Wall clock time and date at job start Tue Mar 31 2020 12:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35893 * 117.00098 * 2 1 4 4 C 1.38640 * 119.95033 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.86889 * 179.97438 * 4 3 2 6 6 C 1.38170 * 119.99833 * 0.02562 * 5 4 3 7 7 C 1.38499 * 120.33697 * 0.02562 * 6 5 4 8 8 C 1.38175 * 119.87700 * 359.97438 * 7 6 5 9 9 C 1.51358 * 109.77883 * 180.02562 * 8 7 6 10 10 H 1.08995 * 110.38779 * 136.14815 * 9 8 7 11 11 C 1.50698 * 110.30675 * 258.26354 * 9 8 7 12 12 O 1.21286 * 119.99758 * 357.19422 * 11 9 8 13 13 N 1.34770 * 120.00019 * 177.19691 * 11 9 8 14 14 C 1.46507 * 119.99912 * 180.02562 * 13 11 9 15 15 C 1.52992 * 109.47485 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47482 * 179.97438 * 15 14 13 17 17 N 1.46505 * 109.47212 * 179.97438 * 16 15 14 18 18 C 1.36936 * 119.99992 * 179.97438 * 17 16 15 19 19 H 1.08006 * 119.99834 * 0.02562 * 18 17 16 20 20 C 1.38801 * 120.00093 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00176 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00265 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46968 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47299 * 119.99957 * 22 20 18 25 25 H 1.48495 * 109.47075 * 240.00117 * 22 20 18 26 26 C 1.54348 * 105.16500 * 17.18372 * 9 8 7 27 27 C 1.51374 * 130.36875 * 179.97438 * 7 6 5 28 28 H 1.08998 * 109.47206 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47205 * 299.99627 * 1 2 3 30 30 H 1.09002 * 109.47182 * 59.99668 * 1 2 3 31 31 H 1.07999 * 120.06558 * 359.97438 * 4 3 2 32 32 H 1.08004 * 119.99688 * 180.02562 * 5 4 3 33 33 H 1.08008 * 119.83184 * 180.02562 * 6 5 4 34 34 H 0.96992 * 120.00518 * 359.97438 * 13 11 9 35 35 H 1.09002 * 109.47280 * 59.99618 * 14 13 11 36 36 H 1.09001 * 109.46702 * 299.99811 * 14 13 11 37 37 H 1.09002 * 109.47103 * 59.99596 * 15 14 13 38 38 H 1.08998 * 109.46862 * 300.00408 * 15 14 13 39 39 H 1.09002 * 109.47153 * 59.99783 * 16 15 14 40 40 H 1.09001 * 109.46832 * 299.99974 * 16 15 14 41 41 H 0.96996 * 119.99606 * 0.02562 * 17 16 15 42 42 H 0.97001 * 120.00803 * 179.97438 * 21 20 18 43 43 H 1.09005 * 110.82306 * 91.88438 * 26 9 8 44 44 H 1.09001 * 110.82769 * 215.43718 * 26 9 8 45 45 H 1.08995 * 110.30526 * 43.88963 * 27 7 6 46 46 H 1.09001 * 110.30529 * 281.73200 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2899 2.3729 0.0005 5 6 1.9187 3.6027 0.0011 6 6 3.2987 3.6730 0.0005 7 6 4.0581 2.5148 -0.0011 8 6 3.4336 1.2822 -0.0016 9 6 4.4726 0.1816 -0.0028 10 1 4.1978 -0.6007 0.7047 11 6 4.6220 -0.3951 -1.3870 12 8 3.9161 0.0031 -2.2893 13 7 5.5399 -1.3534 -1.6222 14 6 5.6855 -1.9137 -2.9681 15 6 6.7883 -2.9741 -2.9626 16 6 6.9399 -3.5597 -4.3679 17 7 7.9964 -4.5747 -4.3627 18 6 8.3120 -5.2404 -5.5170 19 1 7.7824 -5.0168 -6.4314 20 6 9.3126 -6.2024 -5.5120 21 7 9.9576 -6.4752 -4.3976 22 14 9.7437 -7.1100 -7.0868 23 1 8.8795 -6.6222 -8.1916 24 1 11.1679 -6.8624 -7.4268 25 1 9.5268 -8.5663 -6.8940 26 6 5.7849 0.8647 0.4373 27 6 5.5602 2.3273 -0.0025 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 0.2114 2.3167 0.0005 32 1 1.3318 4.5093 0.0019 33 1 3.7876 4.6361 0.0014 34 1 6.1047 -1.6717 -0.9008 35 1 5.9496 -1.1191 -3.6659 36 1 4.7443 -2.3694 -3.2756 37 1 6.5247 -3.7689 -2.2647 38 1 7.7293 -2.5181 -2.6551 39 1 7.2034 -2.7652 -5.0661 40 1 5.9988 -4.0159 -4.6749 41 1 8.4717 -4.7757 -3.5414 42 1 10.6566 -7.1478 -4.3939 43 1 5.9121 0.7998 1.5179 44 1 6.6401 0.4315 -0.0814 45 1 6.0273 3.0108 0.7064 46 1 5.9604 2.4875 -1.0036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167847100.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:37 Heat of formation + Delta-G solvation = -44.780622 kcal Electronic energy + Delta-G solvation = -25861.486174 eV Core-core repulsion = 22137.198710 eV Total energy + Delta-G solvation = -3724.287465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.14821 -39.48041 -38.16913 -36.00977 -35.46397 -34.28789 -31.98236 -31.05348 -29.94349 -29.21387 -27.83517 -27.36686 -25.16452 -23.00089 -22.72297 -21.81447 -21.16472 -21.09629 -19.87776 -17.96188 -17.26287 -16.88360 -16.69586 -16.15327 -15.86645 -15.61870 -15.40887 -15.03274 -14.60105 -14.39580 -14.27944 -13.94450 -13.51180 -13.28799 -13.12822 -12.95352 -12.86484 -12.42582 -12.33093 -12.07587 -11.75627 -11.62781 -11.48414 -11.40689 -11.20823 -11.11747 -10.92834 -10.91300 -10.75195 -10.59704 -10.04585 -9.80252 -9.67462 -8.96969 -8.87647 -8.82719 -8.33865 -6.92500 -5.76636 -3.05431 1.05524 1.24098 2.68920 3.08193 3.16929 3.44115 3.49817 3.52161 3.58859 4.06975 4.17875 4.59704 4.63336 4.65315 4.69225 4.76323 4.86760 4.91409 5.00258 5.07153 5.19553 5.21671 5.24669 5.34396 5.40692 5.41219 5.52983 5.58578 5.60504 5.66768 5.72346 5.80852 6.04065 6.08012 6.10303 6.18836 6.21773 6.31473 6.34106 6.53210 6.55042 6.81042 6.85249 7.17743 7.55499 7.71423 8.29011 8.42417 9.53570 10.10837 10.45643 11.46468 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024878 B = 0.002089 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.199769 B =13398.351810 C =13959.020987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C 0.159 3.841 4 C -0.215 4.215 5 C -0.076 4.076 6 C -0.149 4.149 7 C -0.049 4.049 8 C -0.106 4.106 9 C -0.062 4.062 10 H 0.107 0.893 11 C 0.521 3.479 12 O -0.531 6.531 13 N -0.729 5.729 14 C 0.124 3.876 15 C -0.137 4.137 16 C 0.156 3.844 17 N -0.734 5.734 18 C -0.238 4.238 19 H 0.072 0.928 20 C -0.016 4.016 21 N -0.934 5.934 22 Si 0.908 3.092 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C -0.113 4.113 27 C -0.084 4.084 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.400 0.600 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.021 0.979 40 H 0.021 0.979 41 H 0.384 0.616 42 H 0.254 0.746 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.449 20.940 16.208 31.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.114 3.886 4 C -0.234 4.234 5 C -0.094 4.094 6 C -0.167 4.167 7 C -0.049 4.049 8 C -0.107 4.107 9 C -0.084 4.084 10 H 0.125 0.875 11 C 0.307 3.693 12 O -0.407 6.407 13 N -0.381 5.381 14 C 0.000 4.000 15 C -0.175 4.175 16 C 0.028 3.972 17 N -0.378 5.378 18 C -0.369 4.369 19 H 0.089 0.911 20 C -0.212 4.212 21 N -0.583 5.583 22 Si 0.739 3.261 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.218 1.218 26 C -0.151 4.151 27 C -0.121 4.121 28 H 0.118 0.882 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.140 0.860 34 H 0.234 0.766 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.039 0.961 40 H 0.039 0.961 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.101 0.899 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.892 20.966 15.342 30.989 hybrid contribution 0.320 -0.697 -0.295 0.821 sum -16.573 20.269 15.048 30.198 Atomic orbital electron populations 1.23053 0.78536 1.03998 1.01151 1.86111 1.21236 1.26913 1.88267 1.18546 0.90624 0.84400 0.95047 1.21090 0.99860 0.92178 1.10231 1.20799 0.94238 0.96942 0.97414 1.20475 0.93419 0.97394 1.05440 1.20384 0.95670 0.92350 0.96493 1.19164 0.90019 0.94852 1.06708 1.20652 0.94785 0.97349 0.95566 0.87506 1.20299 0.79801 0.79213 0.90011 1.90705 1.44017 1.60064 1.45893 1.46051 1.38936 1.40355 1.12709 1.21334 0.99455 0.96279 0.82942 1.21937 0.97790 0.97558 1.00231 1.20523 0.92477 0.91649 0.92550 1.42351 1.41104 1.43832 1.10533 1.19294 1.14486 1.14247 0.88910 0.91051 1.24755 0.99165 1.00025 0.97229 1.69668 1.27013 1.36219 1.25441 0.86093 0.77871 0.79487 0.82625 1.20515 1.21851 1.21850 1.22384 0.95669 0.94781 1.02249 1.21105 0.91282 0.97008 1.02691 0.88250 0.92789 0.92622 0.85331 0.85628 0.86025 0.76610 0.91494 0.91496 0.91307 0.91302 0.96071 0.96075 0.78303 0.93568 0.89541 0.89611 0.89924 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.78 10.44 -19.41 -0.20 -3.98 16 3 C 0.16 1.94 6.69 -39.17 -0.26 1.68 16 4 C -0.21 -2.15 9.03 -39.47 -0.36 -2.51 16 5 C -0.08 -0.68 10.04 -39.65 -0.40 -1.08 16 6 C -0.15 -1.41 10.04 -39.51 -0.40 -1.81 16 7 C -0.05 -0.52 6.14 -104.22 -0.64 -1.16 16 8 C -0.11 -1.28 4.70 -104.06 -0.49 -1.77 16 9 C -0.06 -0.67 3.21 -91.90 -0.29 -0.96 16 10 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 11 C 0.52 7.14 7.11 -10.99 -0.08 7.06 16 12 O -0.53 -9.54 16.10 5.55 0.09 -9.45 16 13 N -0.73 -8.83 5.26 -60.29 -0.32 -9.15 16 14 C 0.12 1.76 5.67 -4.04 -0.02 1.73 16 15 C -0.14 -2.13 5.44 -26.74 -0.15 -2.28 16 16 C 0.16 3.17 6.26 -4.04 -0.03 3.14 16 17 N -0.73 -18.87 5.60 -59.91 -0.34 -19.21 16 18 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 19 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 20 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 21 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 22 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 26 C -0.11 -0.88 6.56 -25.31 -0.17 -1.04 16 27 C -0.08 -0.71 6.76 -26.84 -0.18 -0.89 16 28 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 31 H 0.13 0.98 6.29 -52.49 -0.33 0.65 16 32 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.12 0.88 8.06 -52.48 -0.42 0.45 16 34 H 0.40 3.75 8.23 -40.82 -0.34 3.41 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.38 10.22 7.67 -40.82 -0.31 9.90 16 42 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.09 0.61 7.45 -51.93 -0.39 0.22 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 381.04 15.07 5.74 5.74 Total: -1.00 -35.84 381.04 -9.24 -45.08 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -7.20 Total: 7.25 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -2.71 Total: -6.17 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.07 Total: -56.09 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.11 Total: -13.44 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.84 -9.24 -45.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167847100.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.298 kcal (2) G-P(sol) polarization free energy of solvation -35.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds