Wall clock time and date at job start Tue Mar 31 2020 12:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00268 * 2 1 4 4 C 1.50701 * 109.46934 * 179.97438 * 3 2 1 5 5 C 1.38390 * 119.92877 * 89.99958 * 4 3 2 6 6 C 1.38334 * 120.29393 * 179.97438 * 5 4 3 7 7 C 1.37983 * 120.14398 * 0.02562 * 6 5 4 8 8 C 1.39550 * 119.85250 * 359.97438 * 7 6 5 9 9 C 1.47850 * 120.14380 * 179.97438 * 8 7 6 10 10 O 1.21553 * 120.00185 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99831 * 359.71992 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27510 * 11 9 8 13 13 C 1.52997 * 109.47551 * 180.02562 * 12 11 9 14 14 H 1.09004 * 112.84670 * 316.19794 * 13 12 11 15 15 C 1.53779 * 113.61540 * 87.50157 * 13 12 11 16 16 C 1.53778 * 87.07836 * 139.98590 * 15 13 12 17 17 H 1.09008 * 113.68856 * 220.00895 * 16 15 13 18 18 N 1.46505 * 113.61757 * 89.11657 * 16 15 13 19 19 C 1.36938 * 119.99619 * 107.50184 * 18 16 15 20 20 H 1.07995 * 120.00403 * 359.97438 * 19 18 16 21 21 C 1.38819 * 119.99789 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99610 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 119.99976 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47095 * 90.00172 * 23 21 19 25 25 H 1.48503 * 109.46919 * 209.99757 * 23 21 19 26 26 H 1.48493 * 109.47359 * 329.99960 * 23 21 19 27 27 C 1.53774 * 113.61833 * 185.00495 * 13 12 11 28 28 C 1.37940 * 119.93103 * 270.25417 * 4 3 2 29 29 H 1.09006 * 109.46533 * 60.00100 * 1 2 3 30 30 H 1.08996 * 109.47396 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46768 * 300.00834 * 1 2 3 32 32 H 1.08994 * 109.47605 * 59.99997 * 3 2 1 33 33 H 1.09002 * 109.46983 * 299.99282 * 3 2 1 34 34 H 1.08003 * 119.84885 * 359.97438 * 5 4 3 35 35 H 1.07998 * 119.92580 * 180.02562 * 6 5 4 36 36 H 1.08003 * 120.07170 * 179.97438 * 7 6 5 37 37 H 0.97001 * 119.99727 * 0.28406 * 11 9 8 38 38 H 1.08998 * 109.47134 * 300.00670 * 12 11 9 39 39 H 1.08997 * 109.46691 * 60.00285 * 12 11 9 40 40 H 1.09001 * 113.61238 * 254.52884 * 15 13 12 41 41 H 1.08995 * 113.61251 * 25.43794 * 15 13 12 42 42 H 0.96996 * 120.00019 * 287.50136 * 18 16 15 43 43 H 0.96997 * 119.99776 * 180.02562 * 22 21 19 44 44 H 1.08998 * 113.61419 * 334.56408 * 27 13 12 45 45 H 1.08996 * 113.62196 * 105.46526 * 27 13 12 46 46 H 1.08000 * 120.06916 * 0.02562 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 6 4.2014 1.1315 -1.1984 6 6 5.5804 1.0227 -1.2067 7 6 6.2782 0.9675 -0.0176 8 6 5.5898 1.0223 1.1951 9 6 6.3310 0.9632 2.4730 10 8 5.7287 1.0106 3.5277 11 7 7.6740 0.8504 2.4684 12 6 8.4081 0.7858 3.7346 13 6 9.9062 0.6613 3.4499 14 1 10.1284 -0.0529 2.6570 15 6 10.6152 2.0151 3.2787 16 6 11.7852 1.4140 4.0753 17 1 12.2360 2.1095 4.7833 18 7 12.7758 0.7319 3.2387 19 6 14.0027 1.3024 3.0275 20 1 14.2399 2.2551 3.4771 21 6 14.9411 0.6563 2.2344 22 7 14.6518 -0.5047 1.6859 23 14 16.6144 1.4347 1.9455 24 1 17.5590 0.9825 2.9984 25 1 17.1266 1.0268 0.6127 26 1 16.4879 2.9133 1.9960 27 6 10.7591 0.4634 4.7140 28 6 4.1978 1.1268 1.1963 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5140 0.8899 32 1 1.6887 1.8464 0.8899 33 1 1.6888 1.8463 -0.8901 34 1 3.6598 1.1738 -2.1319 35 1 6.1119 0.9808 -2.1458 36 1 7.3549 0.8822 -0.0254 37 1 8.1546 0.8123 1.6267 38 1 8.2219 1.6930 4.3092 39 1 8.0730 -0.0806 4.3048 40 1 10.8659 2.2488 2.2440 41 1 10.1154 2.8375 3.7904 42 1 12.5626 -0.1236 2.8346 43 1 15.3076 -0.9563 1.1321 44 1 10.2987 0.8616 5.6182 45 1 11.1259 -0.5554 4.8383 46 1 3.6587 1.1651 2.1314 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086420261.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:38 Heat of formation + Delta-G solvation = -48.192351 kcal Electronic energy + Delta-G solvation = -25195.445659 eV Core-core repulsion = 21471.010251 eV Total energy + Delta-G solvation = -3724.435408 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.38576 -40.24467 -39.54528 -38.36593 -36.08678 -35.03803 -33.23928 -32.28470 -31.90214 -28.91587 -28.08091 -26.43502 -26.25079 -25.82765 -24.67288 -23.01129 -22.82293 -21.33584 -19.85835 -19.36348 -18.74972 -17.48137 -17.36396 -17.06556 -16.77591 -16.61044 -16.47178 -16.37530 -15.80157 -15.63643 -15.44676 -15.00450 -14.78422 -14.69914 -14.60622 -13.84005 -13.65756 -13.47537 -13.27584 -13.17811 -12.93739 -12.90761 -12.65602 -12.62802 -12.35126 -12.14913 -12.07461 -11.98820 -11.57998 -11.47762 -11.13021 -10.91346 -10.77289 -10.66665 -10.24994 -9.96453 -9.88372 -8.99159 -7.94686 -5.22807 -0.20770 0.25009 1.48859 1.49879 1.58299 1.76119 2.10017 2.56466 2.65215 3.15567 3.37897 3.58480 3.71919 3.75281 3.79026 3.86964 3.89333 4.07441 4.14481 4.21530 4.28073 4.32451 4.38995 4.40122 4.52947 4.56756 4.59544 4.71954 4.74993 4.82209 4.87460 4.93402 4.95684 4.99335 5.11244 5.23724 5.27011 5.34941 5.35767 5.46086 5.47314 5.54384 5.66198 5.84647 6.18566 6.28959 6.45661 7.10689 7.34148 8.11213 8.33741 9.28484 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023193 B = 0.002034 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.991166 B =13761.006986 C =14594.899671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.102 3.898 4 C -0.111 4.111 5 C -0.070 4.070 6 C -0.126 4.126 7 C -0.080 4.080 8 C -0.156 4.156 9 C 0.554 3.446 10 O -0.583 6.583 11 N -0.711 5.711 12 C 0.139 3.861 13 C -0.102 4.102 14 H 0.083 0.917 15 C -0.153 4.153 16 C 0.144 3.856 17 H 0.060 0.940 18 N -0.719 5.719 19 C -0.243 4.243 20 H 0.076 0.924 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.972 3.028 24 H -0.289 1.289 25 H -0.296 1.296 26 H -0.270 1.270 27 C -0.135 4.135 28 C -0.056 4.056 29 H 0.058 0.942 30 H 0.093 0.907 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.144 0.856 37 H 0.411 0.589 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.105 0.895 45 H 0.058 0.942 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.303 4.585 -6.350 28.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.026 3.974 4 C -0.111 4.111 5 C -0.088 4.088 6 C -0.144 4.144 7 C -0.099 4.099 8 C -0.159 4.159 9 C 0.343 3.657 10 O -0.464 6.464 11 N -0.362 5.362 12 C 0.016 3.984 13 C -0.121 4.121 14 H 0.101 0.899 15 C -0.193 4.193 16 C 0.033 3.967 17 H 0.078 0.922 18 N -0.357 5.357 19 C -0.375 4.375 20 H 0.094 0.906 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.802 3.198 24 H -0.216 1.216 25 H -0.223 1.223 26 H -0.195 1.195 27 C -0.174 4.174 28 C -0.075 4.075 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.173 0.827 35 H 0.178 0.822 36 H 0.161 0.839 37 H 0.248 0.752 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.069 0.931 41 H 0.109 0.891 42 H 0.207 0.793 43 H 0.060 0.940 44 H 0.123 0.877 45 H 0.077 0.923 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -27.418 4.582 -5.572 28.351 hybrid contribution 1.095 -0.051 -0.514 1.211 sum -26.323 4.531 -6.086 27.395 Atomic orbital electron populations 1.22948 0.79210 1.03820 1.01168 1.87934 1.21624 1.28224 1.95659 1.21429 0.88391 0.85053 1.02534 1.19780 0.95428 1.02874 0.93033 1.21632 0.94615 0.94397 0.98138 1.21488 0.94366 0.99739 0.98809 1.21644 1.00962 0.95783 0.91500 1.19899 0.94519 1.08550 0.92886 1.18619 0.82397 0.75663 0.89070 1.90728 1.69192 1.52453 1.34067 1.45923 1.06088 1.73380 1.10846 1.21362 0.89934 1.01881 0.85248 1.22500 0.91667 0.98706 0.99248 0.89893 1.23713 0.98460 0.96209 1.00937 1.21387 0.88371 0.94418 0.92477 0.92162 1.42292 1.12284 1.23377 1.57771 1.19676 0.91387 1.02637 1.23756 0.90571 1.25537 1.02213 0.97874 1.01056 1.69809 1.36022 1.17428 1.38614 0.85155 0.80040 0.78121 0.76532 1.21577 1.22272 1.19469 1.23349 0.96515 1.00212 0.97306 1.21161 0.92747 0.94937 0.98646 0.92345 0.88872 0.93274 0.91809 0.89764 0.82696 0.82198 0.83871 0.75185 0.91188 0.91789 0.93150 0.89081 0.79334 0.94042 0.87660 0.92338 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -7.37 10.69 -148.98 -1.59 -8.97 16 3 C 0.10 1.45 6.06 71.24 0.43 1.88 16 4 C -0.11 -1.99 5.50 -19.90 -0.11 -2.10 16 5 C -0.07 -0.99 9.69 22.33 0.22 -0.77 16 6 C -0.13 -1.80 10.03 22.23 0.22 -1.58 16 7 C -0.08 -1.45 9.54 22.53 0.21 -1.23 16 8 C -0.16 -3.67 5.87 -20.09 -0.12 -3.79 16 9 C 0.55 15.65 7.77 86.79 0.67 16.33 16 10 O -0.58 -20.57 16.35 -3.88 -0.06 -20.64 16 11 N -0.71 -17.59 5.51 -465.98 -2.57 -20.15 16 12 C 0.14 3.61 5.51 86.38 0.48 4.08 16 13 C -0.10 -2.91 3.63 -10.27 -0.04 -2.95 16 14 H 0.08 2.57 8.14 -2.39 -0.02 2.56 16 15 C -0.15 -4.79 7.43 31.12 0.23 -4.56 16 16 C 0.14 5.41 4.56 45.51 0.21 5.62 16 17 H 0.06 2.28 8.10 -2.38 -0.02 2.26 16 18 N -0.72 -35.17 5.31 -320.43 -1.70 -36.87 16 19 C -0.24 -13.22 9.97 84.03 0.84 -12.39 16 20 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 21 C -0.07 -4.20 5.50 84.86 0.47 -3.74 16 22 N -0.97 -58.15 13.06 21.65 0.28 -57.86 16 23 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 25 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 C -0.13 -4.09 7.39 31.12 0.23 -3.86 16 28 C -0.06 -1.28 9.24 22.53 0.21 -1.07 16 29 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.06 0.84 8.08 -2.39 -0.02 0.82 16 33 H 0.08 0.77 8.09 -2.39 -0.02 0.75 16 34 H 0.16 1.31 8.06 -2.91 -0.02 1.28 16 35 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 36 H 0.14 2.10 6.41 -2.91 -0.02 2.08 16 37 H 0.41 8.56 6.51 -92.71 -0.60 7.96 16 38 H 0.07 1.83 7.84 -2.39 -0.02 1.81 16 39 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.09 2.47 7.89 -2.39 -0.02 2.45 16 42 H 0.37 19.60 7.90 -92.71 -0.73 18.87 16 43 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.11 2.64 8.10 -2.39 -0.02 2.62 16 45 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 46 H 0.12 3.02 7.65 -2.91 -0.02 3.00 16 Total: -1.00 -71.57 386.32 1.44 -70.13 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: -0.35 Total: 35.50 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 5.40 Total: -8.62 kcal Atomic # 7 Polarization: -110.90 SS G_CDS: -3.98 Total: -114.88 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -1.66 Total: -29.60 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -71.57 1.44 -70.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086420261.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.935 kcal (2) G-P(sol) polarization free energy of solvation -71.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds