Wall clock time and date at job start Tue Mar 31 2020 12:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35907 * 116.99825 * 2 1 4 4 C 1.38852 * 119.98860 * 359.97438 * 3 2 1 5 5 C 1.38247 * 120.23857 * 179.97438 * 4 3 2 6 6 C 1.38002 * 120.20708 * 0.02562 * 5 4 3 7 7 C 1.39570 * 119.96836 * 359.97438 * 6 5 4 8 8 C 1.47859 * 120.11856 * 180.02562 * 7 6 5 9 9 O 1.21554 * 119.99893 * 179.97438 * 8 7 6 10 10 N 1.34778 * 120.00000 * 359.97438 * 8 7 6 11 11 C 1.46499 * 119.99771 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47391 * 34.99730 * 11 10 8 13 13 C 1.53002 * 109.46799 * 274.99826 * 11 10 8 14 14 C 1.53006 * 109.46711 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47445 * 59.99695 * 14 13 11 16 16 C 1.53002 * 109.47092 * 300.00075 * 15 14 13 17 17 C 1.53000 * 109.46840 * 155.00060 * 11 10 8 18 18 H 1.08992 * 109.47399 * 59.99666 * 17 11 10 19 19 N 1.46500 * 109.47023 * 299.99603 * 17 11 10 20 20 C 1.36933 * 119.99983 * 155.00375 * 19 17 11 21 21 H 1.08002 * 120.00189 * 359.97438 * 20 19 17 22 22 C 1.38815 * 120.00104 * 179.97438 * 20 19 17 23 23 N 1.31615 * 119.99793 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99960 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47080 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46740 * 120.00460 * 24 22 20 27 27 H 1.48498 * 109.47419 * 240.00212 * 24 22 20 28 28 C 1.38459 * 119.98107 * 180.25510 * 3 2 1 29 29 H 1.08998 * 109.46871 * 60.00107 * 1 2 3 30 30 H 1.08999 * 109.46746 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46942 * 300.00737 * 1 2 3 32 32 H 1.07999 * 119.87742 * 359.95744 * 4 3 2 33 33 H 1.07996 * 119.89202 * 180.02562 * 5 4 3 34 34 H 1.07999 * 120.01253 * 180.02562 * 6 5 4 35 35 H 0.96998 * 119.99599 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47075 * 299.99543 * 13 11 10 37 37 H 1.08996 * 109.47407 * 60.00500 * 13 11 10 38 38 H 1.09001 * 109.46726 * 179.97438 * 14 13 11 39 39 H 1.09002 * 109.46589 * 299.99365 * 14 13 11 40 40 H 1.09002 * 109.47045 * 59.99942 * 15 14 13 41 41 H 1.09000 * 109.47140 * 179.97438 * 15 14 13 42 42 H 1.09000 * 109.46497 * 180.02562 * 16 15 14 43 43 H 1.09002 * 109.47067 * 299.99853 * 16 15 14 44 44 H 0.97006 * 120.00223 * 335.00118 * 19 17 11 45 45 H 0.97001 * 120.00169 * 179.97438 * 23 22 20 46 46 H 1.07997 * 120.10546 * 0.03568 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2895 2.3753 -0.0005 5 6 1.9117 3.6098 0.0000 6 6 3.2892 3.6931 0.0005 7 6 4.0581 2.5283 0.0011 8 6 5.5342 2.6136 0.0022 9 8 6.2017 1.5977 0.0032 10 7 6.1396 3.8178 0.0022 11 6 7.6021 3.9023 0.0028 12 1 8.0137 3.0827 -0.5863 13 6 8.1179 3.8065 1.4401 14 6 9.6454 3.8954 1.4407 15 6 10.0789 5.2300 0.8311 16 6 9.5631 5.3257 -0.6062 17 6 8.0361 5.2367 -0.6069 18 1 7.6245 6.0563 -0.0179 19 7 7.5422 5.3284 -1.9831 20 6 7.3406 6.5548 -2.5579 21 1 7.5452 7.4545 -1.9966 22 6 6.8731 6.6417 -3.8621 23 7 6.6232 5.5453 -4.5460 24 14 6.5974 8.3147 -4.6460 25 1 6.9500 9.3808 -3.6742 26 1 7.4531 8.4428 -5.8529 27 1 5.1705 8.4504 -5.0342 28 6 3.4287 1.2830 -0.0053 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5140 0.8899 32 1 0.2111 2.3162 -0.0017 33 1 1.3179 4.5119 0.0000 34 1 3.7720 4.6592 0.0014 35 1 5.6069 4.6284 0.0011 36 1 7.7064 4.6261 2.0291 37 1 7.8088 2.8558 1.8745 38 1 10.0128 3.8276 2.4647 39 1 10.0572 3.0759 0.8516 40 1 9.6670 6.0494 1.4203 41 1 11.1670 5.2935 0.8320 42 1 9.8723 6.2764 -1.0405 43 1 9.9749 4.5063 -1.1953 44 1 7.3580 4.5203 -2.4872 45 1 6.2962 5.6059 -5.4572 46 1 4.0183 0.3782 -0.0101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085404162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:45 Heat of formation + Delta-G solvation = -69.705684 kcal Electronic energy + Delta-G solvation = -26886.111806 eV Core-core repulsion = 23160.743510 eV Total energy + Delta-G solvation = -3725.368296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.57811 -40.70262 -39.30241 -37.99241 -35.80930 -35.21707 -32.99890 -32.35636 -31.57248 -30.31824 -29.19325 -28.16418 -25.68623 -25.00574 -23.46500 -23.09366 -22.47198 -21.42210 -20.84880 -19.59991 -19.02337 -17.63376 -17.57452 -17.12474 -16.71815 -16.69628 -16.54273 -16.01011 -15.78721 -15.36874 -15.16237 -14.84904 -14.72258 -14.61926 -14.45536 -14.07312 -13.74343 -13.53518 -13.43821 -13.16773 -12.91271 -12.84379 -12.79708 -12.19593 -12.16225 -12.05473 -12.00274 -11.99767 -11.95652 -11.64364 -11.43265 -11.18693 -11.03011 -10.80417 -10.18774 -9.90791 -9.30229 -8.98859 -7.89658 -5.19080 -0.23211 0.36389 1.48916 1.50257 1.59566 1.81425 2.02648 2.46267 2.58144 2.81829 3.43731 3.61931 3.70655 3.77315 3.83122 4.03664 4.13097 4.13649 4.22907 4.28133 4.31997 4.42114 4.42582 4.44902 4.47030 4.53863 4.60076 4.70308 4.73994 4.86968 4.95844 5.01541 5.13653 5.18927 5.24645 5.27028 5.30286 5.31404 5.34397 5.46632 5.53160 5.56539 5.60424 5.69155 6.29588 6.37724 6.54562 7.18366 7.36324 8.09669 8.34321 9.33693 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.010119 B = 0.004126 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.358933 B = 6784.431416 C = 8938.029069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.337 6.337 3 C 0.112 3.888 4 C -0.176 4.176 5 C -0.081 4.081 6 C -0.123 4.123 7 C -0.108 4.108 8 C 0.553 3.447 9 O -0.583 6.583 10 N -0.694 5.694 11 C 0.146 3.854 12 H 0.052 0.948 13 C -0.115 4.115 14 C -0.110 4.110 15 C -0.109 4.109 16 C -0.128 4.128 17 C 0.173 3.827 18 H 0.062 0.938 19 N -0.733 5.733 20 C -0.229 4.229 21 H 0.081 0.919 22 C -0.074 4.074 23 N -0.971 5.971 24 Si 0.968 3.032 25 H -0.262 1.262 26 H -0.302 1.302 27 H -0.296 1.296 28 C -0.119 4.119 29 H 0.067 0.933 30 H 0.118 0.882 31 H 0.072 0.928 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.139 0.861 35 H 0.409 0.591 36 H 0.081 0.919 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.052 0.948 43 H 0.039 0.961 44 H 0.368 0.632 45 H 0.247 0.753 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.077 -3.724 15.622 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.251 6.251 3 C 0.066 3.934 4 C -0.194 4.194 5 C -0.099 4.099 6 C -0.142 4.142 7 C -0.112 4.112 8 C 0.341 3.659 9 O -0.465 6.465 10 N -0.343 5.343 11 C 0.041 3.959 12 H 0.070 0.930 13 C -0.154 4.154 14 C -0.148 4.148 15 C -0.147 4.147 16 C -0.169 4.169 17 C 0.064 3.936 18 H 0.079 0.921 19 N -0.371 5.371 20 C -0.361 4.361 21 H 0.099 0.901 22 C -0.266 4.266 23 N -0.622 5.622 24 Si 0.798 3.202 25 H -0.186 1.186 26 H -0.229 1.229 27 H -0.223 1.223 28 C -0.139 4.139 29 H 0.085 0.915 30 H 0.136 0.864 31 H 0.091 0.909 32 H 0.184 0.816 33 H 0.184 0.816 34 H 0.157 0.843 35 H 0.246 0.754 36 H 0.100 0.900 37 H 0.074 0.926 38 H 0.106 0.894 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.199 0.801 45 H 0.056 0.944 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.529 -4.398 15.615 18.814 hybrid contribution -0.382 0.614 -1.443 1.614 sum -9.911 -3.784 14.172 17.703 Atomic orbital electron populations 1.23421 0.75919 1.05810 1.02670 1.86075 1.23935 1.26382 1.88740 1.18895 0.91395 0.85625 0.97440 1.21785 1.01797 0.91296 1.04547 1.21296 0.93598 0.98689 0.96302 1.21482 0.95146 0.97245 1.00336 1.19668 0.92042 0.94524 1.04925 1.18559 0.88132 0.83486 0.75680 1.90702 1.67060 1.36216 1.52492 1.45789 1.07835 1.07898 1.72811 1.21241 0.79080 0.98144 0.97440 0.92959 1.21817 0.97015 1.02181 0.94398 1.21482 0.93856 0.97603 1.01896 1.21517 1.00984 0.97713 0.94513 1.22087 0.96669 1.00803 0.97348 1.20661 0.93284 0.94175 0.85434 0.92055 1.42615 1.78408 1.04969 1.11155 1.19627 1.34398 0.86440 0.95631 0.90081 1.25490 1.03359 0.99795 0.97937 1.69858 1.53516 1.28013 1.10771 0.85148 0.76591 0.80306 0.78153 1.18638 1.22944 1.22312 1.20406 0.92566 0.97553 1.03356 0.91474 0.86366 0.90907 0.81604 0.81648 0.84336 0.75437 0.90037 0.92626 0.89353 0.92936 0.90761 0.90794 0.92933 0.94203 0.80136 0.94393 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.34 -7.94 10.49 -92.51 -0.97 -8.91 16 3 C 0.11 2.90 6.68 22.47 0.15 3.05 16 4 C -0.18 -3.50 9.03 22.42 0.20 -3.29 16 5 C -0.08 -1.67 10.03 22.22 0.22 -1.44 16 6 C -0.12 -3.26 9.54 22.54 0.21 -3.04 16 7 C -0.11 -3.55 5.87 -20.10 -0.12 -3.67 16 8 C 0.55 20.98 7.74 86.79 0.67 21.66 16 9 O -0.58 -25.91 16.01 -3.88 -0.06 -25.97 16 10 N -0.69 -24.10 4.86 -445.39 -2.16 -26.27 16 11 C 0.15 5.14 1.98 44.99 0.09 5.23 16 12 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 13 C -0.12 -3.19 5.50 30.60 0.17 -3.03 16 14 C -0.11 -2.66 5.92 30.60 0.18 -2.48 16 15 C -0.11 -2.70 5.92 30.59 0.18 -2.52 16 16 C -0.13 -4.37 5.50 30.58 0.17 -4.21 16 17 C 0.17 6.48 2.29 44.98 0.10 6.58 16 18 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 19 N -0.73 -35.60 4.95 -323.01 -1.60 -37.20 16 20 C -0.23 -12.07 9.93 84.03 0.83 -11.23 16 21 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 22 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 23 N -0.97 -59.36 13.06 21.65 0.28 -59.08 16 24 Si 0.97 45.08 29.55 68.60 2.03 47.10 16 25 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 26 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 27 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 28 C -0.12 -3.83 9.53 22.63 0.22 -3.61 16 29 H 0.07 0.69 7.66 -2.39 -0.02 0.68 16 30 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 32 H 0.17 2.03 6.28 -2.91 -0.02 2.01 16 33 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 34 H 0.14 3.36 6.40 -2.91 -0.02 3.34 16 35 H 0.41 12.99 6.63 -92.71 -0.61 12.38 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.37 20.35 7.80 -92.70 -0.72 19.63 16 45 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 46 H 0.12 4.26 7.65 -2.91 -0.02 4.24 16 Total: -1.00 -72.39 374.22 2.03 -70.36 By element: Atomic # 1 Polarization: 44.67 SS G_CDS: -0.34 Total: 44.33 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: 4.86 Total: -4.36 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -3.48 Total: -122.55 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -1.03 Total: -34.88 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -72.39 2.03 -70.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085404162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.651 kcal (2) G-P(sol) polarization free energy of solvation -72.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds