Wall clock time and date at job start Tue Mar 31 2020 12:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35655 * 116.99962 * 2 1 4 4 C 1.38704 * 120.15373 * 359.97438 * 3 2 1 5 5 C 1.38053 * 120.08455 * 180.02562 * 4 3 2 6 6 C 1.38548 * 120.39153 * 359.74441 * 5 4 3 7 7 C 1.37782 * 120.30001 * 0.51341 * 6 5 4 8 8 C 1.39709 * 119.90703 * 359.48541 * 7 6 5 9 9 C 1.47536 * 120.19039 * 180.23021 * 8 7 6 10 10 O 1.21599 * 119.99836 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00250 * 0.02562 * 9 8 7 12 12 C 1.46502 * 119.99860 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46804 * 179.97438 * 12 11 9 14 14 H 1.09005 * 110.43419 * 307.53745 * 13 12 11 15 15 C 1.54891 * 110.48714 * 70.22277 * 13 12 11 16 16 C 1.54887 * 102.74832 * 156.62204 * 15 13 12 17 17 C 1.54264 * 104.19617 * 322.05573 * 16 15 13 18 18 H 1.08999 * 110.07650 * 142.91707 * 17 16 15 19 19 N 1.46497 * 110.03461 * 264.32652 * 17 16 15 20 20 C 1.36932 * 120.00051 * 272.16595 * 19 17 16 21 21 H 1.08000 * 120.00453 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99898 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00383 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00009 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.46959 * 60.00153 * 24 22 20 26 26 H 1.48497 * 109.47338 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47366 * 300.00219 * 24 22 20 28 28 C 1.53885 * 106.59692 * 23.61257 * 17 16 15 29 29 H 1.08996 * 109.47467 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46782 * 299.99471 * 1 2 3 31 31 H 1.09004 * 109.47490 * 59.99227 * 1 2 3 32 32 H 1.07997 * 119.95609 * 0.04114 * 4 3 2 33 33 H 1.07999 * 119.80281 * 180.02562 * 5 4 3 34 34 H 1.08000 * 119.84791 * 180.25864 * 6 5 4 35 35 H 1.08002 * 120.04937 * 179.77127 * 7 6 5 36 36 H 0.96999 * 119.99664 * 359.97438 * 11 9 8 37 37 H 1.09002 * 109.46785 * 299.99154 * 12 11 9 38 38 H 1.08994 * 109.47517 * 59.99848 * 12 11 9 39 39 H 1.09001 * 110.75322 * 274.93684 * 15 13 12 40 40 H 1.08999 * 110.75524 * 38.30405 * 15 13 12 41 41 H 1.09003 * 110.48516 * 203.38228 * 16 15 13 42 42 H 1.09001 * 110.60191 * 80.78844 * 16 15 13 43 43 H 0.97008 * 120.00096 * 92.16574 * 19 17 16 44 44 H 0.96995 * 120.00309 * 180.02562 * 23 22 20 45 45 H 1.09002 * 110.02794 * 240.71543 * 28 17 16 46 46 H 1.09001 * 110.02941 * 119.28507 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2925 2.3740 -0.0005 5 6 1.9207 3.6033 -0.0011 6 6 3.3038 3.6836 0.0043 7 6 4.0668 2.5363 -0.0005 8 6 3.4441 1.2857 0.0001 9 6 4.2550 0.0531 0.0001 10 8 3.7094 -1.0336 0.0002 11 7 5.6005 0.1316 0.0001 12 6 6.4056 -1.0923 0.0007 13 6 7.8910 -0.7255 -0.0001 14 1 8.1110 -0.0307 -0.8107 15 6 8.3002 -0.1180 1.3646 16 6 9.8260 -0.3798 1.4116 17 6 9.9906 -1.7740 0.7722 18 1 10.9004 -1.8058 0.1729 19 7 10.0409 -2.8016 1.8151 20 6 11.2382 -3.1365 2.3891 21 1 12.1455 -2.6434 2.0727 22 6 11.2858 -4.1099 3.3776 23 7 10.1803 -4.7113 3.7629 24 14 12.9192 -4.5672 4.1601 25 1 13.5105 -3.3689 4.8078 26 1 12.7007 -5.6237 5.1806 27 1 13.8449 -5.0722 3.1145 28 6 8.7602 -1.9938 -0.1255 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 0.2139 2.3195 -0.0003 33 1 1.3305 4.5077 -0.0011 34 1 3.7861 4.6499 0.0080 35 1 5.1447 2.6037 -0.0001 36 1 6.0357 0.9985 -0.0003 37 1 6.1761 -1.6777 0.8911 38 1 6.1760 -1.6787 -0.8889 39 1 8.0907 0.9515 1.3896 40 1 7.7948 -0.6309 2.1829 41 1 10.1799 -0.3888 2.4426 42 1 10.3621 0.3715 0.8317 43 1 9.2261 -3.2448 2.0991 44 1 10.2135 -5.3911 4.4539 45 1 8.2006 -2.8651 0.2149 46 1 9.0730 -2.1314 -1.1605 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086860322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:37 Heat of formation + Delta-G solvation = -65.840360 kcal Electronic energy + Delta-G solvation = -25992.725332 eV Core-core repulsion = 22267.524648 eV Total energy + Delta-G solvation = -3725.200683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.57762 -40.25090 -39.29778 -38.25068 -36.25526 -34.95133 -32.86724 -32.09450 -31.08009 -30.17879 -28.85786 -28.12806 -26.06609 -25.10762 -24.24732 -22.91823 -21.69582 -21.07898 -20.64485 -19.45648 -19.09500 -18.11187 -17.55273 -16.92182 -16.82792 -16.59996 -16.24129 -16.04362 -15.93491 -15.59238 -15.44129 -15.10801 -14.60607 -14.46264 -14.34010 -14.17597 -13.63473 -13.39587 -13.12088 -13.06673 -12.93233 -12.57413 -12.45376 -12.37148 -12.16659 -12.10814 -12.04101 -11.93578 -11.70244 -11.60999 -11.48623 -11.39073 -10.88530 -10.83441 -10.20978 -9.94394 -9.22483 -8.95497 -7.91986 -5.19720 -0.12198 0.42591 1.46313 1.49635 1.55686 1.91746 2.17200 2.36194 2.57741 2.87485 3.39580 3.64905 3.71453 3.81172 3.83203 3.86602 4.01635 4.21392 4.23803 4.35208 4.35802 4.42656 4.45771 4.53852 4.56086 4.61119 4.69356 4.69811 4.81047 4.84486 4.86427 4.96395 5.09590 5.15513 5.18894 5.23950 5.33919 5.40190 5.46250 5.48330 5.52615 5.59935 5.68505 5.78529 6.31175 6.39870 6.61658 7.29034 7.35439 8.16121 8.36835 9.31681 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023002 B = 0.002297 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.973946 B =12187.852615 C =12745.864322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.321 6.321 3 C 0.157 3.843 4 C -0.224 4.224 5 C -0.047 4.047 6 C -0.165 4.165 7 C -0.046 4.046 8 C -0.204 4.204 9 C 0.549 3.451 10 O -0.575 6.575 11 N -0.710 5.710 12 C 0.136 3.864 13 C -0.082 4.082 14 H 0.113 0.887 15 C -0.106 4.106 16 C -0.138 4.138 17 C 0.161 3.839 18 H 0.046 0.954 19 N -0.735 5.735 20 C -0.236 4.236 21 H 0.076 0.924 22 C -0.082 4.082 23 N -0.973 5.973 24 Si 0.972 3.028 25 H -0.277 1.277 26 H -0.299 1.299 27 H -0.277 1.277 28 C -0.118 4.118 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.155 0.845 36 H 0.413 0.587 37 H 0.040 0.960 38 H 0.060 0.940 39 H 0.090 0.910 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.081 0.919 43 H 0.369 0.631 44 H 0.249 0.751 45 H 0.047 0.953 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.580 23.411 -11.894 32.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.233 6.233 3 C 0.109 3.891 4 C -0.243 4.243 5 C -0.065 4.065 6 C -0.183 4.183 7 C -0.065 4.065 8 C -0.208 4.208 9 C 0.338 3.662 10 O -0.455 6.455 11 N -0.363 5.363 12 C 0.012 3.988 13 C -0.101 4.101 14 H 0.131 0.869 15 C -0.144 4.144 16 C -0.178 4.178 17 C 0.053 3.947 18 H 0.064 0.936 19 N -0.375 5.375 20 C -0.368 4.368 21 H 0.094 0.906 22 C -0.274 4.274 23 N -0.625 5.625 24 Si 0.801 3.199 25 H -0.204 1.204 26 H -0.225 1.225 27 H -0.203 1.203 28 C -0.156 4.156 29 H 0.123 0.877 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.172 0.828 33 H 0.181 0.819 34 H 0.180 0.820 35 H 0.173 0.827 36 H 0.252 0.748 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.099 0.901 43 H 0.201 0.799 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.672 22.403 -11.877 31.490 hybrid contribution 0.462 -0.886 0.987 1.405 sum -18.211 21.517 -10.889 30.219 Atomic orbital electron populations 1.23396 0.76785 1.05230 1.02644 1.86341 1.23102 1.26898 1.86964 1.19477 0.91430 0.85612 0.92583 1.21543 1.01390 0.91554 1.09806 1.21618 0.95249 0.97621 0.92019 1.21432 0.94041 0.99225 1.03575 1.21487 1.01323 0.89929 0.93729 1.19470 0.91161 0.94150 1.16003 1.18549 0.82609 0.89044 0.75995 1.90798 1.72641 1.30849 1.51226 1.45732 1.05133 1.10414 1.75016 1.21274 0.90185 0.86556 1.00805 1.22111 0.91176 0.97701 0.99126 0.86899 1.22446 0.95244 1.00864 0.95810 1.22949 0.96516 0.98092 1.00253 1.21150 0.96315 0.88403 0.88826 0.93617 1.42780 1.06371 1.44462 1.43911 1.19630 0.88066 1.15162 1.13924 0.90565 1.25576 1.00223 1.00316 1.01244 1.69829 1.27891 1.30319 1.34430 0.85222 0.79504 0.77312 0.77817 1.20363 1.22502 1.20349 1.22388 0.95737 0.97326 1.00189 0.87664 0.91103 0.90833 0.82783 0.81890 0.81979 0.82706 0.74850 0.94183 0.92128 0.89180 0.94343 0.94348 0.90055 0.79921 0.94238 0.93409 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.32 -8.64 8.57 -68.79 -0.59 -9.23 16 3 C 0.16 3.63 6.70 22.84 0.15 3.78 16 4 C -0.22 -3.27 9.03 22.34 0.20 -3.07 16 5 C -0.05 -0.47 10.03 22.30 0.22 -0.24 16 6 C -0.16 -1.67 10.02 22.24 0.22 -1.44 16 7 C -0.05 -0.67 9.54 22.52 0.21 -0.46 16 8 C -0.20 -4.80 5.89 -20.01 -0.12 -4.92 16 9 C 0.55 16.49 7.76 86.70 0.67 17.17 16 10 O -0.57 -22.96 15.16 16.89 0.26 -22.71 16 11 N -0.71 -16.93 5.40 -466.25 -2.52 -19.45 16 12 C 0.14 3.80 4.96 86.38 0.43 4.23 16 13 C -0.08 -2.04 2.89 -9.72 -0.03 -2.07 16 14 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 15 C -0.11 -2.92 6.19 31.89 0.20 -2.72 16 16 C -0.14 -4.56 6.54 31.67 0.21 -4.35 16 17 C 0.16 6.27 3.55 45.72 0.16 6.43 16 18 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 19 N -0.74 -37.89 5.08 -319.51 -1.62 -39.51 16 20 C -0.24 -13.33 9.96 84.03 0.84 -12.49 16 21 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 22 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 23 N -0.97 -61.75 13.06 21.65 0.28 -61.46 16 24 Si 0.97 47.25 29.55 68.60 2.03 49.27 16 25 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 26 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 C -0.12 -3.75 6.14 31.32 0.19 -3.55 16 29 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 0.80 7.66 -2.39 -0.02 0.79 16 31 H 0.07 0.79 7.66 -2.38 -0.02 0.77 16 32 H 0.15 1.45 6.30 -2.91 -0.02 1.43 16 33 H 0.16 0.48 8.06 -2.91 -0.02 0.46 16 34 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 35 H 0.16 1.37 6.40 -2.91 -0.02 1.35 16 36 H 0.41 6.63 6.47 -92.71 -0.60 6.03 16 37 H 0.04 1.39 8.02 -2.39 -0.02 1.37 16 38 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.04 1.30 7.97 -2.39 -0.02 1.28 16 41 H 0.04 1.53 8.04 -2.39 -0.02 1.51 16 42 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.37 20.85 7.52 -92.70 -0.70 20.15 16 44 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 45 H 0.05 1.78 7.31 -2.39 -0.02 1.76 16 46 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -81.59 375.18 2.68 -78.91 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: -0.30 Total: 30.94 kcal Atomic # 6 Polarization: -11.90 SS G_CDS: 5.15 Total: -6.76 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -3.86 Total: -120.43 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.33 Total: -31.94 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.27 kcal Total: -81.59 2.68 -78.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086860322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.068 kcal (2) G-P(sol) polarization free energy of solvation -81.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds