Wall clock time and date at job start Tue Mar 31 2020 12:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00033 * 2 1 4 4 C 1.50702 * 109.47134 * 179.97438 * 3 2 1 5 5 C 1.37983 * 120.07367 * 0.02562 * 4 3 2 6 6 C 1.38330 * 120.14376 * 180.02562 * 5 4 3 7 7 C 1.38379 * 120.29679 * 359.97398 * 6 5 4 8 8 C 1.37935 * 120.14363 * 359.74349 * 7 6 5 9 9 C 1.39556 * 120.07455 * 179.97438 * 4 3 2 10 10 C 1.47851 * 120.14297 * 359.97438 * 9 4 3 11 11 O 1.21553 * 119.99629 * 0.02562 * 10 9 4 12 12 N 1.34772 * 119.99604 * 179.97438 * 10 9 4 13 13 C 1.46505 * 119.99813 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47283 * 180.02562 * 13 12 10 15 15 H 1.08999 * 112.84933 * 316.19853 * 14 13 12 16 16 C 1.53781 * 113.69221 * 87.46423 * 14 13 12 17 17 C 1.54049 * 87.08031 * 139.98770 * 16 14 13 18 18 H 1.08992 * 113.69868 * 220.05225 * 17 16 14 19 19 N 1.46506 * 113.61276 * 89.07129 * 17 16 14 20 20 C 1.36931 * 119.99757 * 107.62016 * 19 17 16 21 21 H 1.08000 * 120.00368 * 0.02562 * 20 19 17 22 22 C 1.38817 * 119.99913 * 180.02562 * 20 19 17 23 23 N 1.31620 * 119.99934 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99939 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46928 * 60.00113 * 24 22 20 26 26 H 1.48497 * 109.46892 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47090 * 299.99867 * 24 22 20 28 28 C 1.53781 * 113.61503 * 185.00012 * 14 13 12 29 29 H 1.08997 * 109.46976 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47091 * 300.00465 * 1 2 3 31 31 H 1.08998 * 109.46731 * 60.00167 * 1 2 3 32 32 H 1.09001 * 109.47528 * 59.99681 * 3 2 1 33 33 H 1.09007 * 109.46831 * 299.99716 * 3 2 1 34 34 H 1.08002 * 119.92408 * 359.96946 * 5 4 3 35 35 H 1.08004 * 119.85532 * 179.97438 * 6 5 4 36 36 H 1.07995 * 119.93174 * 179.97438 * 7 6 5 37 37 H 1.08002 * 120.07976 * 180.27918 * 8 7 6 38 38 H 0.97001 * 120.00396 * 0.02562 * 12 10 9 39 39 H 1.09000 * 109.47315 * 59.99868 * 13 12 10 40 40 H 1.09001 * 109.46863 * 300.00267 * 13 12 10 41 41 H 1.09005 * 113.61471 * 254.54353 * 16 14 13 42 42 H 1.08996 * 113.61178 * 25.35695 * 16 14 13 43 43 H 0.97002 * 119.99888 * 287.62233 * 19 17 16 44 44 H 0.96998 * 119.99784 * 180.02562 * 23 22 20 45 45 H 1.09002 * 113.61445 * 334.48413 * 28 14 13 46 46 H 1.09002 * 113.61408 * 105.30144 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.1076 -0.0585 0.0006 6 6 5.4864 -0.1694 0.0017 7 6 6.2780 0.9655 0.0023 8 6 5.6960 2.2160 -0.0035 9 6 4.3051 2.3351 0.0002 10 6 3.6743 3.6723 -0.0014 11 8 2.4629 3.7728 -0.0020 12 7 4.4425 4.7797 -0.0013 13 6 3.8175 6.1047 -0.0024 14 6 4.9046 7.1814 -0.0027 15 1 5.7152 6.9645 0.6930 16 6 5.3880 7.5710 -1.4095 17 6 5.4197 9.0277 -0.9094 18 1 5.0607 9.7504 -1.6421 19 7 6.6981 9.4136 -0.3068 20 6 7.5409 10.2621 -0.9738 21 1 7.2631 10.6472 -1.9438 22 6 8.7525 10.6274 -0.4031 23 7 9.0909 10.1585 0.7793 24 14 9.9019 11.7854 -1.3126 25 1 9.2135 13.0793 -1.5517 26 1 11.1198 12.0170 -0.4951 27 1 10.2859 11.1811 -2.6135 28 6 4.3545 8.6122 0.1191 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.4953 -0.9483 0.0006 35 1 5.9472 -1.1462 0.0021 36 1 7.3539 0.8721 0.0036 37 1 6.3148 3.1012 -0.0075 38 1 5.4092 4.6994 -0.0005 39 1 3.1971 6.2146 0.8870 40 1 3.1985 6.2137 -0.8929 41 1 6.3718 7.1734 -1.6589 42 1 4.6488 7.3921 -2.1903 43 1 6.9475 9.0680 0.5646 44 1 9.9373 10.4140 1.1782 45 1 3.3322 8.7193 -0.2436 46 1 4.5026 9.0547 1.1042 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086416300.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:37 Heat of formation + Delta-G solvation = -25.179589 kcal Electronic energy + Delta-G solvation = -25725.093182 eV Core-core repulsion = 22001.655682 eV Total energy + Delta-G solvation = -3723.437500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.59834 -39.03082 -38.22758 -37.69680 -34.83368 -33.29511 -32.18439 -31.55760 -30.10619 -27.81591 -27.21238 -25.53456 -25.08249 -24.08963 -23.46925 -22.02419 -21.33207 -20.61258 -18.58449 -17.93804 -17.26297 -16.65890 -16.36305 -16.16216 -16.00658 -15.37672 -15.11024 -14.88613 -14.84745 -14.50247 -14.17842 -14.00285 -13.57267 -13.35522 -12.98390 -12.91234 -12.87707 -12.35943 -12.28204 -11.98961 -11.95111 -11.60179 -11.41734 -11.34537 -11.06549 -10.85198 -10.51827 -10.23275 -10.10543 -10.06871 -9.78701 -9.71852 -9.50070 -9.29968 -9.07185 -8.91671 -8.84363 -7.03337 -5.83576 -3.12721 0.61730 1.08915 2.74880 3.11117 3.40450 3.44242 3.45090 3.45892 3.61215 4.49571 4.53091 4.54867 4.66571 4.77901 5.01053 5.02377 5.06154 5.09992 5.15256 5.23260 5.25382 5.37549 5.40454 5.42177 5.43135 5.55765 5.58842 5.67057 5.74675 5.83118 5.91569 6.01186 6.06689 6.15180 6.18301 6.20819 6.34182 6.36683 6.55677 6.61098 6.71132 6.86213 6.93387 7.00945 7.44145 7.65833 8.10519 8.35576 9.46216 10.03517 10.37763 11.38720 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.020871 B = 0.002297 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.277135 B =12188.117586 C =13237.791589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.399 6.399 3 C 0.107 3.893 4 C -0.030 4.030 5 C -0.110 4.110 6 C -0.096 4.096 7 C -0.128 4.128 8 C -0.083 4.083 9 C -0.134 4.134 10 C 0.554 3.446 11 O -0.544 6.544 12 N -0.717 5.717 13 C 0.131 3.869 14 C -0.121 4.121 15 H 0.093 0.907 16 C -0.169 4.169 17 C 0.168 3.832 18 H 0.063 0.937 19 N -0.705 5.705 20 C -0.243 4.243 21 H 0.072 0.928 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.909 3.091 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C -0.147 4.147 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.138 0.862 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.402 0.598 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.077 0.923 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.371 -21.339 -0.866 24.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.319 6.319 3 C 0.031 3.969 4 C -0.031 4.031 5 C -0.128 4.128 6 C -0.114 4.114 7 C -0.146 4.146 8 C -0.102 4.102 9 C -0.137 4.137 10 C 0.342 3.658 11 O -0.424 6.424 12 N -0.368 5.368 13 C 0.008 3.992 14 C -0.139 4.139 15 H 0.111 0.889 16 C -0.210 4.210 17 C 0.055 3.945 18 H 0.081 0.919 19 N -0.344 5.344 20 C -0.374 4.374 21 H 0.090 0.910 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.740 3.260 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 C -0.187 4.187 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.156 0.844 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.238 0.762 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.000 -21.230 -0.963 24.913 hybrid contribution 1.167 0.650 -0.133 1.343 sum -11.833 -20.579 -1.095 23.764 Atomic orbital electron populations 1.22695 0.80615 1.02499 1.00313 1.87749 1.19980 1.28467 1.95669 1.21425 0.89101 0.83603 1.02728 1.19760 0.94567 0.92429 0.96386 1.21008 0.94581 0.97444 0.99777 1.21405 0.93742 0.98891 0.97343 1.21152 1.00402 0.92155 1.00937 1.21318 0.93159 0.98435 0.97251 1.19741 0.93831 0.92709 1.07407 1.18273 0.86715 0.84240 0.76579 1.90728 1.13737 1.87297 1.50597 1.45999 1.10484 1.06022 1.74271 1.21516 0.95708 0.80075 1.01867 1.22716 0.97533 0.93796 0.99892 0.88887 1.23943 1.00626 1.01990 0.94438 1.21098 0.86984 0.92670 0.93725 0.91918 1.42160 1.15966 1.54905 1.21345 1.19245 0.97690 1.19775 1.00731 0.91038 1.24769 0.98232 1.00879 0.96986 1.69648 1.23709 1.48331 1.16374 0.86239 0.80313 0.80776 0.78680 1.21190 1.21678 1.21210 1.23443 0.99307 0.94473 1.01484 0.89688 0.93952 0.93945 0.90576 0.90559 0.84403 0.85463 0.85208 0.85180 0.76228 0.91648 0.91405 0.91525 0.91391 0.78113 0.93376 0.90454 0.91315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 11.01 101.05 1.11 1.39 16 2 O -0.40 -4.32 9.18 -35.23 -0.32 -4.65 16 3 C 0.11 1.26 4.58 36.01 0.16 1.43 16 4 C -0.03 -0.36 5.91 -104.22 -0.62 -0.97 16 5 C -0.11 -1.11 9.37 -39.64 -0.37 -1.48 16 6 C -0.10 -0.81 10.04 -39.50 -0.40 -1.21 16 7 C -0.13 -1.11 10.03 -39.64 -0.40 -1.50 16 8 C -0.08 -0.82 9.54 -39.18 -0.37 -1.19 16 9 C -0.13 -1.58 5.87 -104.96 -0.62 -2.20 16 10 C 0.55 7.43 7.75 -12.33 -0.10 7.33 16 11 O -0.54 -8.51 13.41 5.32 0.07 -8.44 16 12 N -0.72 -8.80 5.51 -61.25 -0.34 -9.14 16 13 C 0.13 1.72 5.51 -4.04 -0.02 1.69 16 14 C -0.12 -1.75 3.63 -89.81 -0.33 -2.08 16 15 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 16 C -0.17 -2.74 7.44 -25.78 -0.19 -2.93 16 17 C 0.17 3.20 4.58 -66.97 -0.31 2.89 16 18 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 19 N -0.71 -17.07 5.31 -52.50 -0.28 -17.35 16 20 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.49 13.06 55.49 0.72 -26.76 16 24 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 C -0.15 -2.30 7.38 -25.92 -0.19 -2.49 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.96 7.35 -51.93 -0.38 0.58 16 33 H 0.08 0.96 7.34 -51.93 -0.38 0.58 16 34 H 0.14 1.28 7.00 -52.49 -0.37 0.91 16 35 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 1.07 6.41 -52.49 -0.34 0.74 16 38 H 0.40 4.31 6.51 -40.82 -0.27 4.04 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.91 7.85 -51.93 -0.41 0.51 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 43 H 0.38 9.84 7.90 -40.82 -0.32 9.52 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 46 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 379.16 15.07 5.71 5.71 Total: -1.00 -31.37 379.16 -9.39 -40.76 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -7.06 Total: 11.43 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -2.87 Total: -8.51 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.11 Total: -53.25 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.25 Total: -13.09 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.37 -9.39 -40.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086416300.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.581 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds