Wall clock time and date at job start Tue Mar 31 2020 12:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35899 * 116.99866 * 2 1 4 4 C 1.38759 * 120.05915 * 0.25266 * 3 2 1 5 5 C 1.38126 * 119.94316 * 180.31345 * 4 3 2 6 6 C 1.38284 * 120.05485 * 359.68674 * 5 4 3 7 7 C 1.38244 * 120.11341 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05821 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.03103 * 179.97438 * 8 7 6 10 10 N 1.46493 * 109.47083 * 259.99648 * 9 8 7 11 11 C 1.34777 * 119.99802 * 179.97438 * 10 9 8 12 12 O 1.21587 * 120.00147 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99885 * 180.02562 * 11 10 9 14 14 C 1.46508 * 120.00034 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.40935 * 34.99924 * 14 13 11 16 16 C 1.52956 * 109.41412 * 154.85730 * 14 13 11 17 17 C 1.53226 * 109.40659 * 183.70370 * 16 14 13 18 18 C 1.51274 * 108.53572 * 305.37775 * 17 16 14 19 19 C 1.37881 * 120.84518 * 231.36461 * 18 17 16 20 20 N 1.31518 * 119.99407 * 164.52571 * 19 18 17 21 21 Si 1.86800 * 120.00138 * 344.52590 * 19 18 17 22 22 H 1.48498 * 109.47195 * 354.63891 * 21 19 18 23 23 H 1.48497 * 109.46791 * 114.63837 * 21 19 18 24 24 H 1.48502 * 109.47076 * 234.63694 * 21 19 18 25 25 C 1.51262 * 118.30024 * 51.34491 * 18 17 16 26 26 C 1.52958 * 109.40995 * 275.14350 * 14 13 11 27 27 H 1.08993 * 109.47113 * 300.00053 * 1 2 3 28 28 H 1.08999 * 109.46861 * 59.99933 * 1 2 3 29 29 H 1.08990 * 109.47179 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.02700 * 0.02562 * 4 3 2 31 31 H 1.07995 * 119.96865 * 179.70275 * 5 4 3 32 32 H 1.08003 * 119.94637 * 180.02562 * 6 5 4 33 33 H 1.08007 * 119.96905 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.46824 * 139.99780 * 9 8 7 35 35 H 1.08992 * 109.46685 * 19.99905 * 9 8 7 36 36 H 0.97004 * 120.00283 * 0.02562 * 10 9 8 37 37 H 0.97004 * 120.00200 * 0.02562 * 13 11 10 38 38 H 1.09003 * 109.48440 * 303.68900 * 16 14 13 39 39 H 1.09003 * 109.48147 * 63.72723 * 16 14 13 40 40 H 1.09002 * 109.62461 * 65.08502 * 17 16 14 41 41 H 1.08992 * 109.63024 * 185.46871 * 17 16 14 42 42 H 0.97005 * 119.99273 * 180.02562 * 20 19 18 43 43 H 1.08998 * 109.62952 * 68.36753 * 25 18 17 44 44 H 1.09002 * 109.62786 * 188.74760 * 25 18 17 45 45 H 1.08999 * 109.48439 * 296.26878 * 26 14 13 46 46 H 1.08998 * 109.48597 * 56.31610 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 0.0053 5 6 1.9209 3.6048 -0.0013 6 6 3.3019 3.6758 -0.0066 7 6 4.0560 2.5171 -0.0058 8 6 3.4312 1.2849 -0.0003 9 6 4.2538 0.0221 -0.0001 10 7 4.3143 -0.5215 -1.3591 11 6 5.0012 -1.6554 -1.6014 12 8 5.5704 -2.2275 -0.6919 13 7 5.0573 -2.1553 -2.8518 14 6 5.8036 -3.3883 -3.1150 15 1 5.7091 -4.0583 -2.2605 16 6 5.2359 -4.0700 -4.3609 17 6 5.9545 -5.4050 -4.5830 18 6 7.4439 -5.1460 -4.6381 19 6 8.2065 -5.6240 -5.6826 20 7 9.4160 -5.1488 -5.8850 21 14 7.5216 -6.9464 -6.8103 22 1 6.2043 -7.4010 -6.2972 23 1 7.3559 -6.3931 -8.1783 24 1 8.4603 -8.0964 -6.8517 25 6 8.0751 -4.3488 -3.5182 26 6 7.2792 -3.0518 -3.3365 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2129 2.3204 0.0098 31 1 1.3340 4.5114 -0.0020 32 1 3.7923 4.6380 -0.0113 33 1 5.1345 2.5752 -0.0104 34 1 3.7949 -0.7103 0.6641 35 1 5.2625 0.2458 0.3470 36 1 3.8605 -0.0649 -2.0848 37 1 4.6036 -1.6987 -3.5774 38 1 4.1696 -4.2497 -4.2231 39 1 5.3873 -3.4271 -5.2280 40 1 5.7311 -6.0825 -3.7589 41 1 5.6222 -5.8481 -5.5217 42 1 9.9523 -5.4849 -6.6201 43 1 8.0479 -4.9285 -2.5956 44 1 9.1087 -4.1145 -3.7729 45 1 7.3812 -2.4336 -4.2284 46 1 7.6622 -2.5094 -2.4721 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186151680.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:31 Heat of formation + Delta-G solvation = -54.723242 kcal Electronic energy + Delta-G solvation = -26291.544494 eV Core-core repulsion = 22566.825885 eV Total energy + Delta-G solvation = -3724.718609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.65083 -39.51610 -37.76721 -36.84037 -34.72367 -33.55385 -31.90144 -31.05399 -30.41798 -29.50881 -27.79828 -27.27540 -25.70673 -22.47229 -22.22935 -21.63323 -21.48227 -20.29530 -19.43386 -18.46565 -17.86899 -16.62302 -16.36050 -16.06224 -15.86595 -15.60707 -14.91888 -14.77419 -14.35247 -14.30865 -14.04976 -13.87286 -13.22193 -13.06428 -12.88366 -12.84889 -12.59032 -12.30388 -12.12185 -11.93460 -11.71198 -11.55481 -11.46727 -11.10350 -10.90793 -10.79752 -10.70272 -10.15955 -9.83333 -9.74824 -9.49391 -9.26192 -9.02894 -8.88015 -8.74653 -8.51350 -8.31935 -8.07804 -6.08142 -3.92916 0.89141 1.08823 2.94985 3.07062 3.28406 3.39030 3.41826 3.53822 3.69173 4.34885 4.42447 4.46860 4.66471 4.71429 4.74607 4.80413 4.97297 5.00855 5.16476 5.18669 5.28425 5.46798 5.56196 5.76764 5.85722 5.95785 6.01332 6.11284 6.20501 6.28615 6.42985 6.59038 6.66496 6.69155 6.79406 6.89910 6.93217 7.04151 7.11686 7.22445 7.26081 7.45806 7.51006 7.72115 7.85376 7.92130 8.43805 8.48909 9.02872 9.07491 9.59360 11.01689 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025651 B = 0.002455 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.296890 B =11401.123592 C =11913.803721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.145 3.855 4 C -0.214 4.214 5 C -0.075 4.075 6 C -0.161 4.161 7 C -0.061 4.061 8 C -0.138 4.138 9 C 0.192 3.808 10 N -0.745 5.745 11 C 0.702 3.298 12 O -0.593 6.593 13 N -0.740 5.740 14 C 0.172 3.828 15 H 0.076 0.924 16 C -0.111 4.111 17 C -0.011 4.011 18 C -0.492 4.492 19 C 0.079 3.921 20 N -0.883 5.883 21 Si 0.879 3.121 22 H -0.262 1.262 23 H -0.284 1.284 24 H -0.286 1.286 25 C 0.011 3.989 26 C -0.112 4.112 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.101 0.899 30 H 0.128 0.872 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.392 0.608 37 H 0.388 0.612 38 H 0.036 0.964 39 H 0.055 0.945 40 H 0.016 0.984 41 H 0.035 0.965 42 H 0.263 0.737 43 H 0.005 0.995 44 H 0.056 0.944 45 H 0.048 0.952 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.406 17.753 9.733 27.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.098 3.902 4 C -0.232 4.232 5 C -0.093 4.093 6 C -0.179 4.179 7 C -0.080 4.080 8 C -0.139 4.139 9 C 0.068 3.932 10 N -0.402 5.402 11 C 0.402 3.598 12 O -0.471 6.471 13 N -0.393 5.393 14 C 0.069 3.931 15 H 0.094 0.906 16 C -0.150 4.150 17 C -0.050 4.050 18 C -0.511 4.511 19 C -0.124 4.124 20 N -0.520 5.520 21 Si 0.706 3.294 22 H -0.186 1.186 23 H -0.210 1.210 24 H -0.212 1.212 25 C -0.027 4.027 26 C -0.151 4.151 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.151 0.849 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.225 0.775 37 H 0.220 0.780 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.035 0.965 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.023 0.977 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -17.611 16.965 10.479 26.604 hybrid contribution -1.059 0.085 -1.401 1.758 sum -18.670 17.049 9.079 26.864 Atomic orbital electron populations 1.23084 0.78365 1.04213 1.01172 1.86187 1.21275 1.26377 1.88049 1.18930 0.91744 0.84459 0.95044 1.21248 1.00086 0.92342 1.09562 1.20983 0.94753 0.96961 0.96648 1.21077 0.93890 0.98499 1.04432 1.21025 1.00304 0.90826 0.95811 1.19348 0.90591 0.95816 1.08126 1.19726 0.98496 0.91025 0.83933 1.45115 1.57646 1.27165 1.10260 1.15997 0.79562 0.80454 0.83792 1.90907 1.50748 1.61451 1.43967 1.45596 1.57030 1.29273 1.07437 1.20898 0.91444 0.82729 0.98042 0.90556 1.21843 0.97056 0.99864 0.96218 1.19709 0.95984 0.92062 0.97214 1.20025 0.91108 1.33186 1.06776 1.24825 0.94924 0.96142 0.96551 1.69931 1.10820 1.40713 1.30515 0.86785 0.79521 0.82645 0.80415 1.18605 1.21047 1.21210 1.19364 0.97457 0.91084 0.94754 1.21940 0.94100 1.00399 0.98697 0.92690 0.92636 0.88069 0.85406 0.85792 0.85683 0.84929 0.90771 0.91047 0.77539 0.78012 0.94527 0.92615 0.96536 0.94667 0.92726 0.97694 0.92571 0.93331 0.94794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.31 -3.15 9.74 -19.42 -0.19 -3.34 16 3 C 0.14 1.43 6.66 -39.21 -0.26 1.17 16 4 C -0.21 -1.69 9.04 -39.43 -0.36 -2.05 16 5 C -0.08 -0.54 10.04 -39.61 -0.40 -0.94 16 6 C -0.16 -1.21 10.04 -39.56 -0.40 -1.60 16 7 C -0.06 -0.53 9.66 -39.61 -0.38 -0.92 16 8 C -0.14 -1.42 5.26 -104.47 -0.55 -1.97 16 9 C 0.19 2.42 5.46 -5.20 -0.03 2.40 16 10 N -0.75 -10.11 5.55 -66.42 -0.37 -10.48 16 11 C 0.70 12.55 8.53 -86.92 -0.74 11.81 16 12 O -0.59 -13.19 16.00 5.29 0.08 -13.10 16 13 N -0.74 -12.66 5.08 -58.71 -0.30 -12.96 16 14 C 0.17 3.56 2.35 -67.97 -0.16 3.40 16 15 H 0.08 1.76 7.57 -51.93 -0.39 1.36 16 16 C -0.11 -2.24 5.40 -26.64 -0.14 -2.38 16 17 C -0.01 -0.27 5.46 -27.48 -0.15 -0.42 16 18 C -0.49 -13.15 5.44 -98.92 -0.54 -13.69 16 19 C 0.08 2.17 5.43 -17.82 -0.10 2.07 16 20 N -0.88 -25.63 12.81 55.43 0.71 -24.92 16 21 Si 0.88 20.91 27.63 -169.99 -4.70 16.22 16 22 H -0.26 -5.98 6.14 56.52 0.35 -5.64 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.01 0.30 6.00 -27.48 -0.16 0.13 16 26 C -0.11 -2.59 5.50 -26.63 -0.15 -2.74 16 27 H 0.05 0.28 7.65 -51.93 -0.40 -0.12 16 28 H 0.06 0.29 7.67 -51.93 -0.40 -0.11 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.13 0.75 6.30 -52.49 -0.33 0.42 16 31 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 32 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 33 H 0.13 1.01 8.04 -52.48 -0.42 0.59 16 34 H 0.07 1.05 7.86 -51.93 -0.41 0.64 16 35 H 0.07 0.92 8.00 -51.93 -0.42 0.50 16 36 H 0.39 4.41 8.48 -40.82 -0.35 4.07 16 37 H 0.39 5.41 8.62 -40.82 -0.35 5.06 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.03 0.81 5.03 -51.93 -0.26 0.54 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 44 H 0.06 1.59 7.11 -51.93 -0.37 1.23 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -32.94 371.00 -9.78 -42.72 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -7.09 Total: 4.85 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -3.52 Total: -4.57 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.04 Total: -48.36 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: -0.10 Total: -16.45 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.70 Total: 16.22 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.94 -9.78 -42.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186151680.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.005 kcal (2) G-P(sol) polarization free energy of solvation -32.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds