Wall clock time and date at job start Tue Mar 31 2020 12:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00268 * 2 1 4 4 C 1.50701 * 109.46934 * 179.97438 * 3 2 1 5 5 C 1.38390 * 119.92877 * 89.99958 * 4 3 2 6 6 C 1.38334 * 120.29393 * 179.97438 * 5 4 3 7 7 C 1.37983 * 120.14398 * 0.02562 * 6 5 4 8 8 C 1.39550 * 119.85250 * 359.97438 * 7 6 5 9 9 C 1.47850 * 120.14380 * 179.97438 * 8 7 6 10 10 O 1.21553 * 120.00185 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99831 * 359.71992 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27510 * 11 9 8 13 13 C 1.52997 * 109.47551 * 180.02562 * 12 11 9 14 14 H 1.09004 * 112.84670 * 316.19794 * 13 12 11 15 15 C 1.53779 * 113.61540 * 87.50157 * 13 12 11 16 16 C 1.53778 * 87.07836 * 139.98590 * 15 13 12 17 17 H 1.09008 * 113.68856 * 220.00895 * 16 15 13 18 18 N 1.46505 * 113.61757 * 89.11657 * 16 15 13 19 19 C 1.36938 * 119.99619 * 107.50184 * 18 16 15 20 20 H 1.07995 * 120.00403 * 359.97438 * 19 18 16 21 21 C 1.38819 * 119.99789 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99610 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99976 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47095 * 90.00172 * 23 21 19 25 25 H 1.48503 * 109.46919 * 209.99757 * 23 21 19 26 26 H 1.48493 * 109.47359 * 329.99960 * 23 21 19 27 27 C 1.53774 * 113.61833 * 185.00495 * 13 12 11 28 28 C 1.37940 * 119.93103 * 270.25417 * 4 3 2 29 29 H 1.09006 * 109.46533 * 60.00100 * 1 2 3 30 30 H 1.08996 * 109.47396 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46768 * 300.00834 * 1 2 3 32 32 H 1.08994 * 109.47605 * 59.99997 * 3 2 1 33 33 H 1.09002 * 109.46983 * 299.99282 * 3 2 1 34 34 H 1.08003 * 119.84885 * 359.97438 * 5 4 3 35 35 H 1.07998 * 119.92580 * 180.02562 * 6 5 4 36 36 H 1.08003 * 120.07170 * 179.97438 * 7 6 5 37 37 H 0.97001 * 119.99727 * 0.28406 * 11 9 8 38 38 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 39 39 H 1.08997 * 109.46691 * 60.00285 * 12 11 9 40 40 H 1.09001 * 113.61238 * 254.52884 * 15 13 12 41 41 H 1.08995 * 113.61251 * 25.43794 * 15 13 12 42 42 H 0.96996 * 120.00019 * 287.50136 * 18 16 15 43 43 H 0.96997 * 119.99776 * 180.02562 * 22 21 19 44 44 H 1.08998 * 113.61419 * 334.56408 * 27 13 12 45 45 H 1.08996 * 113.62196 * 105.46526 * 27 13 12 46 46 H 1.08000 * 120.06916 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2014 1.1315 -1.1984 6 6 5.5804 1.0227 -1.2067 7 6 6.2782 0.9675 -0.0176 8 6 5.5898 1.0223 1.1951 9 6 6.3310 0.9632 2.4730 10 8 5.7287 1.0106 3.5277 11 7 7.6740 0.8504 2.4684 12 6 8.4081 0.7858 3.7346 13 6 9.9062 0.6613 3.4499 14 1 10.1284 -0.0529 2.6570 15 6 10.6152 2.0151 3.2787 16 6 11.7852 1.4140 4.0753 17 1 12.2360 2.1095 4.7833 18 7 12.7758 0.7319 3.2387 19 6 14.0027 1.3024 3.0275 20 1 14.2399 2.2551 3.4771 21 6 14.9411 0.6563 2.2344 22 7 14.6518 -0.5047 1.6859 23 14 16.6144 1.4347 1.9455 24 1 17.5590 0.9825 2.9984 25 1 17.1266 1.0268 0.6127 26 1 16.4879 2.9133 1.9960 27 6 10.7591 0.4634 4.7140 28 6 4.1978 1.1268 1.1963 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8899 32 1 1.6887 1.8464 0.8899 33 1 1.6888 1.8463 -0.8901 34 1 3.6598 1.1738 -2.1319 35 1 6.1119 0.9808 -2.1458 36 1 7.3549 0.8822 -0.0254 37 1 8.1546 0.8123 1.6267 38 1 8.2219 1.6930 4.3092 39 1 8.0730 -0.0806 4.3048 40 1 10.8659 2.2488 2.2440 41 1 10.1154 2.8375 3.7904 42 1 12.5626 -0.1236 2.8346 43 1 15.3076 -0.9563 1.1321 44 1 10.2987 0.8616 5.6182 45 1 11.1259 -0.5554 4.8383 46 1 3.6587 1.1651 2.1314 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086420261.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:39 Heat of formation + Delta-G solvation = -26.951719 kcal Electronic energy + Delta-G solvation = -25194.524596 eV Core-core repulsion = 21471.010251 eV Total energy + Delta-G solvation = -3723.514345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.43499 -39.16725 -38.42522 -37.67449 -34.74899 -33.30661 -32.43401 -31.44123 -30.13872 -27.87879 -27.26768 -25.67416 -25.07305 -24.20571 -23.38056 -22.12553 -21.66902 -20.32842 -18.51599 -17.92253 -17.24170 -16.80052 -16.57597 -16.30373 -15.87402 -15.69343 -15.35251 -14.92361 -14.72363 -14.39815 -14.14394 -14.03391 -13.64978 -13.40393 -12.97410 -12.90044 -12.76221 -12.68696 -12.26634 -11.96738 -11.92864 -11.78498 -11.40685 -11.33720 -11.05089 -10.86492 -10.50366 -10.22013 -10.16878 -10.12234 -9.82464 -9.70808 -9.48548 -9.28928 -9.23896 -8.96333 -8.89179 -7.01983 -5.82660 -3.11662 0.58735 0.98095 2.67277 3.12222 3.39478 3.40582 3.46046 3.47455 3.80367 4.40553 4.42558 4.53927 4.54338 4.75741 4.79950 4.89761 4.92639 4.95467 5.03015 5.04571 5.10030 5.20692 5.26694 5.27881 5.43635 5.48706 5.61197 5.66051 5.70035 5.85663 5.94072 6.01807 6.05400 6.09843 6.16533 6.20539 6.36212 6.38792 6.54124 6.58295 6.69902 6.72994 6.88646 7.02734 7.48090 7.67379 8.16107 8.36548 9.47265 10.04789 10.39059 11.39745 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023193 B = 0.002034 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.991166 B =13761.006986 C =14594.899671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.103 3.897 4 C -0.104 4.104 5 C -0.075 4.075 6 C -0.128 4.128 7 C -0.077 4.077 8 C -0.134 4.134 9 C 0.555 3.445 10 O -0.543 6.543 11 N -0.718 5.718 12 C 0.131 3.869 13 C -0.120 4.120 14 H 0.093 0.907 15 C -0.168 4.168 16 C 0.167 3.833 17 H 0.063 0.937 18 N -0.706 5.706 19 C -0.243 4.243 20 H 0.072 0.928 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.909 3.091 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C -0.148 4.148 28 C -0.039 4.039 29 H 0.041 0.959 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.131 0.869 37 H 0.402 0.598 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.269 3.523 -5.239 27.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.027 3.973 4 C -0.105 4.105 5 C -0.093 4.093 6 C -0.146 4.146 7 C -0.096 4.096 8 C -0.138 4.138 9 C 0.342 3.658 10 O -0.421 6.421 11 N -0.369 5.369 12 C 0.008 3.992 13 C -0.139 4.139 14 H 0.111 0.889 15 C -0.209 4.209 16 C 0.055 3.945 17 H 0.081 0.919 18 N -0.344 5.344 19 C -0.374 4.374 20 H 0.090 0.910 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.187 4.187 28 C -0.058 4.058 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.145 0.855 35 H 0.151 0.849 36 H 0.149 0.851 37 H 0.237 0.763 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -26.363 3.482 -4.476 26.966 hybrid contribution 0.870 0.250 -0.875 1.259 sum -25.492 3.732 -5.351 26.314 Atomic orbital electron populations 1.22775 0.80815 1.03002 1.00049 1.87988 1.19744 1.27289 1.95415 1.21335 0.89486 0.85268 1.01193 1.19524 0.94295 1.03362 0.93272 1.21249 0.94378 0.96157 0.97539 1.21124 0.94122 1.01050 0.98302 1.21449 1.00207 0.96169 0.91784 1.19985 0.94323 1.06245 0.93199 1.18246 0.82255 0.76599 0.88673 1.90759 1.68446 1.50401 1.32542 1.45998 1.06311 1.73946 1.10651 1.21520 0.91030 1.01822 0.84853 1.22718 0.91006 1.00036 1.00131 0.88878 1.23891 0.99900 0.94861 1.02284 1.21061 0.88070 0.93275 0.92134 0.91938 1.42168 1.11930 1.23447 1.56865 1.19297 0.90358 1.02771 1.24941 0.90983 1.24765 0.98677 0.97094 1.00348 1.69661 1.35110 1.15941 1.37336 0.86166 0.84215 0.78443 0.77218 1.21657 1.21771 1.20716 1.23441 0.97797 1.01540 0.95945 1.21137 0.92698 0.93742 0.98244 0.94004 0.89436 0.93882 0.92097 0.92171 0.85489 0.84945 0.85146 0.76274 0.91403 0.91642 0.91511 0.91371 0.78116 0.93444 0.90428 0.91291 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.64 10.69 -35.23 -0.38 -4.01 16 3 C 0.10 0.81 6.06 36.01 0.22 1.03 16 4 C -0.10 -1.00 5.50 -104.67 -0.58 -1.57 16 5 C -0.07 -0.63 9.69 -39.49 -0.38 -1.01 16 6 C -0.13 -1.08 10.03 -39.64 -0.40 -1.47 16 7 C -0.08 -0.75 9.54 -39.19 -0.37 -1.13 16 8 C -0.13 -1.60 5.87 -104.97 -0.62 -2.21 16 9 C 0.56 7.81 7.77 -12.33 -0.10 7.72 16 10 O -0.54 -9.37 16.35 5.32 0.09 -9.29 16 11 N -0.72 -9.13 5.51 -61.25 -0.34 -9.46 16 12 C 0.13 1.77 5.51 -4.04 -0.02 1.75 16 13 C -0.12 -1.78 3.63 -89.81 -0.33 -2.10 16 14 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 15 C -0.17 -2.76 7.43 -25.92 -0.19 -2.95 16 16 C 0.17 3.21 4.56 -67.12 -0.31 2.91 16 17 H 0.06 1.21 8.10 -51.92 -0.42 0.79 16 18 N -0.71 -17.16 5.31 -52.63 -0.28 -17.44 16 19 C -0.24 -6.60 9.97 -15.06 -0.15 -6.75 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 23 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C -0.15 -2.34 7.39 -25.92 -0.19 -2.53 16 28 C -0.04 -0.44 9.24 -39.19 -0.36 -0.81 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 34 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 35 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.13 1.06 6.41 -52.48 -0.34 0.72 16 37 H 0.40 4.38 6.51 -40.82 -0.27 4.12 16 38 H 0.07 0.95 7.84 -51.93 -0.41 0.54 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 42 H 0.38 9.89 7.90 -40.82 -0.32 9.57 16 43 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 44 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 45 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.14 1.58 7.65 -52.49 -0.40 1.18 16 LS Contribution 386.32 15.07 5.82 5.82 Total: -1.00 -32.83 386.32 -9.32 -42.14 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -7.17 Total: 10.39 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -2.76 Total: -8.30 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 0.11 Total: -53.75 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.29 Total: -13.30 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.83 -9.32 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086420261.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.192 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds