Wall clock time and date at job start Tue Mar 31 2020 12:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35655 * 116.99962 * 2 1 4 4 C 1.38704 * 120.15373 * 359.97438 * 3 2 1 5 5 C 1.38053 * 120.08455 * 180.02562 * 4 3 2 6 6 C 1.38548 * 120.39153 * 359.74441 * 5 4 3 7 7 C 1.37782 * 120.30001 * 0.51341 * 6 5 4 8 8 C 1.39709 * 119.90703 * 359.48541 * 7 6 5 9 9 C 1.47536 * 120.19039 * 180.23021 * 8 7 6 10 10 O 1.21599 * 119.99836 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00250 * 0.02562 * 9 8 7 12 12 C 1.46502 * 119.99860 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46804 * 179.97438 * 12 11 9 14 14 H 1.09005 * 110.43419 * 307.53745 * 13 12 11 15 15 C 1.54891 * 110.48714 * 70.22277 * 13 12 11 16 16 C 1.54887 * 102.74832 * 156.62204 * 15 13 12 17 17 C 1.54264 * 104.19617 * 322.05573 * 16 15 13 18 18 H 1.08999 * 110.07650 * 142.91707 * 17 16 15 19 19 N 1.46497 * 110.03461 * 264.32652 * 17 16 15 20 20 C 1.36932 * 120.00051 * 272.16595 * 19 17 16 21 21 H 1.08000 * 120.00453 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99898 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00383 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00009 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46959 * 60.00153 * 24 22 20 26 26 H 1.48497 * 109.47338 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47366 * 300.00219 * 24 22 20 28 28 C 1.53885 * 106.59692 * 23.61257 * 17 16 15 29 29 H 1.08996 * 109.47467 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46782 * 299.99471 * 1 2 3 31 31 H 1.09004 * 109.47490 * 59.99227 * 1 2 3 32 32 H 1.07997 * 119.95609 * 0.04114 * 4 3 2 33 33 H 1.07999 * 119.80281 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.84791 * 180.25864 * 6 5 4 35 35 H 1.08002 * 120.04937 * 179.77127 * 7 6 5 36 36 H 0.96999 * 119.99664 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.46785 * 299.99154 * 12 11 9 38 38 H 1.08994 * 109.47517 * 59.99848 * 12 11 9 39 39 H 1.09001 * 110.75322 * 274.93684 * 15 13 12 40 40 H 1.08999 * 110.75524 * 38.30405 * 15 13 12 41 41 H 1.09003 * 110.48516 * 203.38228 * 16 15 13 42 42 H 1.09001 * 110.60191 * 80.78844 * 16 15 13 43 43 H 0.97008 * 120.00096 * 92.16574 * 19 17 16 44 44 H 0.96995 * 120.00309 * 180.02562 * 23 22 20 45 45 H 1.09002 * 110.02794 * 240.71543 * 28 17 16 46 46 H 1.09001 * 110.02941 * 119.28507 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2925 2.3740 -0.0005 5 6 1.9207 3.6033 -0.0011 6 6 3.3038 3.6836 0.0043 7 6 4.0668 2.5363 -0.0005 8 6 3.4441 1.2857 0.0001 9 6 4.2550 0.0531 0.0001 10 8 3.7094 -1.0336 0.0002 11 7 5.6005 0.1316 0.0001 12 6 6.4056 -1.0923 0.0007 13 6 7.8910 -0.7255 -0.0001 14 1 8.1110 -0.0307 -0.8107 15 6 8.3002 -0.1180 1.3646 16 6 9.8260 -0.3798 1.4116 17 6 9.9906 -1.7740 0.7722 18 1 10.9004 -1.8058 0.1729 19 7 10.0409 -2.8016 1.8151 20 6 11.2382 -3.1365 2.3891 21 1 12.1455 -2.6434 2.0727 22 6 11.2858 -4.1099 3.3776 23 7 10.1803 -4.7113 3.7629 24 14 12.9192 -4.5672 4.1601 25 1 13.5105 -3.3689 4.8078 26 1 12.7007 -5.6237 5.1806 27 1 13.8449 -5.0722 3.1145 28 6 8.7602 -1.9938 -0.1255 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 0.2139 2.3195 -0.0003 33 1 1.3305 4.5077 -0.0011 34 1 3.7861 4.6499 0.0080 35 1 5.1447 2.6037 -0.0001 36 1 6.0357 0.9985 -0.0003 37 1 6.1761 -1.6777 0.8911 38 1 6.1760 -1.6787 -0.8889 39 1 8.0907 0.9515 1.3896 40 1 7.7948 -0.6309 2.1829 41 1 10.1799 -0.3888 2.4426 42 1 10.3621 0.3715 0.8317 43 1 9.2261 -3.2448 2.0991 44 1 10.2135 -5.3911 4.4539 45 1 8.2006 -2.8651 0.2149 46 1 9.0730 -2.1314 -1.1605 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086860322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:38 Heat of formation + Delta-G solvation = -43.093107 kcal Electronic energy + Delta-G solvation = -25991.738937 eV Core-core repulsion = 22267.524648 eV Total energy + Delta-G solvation = -3724.214288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.77710 -39.20742 -37.99773 -37.53622 -34.79814 -33.26663 -31.83603 -30.51789 -30.43801 -28.88889 -27.65300 -27.16129 -24.78861 -23.48070 -23.08652 -22.26077 -20.64861 -19.88958 -19.15326 -18.62187 -17.31676 -17.04880 -16.64614 -16.08062 -15.79238 -15.33226 -15.19446 -15.00281 -14.73739 -14.62856 -13.92243 -13.79353 -13.51888 -13.28010 -13.18153 -12.79480 -12.60006 -12.54088 -12.09314 -11.95293 -11.50144 -11.44443 -11.36248 -11.16226 -10.76537 -10.68954 -10.54675 -10.43512 -10.20014 -10.17314 -9.95593 -9.70942 -9.57534 -9.42899 -8.94891 -8.83603 -8.53872 -6.89172 -5.71760 -3.00049 0.57535 1.04538 2.80622 2.97584 3.18723 3.46542 3.50945 3.52124 3.63562 4.36952 4.38245 4.62949 4.66147 4.72457 4.85281 4.90382 4.94441 4.99218 5.03831 5.14248 5.17309 5.23033 5.43111 5.59896 5.64040 5.76384 5.79856 5.83425 5.89325 5.97123 6.05458 6.07944 6.14469 6.19522 6.27812 6.31510 6.40146 6.50725 6.53241 6.70569 6.81187 6.96410 7.06868 7.15007 7.56147 7.74552 8.31423 8.47518 9.57852 10.18040 10.51925 11.50814 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023002 B = 0.002297 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.973946 B =12187.852615 C =12745.864322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.279 6.279 3 C 0.184 3.816 4 C -0.222 4.222 5 C -0.055 4.055 6 C -0.168 4.168 7 C -0.047 4.047 8 C -0.170 4.170 9 C 0.555 3.445 10 O -0.520 6.520 11 N -0.725 5.725 12 C 0.128 3.872 13 C -0.103 4.103 14 H 0.074 0.926 15 C -0.112 4.112 16 C -0.146 4.146 17 C 0.174 3.826 18 H 0.048 0.952 19 N -0.721 5.721 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.014 4.014 23 N -0.933 5.933 24 Si 0.906 3.094 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 C -0.121 4.121 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.134 0.866 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.396 0.604 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.073 0.927 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.761 19.323 -10.562 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.190 6.190 3 C 0.135 3.865 4 C -0.241 4.241 5 C -0.074 4.074 6 C -0.186 4.186 7 C -0.066 4.066 8 C -0.174 4.174 9 C 0.342 3.658 10 O -0.396 6.396 11 N -0.378 5.378 12 C 0.005 3.995 13 C -0.122 4.122 14 H 0.092 0.908 15 C -0.150 4.150 16 C -0.187 4.187 17 C 0.064 3.936 18 H 0.066 0.934 19 N -0.362 5.362 20 C -0.370 4.370 21 H 0.087 0.913 22 C -0.210 4.210 23 N -0.581 5.581 24 Si 0.737 3.263 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.213 1.213 28 C -0.160 4.160 29 H 0.121 0.879 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.152 0.848 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.231 0.769 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.218 0.782 44 H 0.065 0.935 45 H 0.091 0.909 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.889 18.227 -10.503 28.273 hybrid contribution 0.575 0.270 0.638 0.900 sum -18.314 18.497 -9.865 27.836 Atomic orbital electron populations 1.23172 0.78740 1.04445 1.01072 1.86403 1.20740 1.25349 1.86485 1.19085 0.91040 0.84951 0.91396 1.21256 1.00362 0.92088 1.10377 1.21120 0.94771 0.97058 0.94427 1.20996 0.93838 0.98532 1.05266 1.21205 0.99991 0.90818 0.94609 1.19444 0.90917 0.94256 1.12755 1.17972 0.82072 0.88587 0.77197 1.90839 1.71602 1.28640 1.48511 1.45935 1.05741 1.10228 1.75851 1.21518 0.89433 0.86009 1.02528 1.22238 0.92642 0.98708 0.98619 0.90779 1.22498 0.97532 0.98754 0.96221 1.23118 0.94384 0.99048 1.02119 1.20800 0.94866 0.88419 0.89518 0.93419 1.42544 1.07755 1.43133 1.42749 1.19211 0.86927 1.16155 1.14712 0.91302 1.24741 0.96890 0.99523 0.99888 1.69651 1.25698 1.29299 1.33479 0.86290 0.83401 0.77747 0.78877 1.21361 1.21760 1.21332 1.22467 0.96902 0.96703 0.99950 0.87870 0.92594 0.92655 0.84844 0.85357 0.85201 0.84912 0.76920 0.90926 0.91615 0.93053 0.91261 0.91003 0.93362 0.78239 0.93494 0.90869 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.28 -3.57 8.57 -40.54 -0.35 -3.92 16 3 C 0.18 2.13 6.70 -38.69 -0.26 1.87 16 4 C -0.22 -1.85 9.03 -39.48 -0.36 -2.21 16 5 C -0.06 -0.38 10.03 -39.54 -0.40 -0.78 16 6 C -0.17 -1.19 10.02 -39.63 -0.40 -1.59 16 7 C -0.05 -0.41 9.54 -39.20 -0.37 -0.78 16 8 C -0.17 -2.03 5.89 -104.84 -0.62 -2.65 16 9 C 0.55 8.11 7.76 -12.47 -0.10 8.01 16 10 O -0.52 -9.70 15.16 -16.60 -0.25 -9.95 16 11 N -0.72 -8.91 5.40 -61.34 -0.33 -9.24 16 12 C 0.13 1.78 4.96 -4.04 -0.02 1.76 16 13 C -0.10 -1.38 2.89 -88.96 -0.26 -1.63 16 14 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 15 C -0.11 -1.65 6.19 -24.74 -0.15 -1.80 16 16 C -0.15 -2.52 6.54 -25.07 -0.16 -2.69 16 17 C 0.17 3.42 3.55 -66.81 -0.24 3.18 16 18 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 19 N -0.72 -18.06 5.08 -52.34 -0.27 -18.32 16 20 C -0.24 -6.65 9.96 -15.06 -0.15 -6.80 16 21 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 23 N -0.93 -28.55 13.06 55.49 0.72 -27.82 16 24 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 C -0.12 -1.97 6.14 -25.61 -0.16 -2.13 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 32 H 0.13 0.79 6.30 -52.49 -0.33 0.46 16 33 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 35 H 0.13 0.83 6.40 -52.49 -0.34 0.50 16 36 H 0.40 3.70 6.47 -40.82 -0.26 3.44 16 37 H 0.07 1.17 8.02 -51.93 -0.42 0.76 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 1.16 7.97 -51.93 -0.41 0.75 16 41 H 0.07 1.44 8.04 -51.93 -0.42 1.03 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.38 10.30 7.52 -40.82 -0.31 9.99 16 44 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 45 H 0.07 1.31 7.31 -51.93 -0.38 0.93 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 375.18 15.07 5.65 5.65 Total: -1.00 -34.84 375.18 -9.59 -44.43 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.01 Total: 9.18 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -2.74 Total: -7.59 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: 0.13 Total: -55.38 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.60 Total: -13.87 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.84 -9.59 -44.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086860322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.335 kcal (2) G-P(sol) polarization free energy of solvation -34.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds