Wall clock time and date at job start Tue Mar 31 2020 12:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35658 * 116.99978 * 2 1 4 4 C 1.38702 * 120.14939 * 359.97210 * 3 2 1 5 5 C 1.38061 * 120.08280 * 179.97438 * 4 3 2 6 6 C 1.38552 * 120.38955 * 0.04996 * 5 4 3 7 7 C 1.37788 * 120.29853 * 359.69587 * 6 5 4 8 8 C 1.39709 * 119.91015 * 0.53275 * 7 6 5 9 9 C 1.47531 * 120.19091 * 179.77049 * 8 7 6 10 10 O 1.21590 * 119.99850 * 179.72464 * 9 8 7 11 11 N 1.34775 * 120.00345 * 359.71756 * 9 8 7 12 12 C 1.46497 * 120.00320 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.26026 * 35.32155 * 12 11 9 14 14 C 1.50878 * 109.36749 * 155.00399 * 12 11 9 15 15 C 1.52570 * 109.35827 * 212.07765 * 14 12 11 16 16 C 1.47092 * 114.32633 * 274.98606 * 15 14 12 17 17 C 1.54868 * 110.32051 * 62.79962 * 16 15 14 18 18 N 1.44580 * 109.60245 * 288.73369 * 17 16 15 19 19 C 1.36929 * 118.64288 * 270.70770 * 18 17 16 20 20 H 1.07994 * 120.00435 * 145.31796 * 19 18 17 21 21 C 1.38817 * 120.00059 * 325.31304 * 19 18 17 22 22 N 1.31618 * 120.00131 * 330.03635 * 21 19 18 23 23 Si 1.86804 * 120.00087 * 150.03072 * 21 19 18 24 24 H 1.48494 * 109.47295 * 180.02562 * 23 21 19 25 25 H 1.48496 * 109.46756 * 60.00295 * 23 21 19 26 26 H 1.48501 * 109.46873 * 300.00491 * 23 21 19 27 27 C 1.47596 * 122.70933 * 90.98220 * 18 17 16 28 28 H 1.08995 * 109.47363 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47575 * 300.00309 * 1 2 3 30 30 H 1.09010 * 109.47123 * 60.00179 * 1 2 3 31 31 H 1.08002 * 119.96113 * 0.03005 * 4 3 2 32 32 H 1.07995 * 119.80556 * 180.02562 * 5 4 3 33 33 H 1.08002 * 119.84829 * 179.97438 * 6 5 4 34 34 H 1.08000 * 120.04374 * 180.29796 * 7 6 5 35 35 H 0.97003 * 119.99466 * 0.02562 * 11 9 8 36 36 H 1.08995 * 109.49363 * 92.10816 * 14 12 11 37 37 H 1.09006 * 109.49324 * 332.04211 * 14 12 11 38 38 H 1.09000 * 108.51222 * 153.73021 * 15 14 12 39 39 H 1.09006 * 108.39117 * 36.15093 * 15 14 12 40 40 H 1.08991 * 109.32672 * 302.54019 * 16 15 14 41 41 H 1.09002 * 109.18810 * 182.97416 * 16 15 14 42 42 H 1.09001 * 109.44591 * 168.69299 * 17 16 15 43 43 H 1.09006 * 109.42502 * 48.76113 * 17 16 15 44 44 H 0.97003 * 119.99901 * 355.10821 * 22 21 19 45 45 H 1.09007 * 108.94966 * 78.29928 * 27 18 17 46 46 H 1.09000 * 108.94673 * 196.92218 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2924 2.3739 -0.0006 5 6 1.9206 3.6033 0.0000 6 6 3.3038 3.6837 0.0000 7 6 4.0668 2.5363 0.0059 8 6 3.4441 1.2856 0.0005 9 6 4.2550 0.0532 0.0016 10 8 3.7095 -1.0335 0.0020 11 7 5.6005 0.1317 0.0021 12 6 6.4057 -1.0922 0.0026 13 1 5.9021 -1.8541 -0.5923 14 6 7.7586 -0.8012 -0.5984 15 6 8.2687 -2.0441 -1.3215 16 6 8.9628 -3.0079 -0.4538 17 6 7.9933 -3.5600 0.6203 18 7 7.7038 -2.5269 1.5894 19 6 8.5182 -2.4067 2.6837 20 1 8.7246 -1.4313 3.0986 21 6 9.0783 -3.5387 3.2597 22 7 8.4435 -4.6901 3.2003 23 14 10.7332 -3.4279 4.1192 24 1 11.1082 -4.7649 4.6454 25 1 10.6438 -2.4606 5.2424 26 1 11.7633 -2.9700 3.1524 27 6 6.5633 -1.6004 1.4510 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 0.2138 2.3195 -0.0005 32 1 1.3304 4.5077 -0.0001 33 1 3.7861 4.6500 0.0000 34 1 5.1446 2.6037 0.0108 35 1 6.0356 0.9986 0.0021 36 1 8.4570 -0.5285 0.1927 37 1 7.6722 0.0222 -1.3074 38 1 8.9548 -1.7298 -2.1080 39 1 7.4189 -2.5453 -1.7851 40 1 9.8008 -2.5131 0.0369 41 1 9.3361 -3.8325 -1.0610 42 1 8.4545 -4.4102 1.1228 43 1 7.0670 -3.8795 0.1426 44 1 7.5533 -4.7340 2.8172 45 1 5.6504 -2.1154 1.7503 46 1 6.7186 -0.7468 2.1108 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034495246.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:21 Heat of formation + Delta-G solvation = -44.810084 kcal Electronic energy + Delta-G solvation = -27271.410977 eV Core-core repulsion = 23547.122235 eV Total energy + Delta-G solvation = -3724.288742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.67091 -40.49719 -39.21789 -38.27196 -36.37577 -35.06409 -33.12937 -32.55604 -31.13277 -31.01067 -28.23649 -27.75873 -26.19083 -25.39859 -24.24877 -22.99390 -21.93471 -21.42946 -20.89957 -19.43098 -19.23974 -18.15494 -17.58850 -16.96939 -16.79200 -16.57834 -16.27921 -15.89716 -15.74608 -15.60439 -15.41487 -15.36528 -14.72772 -14.45406 -14.43067 -14.17135 -13.98285 -13.56035 -13.40376 -13.11244 -12.79585 -12.60069 -12.57712 -12.40839 -12.15395 -12.06458 -12.04540 -11.88635 -11.81554 -11.59382 -11.40307 -11.24358 -10.89702 -10.52434 -10.19250 -9.98260 -9.25538 -8.87477 -8.19033 -5.49522 -0.14956 0.39973 1.58535 1.66233 1.85314 1.87734 2.09333 2.33832 2.66889 2.84710 3.17926 3.48308 3.70013 3.78435 3.81108 3.94591 3.99173 4.15167 4.20923 4.25492 4.31784 4.32708 4.33598 4.41419 4.47649 4.51641 4.66109 4.70070 4.78625 4.84293 4.92510 4.98901 5.03407 5.16253 5.22143 5.25398 5.31289 5.33943 5.42432 5.45173 5.54377 5.60085 5.76458 5.91452 6.35127 6.38119 6.59177 7.11067 7.27320 7.80103 8.18118 8.91581 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018524 B = 0.003143 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.199733 B = 8905.150103 C = 8998.619434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.323 6.323 3 C 0.157 3.843 4 C -0.223 4.223 5 C -0.045 4.045 6 C -0.163 4.163 7 C -0.047 4.047 8 C -0.203 4.203 9 C 0.549 3.451 10 O -0.573 6.573 11 N -0.708 5.708 12 C 0.152 3.848 13 H 0.056 0.944 14 C -0.104 4.104 15 C -0.099 4.099 16 C -0.128 4.128 17 C 0.142 3.858 18 N -0.596 5.596 19 C -0.362 4.362 20 H 0.045 0.955 21 C -0.069 4.069 22 N -0.925 5.925 23 Si 1.112 2.888 24 H -0.293 1.293 25 H -0.276 1.276 26 H -0.273 1.273 27 C 0.148 3.852 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.167 0.833 33 H 0.164 0.836 34 H 0.152 0.848 35 H 0.412 0.588 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.016 0.984 44 H 0.249 0.751 45 H -0.025 1.025 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.564 20.985 -11.145 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.235 6.235 3 C 0.109 3.891 4 C -0.241 4.241 5 C -0.063 4.063 6 C -0.181 4.181 7 C -0.066 4.066 8 C -0.207 4.207 9 C 0.339 3.661 10 O -0.453 6.453 11 N -0.361 5.361 12 C 0.046 3.954 13 H 0.074 0.926 14 C -0.142 4.142 15 C -0.137 4.137 16 C -0.168 4.168 17 C 0.015 3.985 18 N -0.319 5.319 19 C -0.492 4.492 20 H 0.063 0.937 21 C -0.266 4.266 22 N -0.565 5.565 23 Si 0.936 3.064 24 H -0.219 1.219 25 H -0.202 1.202 26 H -0.199 1.199 27 C 0.022 3.978 28 H 0.122 0.878 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.174 0.826 32 H 0.184 0.816 33 H 0.182 0.818 34 H 0.170 0.830 35 H 0.251 0.749 36 H 0.083 0.917 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.059 0.941 45 H -0.007 1.007 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.733 19.129 -10.389 24.271 hybrid contribution -1.634 0.482 -0.295 1.729 sum -12.367 19.612 -10.684 25.529 Atomic orbital electron populations 1.23399 0.76744 1.05173 1.02732 1.86355 1.23176 1.26974 1.86953 1.19488 0.91332 0.85717 0.92598 1.21551 1.01411 0.91424 1.09716 1.21635 0.95150 0.97643 0.91886 1.21433 0.94086 0.99066 1.03520 1.21475 1.01247 0.90004 0.93868 1.19452 0.91227 0.93941 1.16101 1.18654 0.82560 0.89236 0.75695 1.90795 1.72501 1.30976 1.50992 1.45894 1.05324 1.09773 1.75101 1.21049 0.92128 0.86393 0.95841 0.92582 1.21193 0.93949 0.98971 1.00050 1.20249 1.00082 0.95333 0.98047 1.21209 0.99107 0.99124 0.97360 1.20909 0.95438 0.92232 0.89876 1.43736 1.29042 1.36866 1.22296 1.20090 1.26163 0.93804 1.09127 0.93717 1.27272 1.07562 0.92980 0.98814 1.70907 1.13478 1.29043 1.43080 0.82915 0.72343 0.75425 0.75697 1.21938 1.20209 1.19931 1.21567 0.88197 0.92744 0.95329 0.87834 0.91056 0.90610 0.82570 0.81572 0.81811 0.83022 0.74928 0.91658 0.88766 0.89980 0.93384 0.93084 0.91732 0.93664 0.96527 0.94132 1.00674 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.81 113.37 1.11 1.36 16 2 O -0.32 -9.93 8.57 -68.81 -0.59 -10.51 16 3 C 0.16 4.19 6.70 22.84 0.15 4.34 16 4 C -0.22 -3.82 9.03 22.34 0.20 -3.62 16 5 C -0.05 -0.55 10.03 22.30 0.22 -0.33 16 6 C -0.16 -2.10 10.02 22.24 0.22 -1.87 16 7 C -0.05 -0.88 9.54 22.52 0.21 -0.66 16 8 C -0.20 -5.68 5.89 -20.01 -0.12 -5.80 16 9 C 0.55 19.82 7.72 86.69 0.67 20.49 16 10 O -0.57 -26.54 14.82 16.92 0.25 -26.29 16 11 N -0.71 -22.17 4.93 -446.92 -2.20 -24.38 16 12 C 0.15 5.76 2.27 44.74 0.10 5.86 16 13 H 0.06 2.42 6.74 -2.39 -0.02 2.40 16 14 C -0.10 -3.29 5.07 29.76 0.15 -3.14 16 15 C -0.10 -3.21 5.16 28.61 0.15 -3.07 16 16 C -0.13 -5.08 5.74 29.40 0.17 -4.92 16 17 C 0.14 7.09 4.89 87.38 0.43 7.52 16 18 N -0.60 -31.47 2.01 -697.68 -1.40 -32.88 16 19 C -0.36 -20.77 9.17 84.04 0.77 -20.00 16 20 H 0.05 2.57 7.97 -2.91 -0.02 2.55 16 21 C -0.07 -3.98 4.68 84.86 0.40 -3.59 16 22 N -0.92 -58.22 12.18 21.65 0.26 -57.96 16 23 Si 1.11 51.41 30.01 68.60 2.06 53.47 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 27 C 0.15 7.12 5.86 86.61 0.51 7.62 16 28 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.07 1.01 7.66 -2.39 -0.02 1.00 16 30 H 0.08 1.00 7.66 -2.38 -0.02 0.98 16 31 H 0.16 1.81 6.30 -2.91 -0.02 1.79 16 32 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 33 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 34 H 0.15 2.02 6.40 -2.91 -0.02 2.00 16 35 H 0.41 9.43 6.57 -92.71 -0.61 8.82 16 36 H 0.06 2.33 7.49 -2.39 -0.02 2.31 16 37 H 0.09 2.25 7.94 -2.38 -0.02 2.23 16 38 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.05 1.58 7.35 -2.38 -0.02 1.56 16 40 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 42 H 0.05 2.58 5.28 -2.39 -0.01 2.57 16 43 H 0.02 0.82 8.06 -2.38 -0.02 0.80 16 44 H 0.25 16.40 7.39 -92.71 -0.69 15.72 16 45 H -0.02 -1.38 8.14 -2.38 -0.02 -1.40 16 46 H 0.05 2.18 7.86 -2.39 -0.02 2.16 16 Total: -1.00 -82.42 362.92 4.19 -78.22 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.46 Total: 20.13 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 5.35 Total: 0.19 kcal Atomic # 7 Polarization: -111.87 SS G_CDS: -3.34 Total: -115.21 kcal Atomic # 8 Polarization: -36.47 SS G_CDS: -0.34 Total: -36.81 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.06 Total: 53.47 kcal Total: -82.42 4.19 -78.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034495246.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.414 kcal (2) G-P(sol) polarization free energy of solvation -82.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds