97449 1.02338 1.70162 1.24616 1.11947 1.52739 0.85106 0.78975 0.78644 0.77146 1.19342 1.21749 1.22604 1.22000 0.85566 0.95699 0.96768 1.20368 0.92168 0.98226 1.07109 0.92005 0.86473 0.91336 0.83197 0.83121 0.84913 0.85439 0.86131 0.93014 0.89524 0.89255 0.90781 0.90205 0.95127 0.97821 0.94420 0.94789 0.93722 0.85905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -7.66 10.50 -92.33 -0.97 -8.63 16 3 C 0.11 2.70 6.69 22.51 0.15 2.85 16 4 C -0.21 -4.21 9.04 22.37 0.20 -4.00 16 5 C -0.08 -1.60 10.04 22.25 0.22 -1.38 16 6 C -0.16 -3.50 9.70 22.28 0.22 -3.29 16 7 C -0.03 -0.85 4.37 -19.88 -0.09 -0.94 16 8 C -0.10 -2.21 4.38 29.10 0.13 -2.08 16 9 C 0.51 16.19 7.67 87.66 0.67 16.87 16 10 O -0.58 -22.23 15.41 -3.03 -0.05 -22.28 16 11 N -0.59 -19.49 2.91 -814.83 -2.37 -21.86 16 12 C 0.07 2.10 8.48 127.77 1.08 3.18 16 13 C 0.13 4.81 3.66 46.38 0.17 4.98 16 14 H 0.10 3.69 7.01 -2.38 -0.02 3.67 16 15 C -0.14 -5.26 6.43 31.78 0.20 -5.05 16 16 C 0.19 8.80 4.30 86.73 0.37 9.17 16 17 N -0.61 -29.52 1.90 -691.73 -1.31 -30.83 16 18 C -0.24 -12.38 9.87 84.03 0.83 -11.55 16 19 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 20 C -0.06 -3.07 5.49 84.86 0.47 -2.61 16 21 N -0.95 -53.88 10.31 21.65 0.22 -53.65 16 22 Si 0.97 43.94 29.55 68.60 2.03 45.97 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 25 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 26 C 0.13 5.07 6.51 86.83 0.56 5.64 16 27 C -0.16 -4.21 9.64 22.37 0.22 -3.99 16 28 H 0.06 0.68 7.66 -2.39 -0.02 0.66 16 29 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 31 H 0.15 2.06 6.30 -2.91 -0.02 2.04 16 32 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 33 H 0.13 2.61 8.06 -2.91 -0.02 2.58 16 34 H 0.13 2.36 7.35 -2.39 -0.02 2.34 16 35 H 0.12 2.37 8.05 -2.38 -0.02 2.35 16 36 H 0.05 1.62 7.99 -2.39 -0.02 1.60 16 37 H 0.09 3.55 4.67 -2.39 -0.01 3.54 16 38 H 0.09 2.19 6.44 -2.39 -0.02 2.18 16 39 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.03 1.55 6.24 -2.39 -0.01 1.53 16 42 H 0.00 0.19 7.51 -2.38 -0.02 0.17 16 43 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 44 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.12 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -68.60 365.87 5.05 -63.56 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 0.97 Total: 18.59 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 6.52 Total: 9.13 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -3.46 Total: -106.34 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -1.02 Total: -30.91 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -68.60 5.05 -63.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033635761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.917 kcal (2) G-P(sol) polarization free energy of solvation -68.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds