Wall clock time and date at job start Tue Mar 31 2020 12:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35899 * 116.99866 * 2 1 4 4 C 1.38759 * 120.05915 * 0.25266 * 3 2 1 5 5 C 1.38126 * 119.94316 * 180.31345 * 4 3 2 6 6 C 1.38284 * 120.05485 * 359.68674 * 5 4 3 7 7 C 1.38244 * 120.11341 * 0.02562 * 6 5 4 8 8 C 1.38159 * 120.05821 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.03103 * 179.97438 * 8 7 6 10 10 N 1.46493 * 109.47083 * 259.99648 * 9 8 7 11 11 C 1.34777 * 119.99802 * 179.97438 * 10 9 8 12 12 O 1.21587 * 120.00147 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99885 * 180.02562 * 11 10 9 14 14 C 1.46508 * 120.00034 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.40935 * 34.99924 * 14 13 11 16 16 C 1.52956 * 109.41412 * 154.85730 * 14 13 11 17 17 C 1.53226 * 109.40659 * 183.70370 * 16 14 13 18 18 C 1.51274 * 108.53572 * 305.37775 * 17 16 14 19 19 C 1.37881 * 120.84518 * 231.36461 * 18 17 16 20 20 N 1.31518 * 119.99407 * 164.52571 * 19 18 17 21 21 Si 1.86800 * 120.00138 * 344.52590 * 19 18 17 22 22 H 1.48498 * 109.47195 * 354.63891 * 21 19 18 23 23 H 1.48497 * 109.46791 * 114.63837 * 21 19 18 24 24 H 1.48502 * 109.47076 * 234.63694 * 21 19 18 25 25 C 1.51262 * 118.30024 * 51.34491 * 18 17 16 26 26 C 1.52958 * 109.40995 * 275.14350 * 14 13 11 27 27 H 1.08993 * 109.47113 * 300.00053 * 1 2 3 28 28 H 1.08999 * 109.46861 * 59.99933 * 1 2 3 29 29 H 1.08990 * 109.47179 * 179.97438 * 1 2 3 30 30 H 1.07998 * 120.02700 * 0.02562 * 4 3 2 31 31 H 1.07995 * 119.96865 * 179.70275 * 5 4 3 32 32 H 1.08003 * 119.94637 * 180.02562 * 6 5 4 33 33 H 1.08007 * 119.96905 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.46824 * 139.99780 * 9 8 7 35 35 H 1.08992 * 109.46685 * 19.99905 * 9 8 7 36 36 H 0.97004 * 120.00283 * 0.02562 * 10 9 8 37 37 H 0.97004 * 120.00200 * 0.02562 * 13 11 10 38 38 H 1.09003 * 109.48440 * 303.68900 * 16 14 13 39 39 H 1.09003 * 109.48147 * 63.72723 * 16 14 13 40 40 H 1.09002 * 109.62461 * 65.08502 * 17 16 14 41 41 H 1.08992 * 109.63024 * 185.46871 * 17 16 14 42 42 H 0.97005 * 119.99273 * 180.02562 * 20 19 18 43 43 H 1.08998 * 109.62952 * 68.36753 * 25 18 17 44 44 H 1.09002 * 109.62786 * 188.74760 * 25 18 17 45 45 H 1.08999 * 109.48439 * 296.26878 * 26 14 13 46 46 H 1.08998 * 109.48597 * 56.31610 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 0.0053 5 6 1.9209 3.6048 -0.0013 6 6 3.3019 3.6758 -0.0066 7 6 4.0560 2.5171 -0.0058 8 6 3.4312 1.2849 -0.0003 9 6 4.2538 0.0221 -0.0001 10 7 4.3143 -0.5215 -1.3591 11 6 5.0012 -1.6554 -1.6014 12 8 5.5704 -2.2275 -0.6919 13 7 5.0573 -2.1553 -2.8518 14 6 5.8036 -3.3883 -3.1150 15 1 5.7091 -4.0583 -2.2605 16 6 5.2359 -4.0700 -4.3609 17 6 5.9545 -5.4050 -4.5830 18 6 7.4439 -5.1460 -4.6381 19 6 8.2065 -5.6240 -5.6826 20 7 9.4160 -5.1488 -5.8850 21 14 7.5216 -6.9464 -6.8103 22 1 6.2043 -7.4010 -6.2972 23 1 7.3559 -6.3931 -8.1783 24 1 8.4603 -8.0964 -6.8517 25 6 8.0751 -4.3488 -3.5182 26 6 7.2792 -3.0518 -3.3365 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2129 2.3204 0.0098 31 1 1.3340 4.5114 -0.0020 32 1 3.7923 4.6380 -0.0113 33 1 5.1345 2.5752 -0.0104 34 1 3.7949 -0.7103 0.6641 35 1 5.2625 0.2458 0.3470 36 1 3.8605 -0.0649 -2.0848 37 1 4.6036 -1.6987 -3.5774 38 1 4.1696 -4.2497 -4.2231 39 1 5.3873 -3.4271 -5.2280 40 1 5.7311 -6.0825 -3.7589 41 1 5.6222 -5.8481 -5.5217 42 1 9.9523 -5.4849 -6.6201 43 1 8.0479 -4.9285 -2.5956 44 1 9.1087 -4.1145 -3.7729 45 1 7.3812 -2.4336 -4.2284 46 1 7.6622 -2.5094 -2.4721 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001186151680.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:31 Heat of formation + Delta-G solvation = -76.664206 kcal Electronic energy + Delta-G solvation = -26292.495925 eV Core-core repulsion = 22566.825885 eV Total energy + Delta-G solvation = -3725.670040 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.43696 -40.84942 -38.66671 -38.30586 -35.91768 -35.32274 -33.48727 -32.21860 -31.41856 -31.03302 -29.12407 -28.19813 -26.77390 -23.94502 -23.42860 -23.07252 -22.42621 -21.77594 -21.23645 -19.49389 -18.86877 -18.00593 -17.48023 -17.27927 -16.63315 -16.46597 -16.30476 -16.21797 -15.73991 -15.40703 -15.17105 -14.96032 -14.79570 -14.58695 -14.08743 -13.92340 -13.88327 -13.61499 -13.50214 -13.34767 -12.83580 -12.77853 -12.66310 -12.60616 -12.36467 -12.00415 -11.89725 -11.77662 -11.73386 -11.36895 -11.33813 -10.89299 -10.77301 -10.40884 -10.20962 -9.91710 -9.62987 -9.15826 -8.16923 -6.06381 0.23928 0.47380 1.40634 1.46407 1.56574 1.85282 2.23887 2.38789 2.44241 2.80452 3.09737 3.47569 3.64565 3.86267 4.05068 4.07827 4.27002 4.28442 4.35973 4.39892 4.45131 4.53704 4.57459 4.66035 4.74387 4.74493 4.82435 4.92037 5.02814 5.03429 5.06006 5.19411 5.25921 5.28838 5.35857 5.46575 5.51962 5.57823 5.58694 5.61291 5.72429 5.78202 5.85083 5.86049 6.10142 6.37887 6.44999 6.96305 7.19150 7.48662 7.67498 8.95101 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.025651 B = 0.002455 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.296890 B =11401.123592 C =11913.803721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.132 3.868 4 C -0.215 4.215 5 C -0.071 4.071 6 C -0.162 4.162 7 C -0.068 4.068 8 C -0.156 4.156 9 C 0.197 3.803 10 N -0.724 5.724 11 C 0.699 3.301 12 O -0.640 6.640 13 N -0.728 5.728 14 C 0.185 3.815 15 H 0.052 0.948 16 C -0.101 4.101 17 C -0.016 4.016 18 C -0.505 4.505 19 C 0.023 3.977 20 N -0.927 5.927 21 Si 0.941 3.059 22 H -0.242 1.242 23 H -0.279 1.279 24 H -0.291 1.291 25 C 0.008 3.992 26 C -0.099 4.099 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.149 0.851 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.138 0.862 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.406 0.594 37 H 0.407 0.593 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.016 0.984 41 H 0.045 0.955 42 H 0.263 0.737 43 H -0.008 1.008 44 H 0.023 0.977 45 H 0.045 0.955 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.717 19.391 8.973 30.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.086 3.914 4 C -0.233 4.233 5 C -0.089 4.089 6 C -0.180 4.180 7 C -0.086 4.086 8 C -0.157 4.157 9 C 0.073 3.927 10 N -0.380 5.380 11 C 0.399 3.601 12 O -0.522 6.522 13 N -0.382 5.382 14 C 0.080 3.920 15 H 0.071 0.929 16 C -0.140 4.140 17 C -0.054 4.054 18 C -0.524 4.524 19 C -0.175 4.175 20 N -0.566 5.566 21 Si 0.766 3.234 22 H -0.165 1.165 23 H -0.205 1.205 24 H -0.217 1.217 25 C -0.030 4.030 26 C -0.139 4.139 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.125 0.875 30 H 0.167 0.833 31 H 0.170 0.830 32 H 0.165 0.835 33 H 0.156 0.844 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.242 0.758 37 H 0.243 0.757 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.034 0.966 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.010 0.990 44 H 0.042 0.958 45 H 0.064 0.936 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -20.989 18.656 9.703 29.711 hybrid contribution -0.030 -0.329 -1.056 1.106 sum -21.019 18.327 8.648 29.197 Atomic orbital electron populations 1.23308 0.76611 1.05129 1.02443 1.86145 1.23276 1.27046 1.88246 1.19089 0.91694 0.85100 0.95548 1.21518 1.01143 0.91870 1.08811 1.21380 0.94880 0.97756 0.94921 1.21374 0.94286 0.98846 1.03521 1.21166 1.00853 0.90812 0.95788 1.19193 0.90847 0.95026 1.10611 1.19658 0.98459 0.91835 0.82749 1.44962 1.56179 1.25568 1.11329 1.16170 0.79524 0.81109 0.83299 1.90879 1.52801 1.63059 1.45426 1.45199 1.56640 1.28390 1.08005 1.20485 0.90115 0.83736 0.97631 0.92930 1.21704 0.98496 0.97988 0.95790 1.19748 0.93931 0.93995 0.97696 1.20561 0.93172 1.32471 1.06205 1.25672 0.95201 0.98087 0.98570 1.70068 1.12470 1.42424 1.31638 0.85797 0.79485 0.79577 0.78564 1.16539 1.20451 1.21725 1.19316 0.96391 0.92791 0.94466 1.21750 0.95765 0.98379 0.97971 0.91394 0.91297 0.87477 0.83349 0.82975 0.83521 0.84431 0.92773 0.91790 0.75833 0.75694 0.91111 0.91828 0.96567 0.93673 0.92794 0.98987 0.95830 0.93593 0.95854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -6.55 9.74 -92.41 -0.90 -7.45 16 3 C 0.13 2.42 6.66 22.51 0.15 2.57 16 4 C -0.21 -2.83 9.04 22.37 0.20 -2.62 16 5 C -0.07 -0.78 10.04 22.25 0.22 -0.56 16 6 C -0.16 -2.00 10.04 22.28 0.22 -1.77 16 7 C -0.07 -1.09 9.66 22.25 0.22 -0.88 16 8 C -0.16 -3.10 5.26 -19.77 -0.10 -3.21 16 9 C 0.20 5.04 5.46 85.64 0.47 5.51 16 10 N -0.72 -19.26 5.55 -482.31 -2.68 -21.94 16 11 C 0.70 24.85 8.53 179.05 1.53 26.38 16 12 O -0.64 -29.17 16.00 -3.99 -0.06 -29.23 16 13 N -0.73 -23.97 5.08 -457.93 -2.33 -26.29 16 14 C 0.19 7.55 2.35 44.96 0.11 7.65 16 15 H 0.05 2.43 7.57 -2.39 -0.02 2.41 16 16 C -0.10 -3.83 5.40 30.66 0.17 -3.67 16 17 C -0.02 -0.70 5.46 30.11 0.16 -0.54 16 18 C -0.51 -27.14 5.44 -16.17 -0.09 -27.23 16 19 C 0.02 1.30 5.43 84.66 0.46 1.76 16 20 N -0.93 -55.26 12.81 21.45 0.27 -54.99 16 21 Si 0.94 42.62 27.63 68.60 1.90 44.52 16 22 H -0.24 -10.10 6.14 99.48 0.61 -9.49 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 C 0.01 0.46 6.00 30.11 0.18 0.64 16 26 C -0.10 -4.68 5.50 30.66 0.17 -4.52 16 27 H 0.07 0.54 7.65 -2.39 -0.02 0.52 16 28 H 0.07 0.54 7.67 -2.39 -0.02 0.53 16 29 H 0.11 0.98 8.14 -2.39 -0.02 0.97 16 30 H 0.15 1.25 6.30 -2.91 -0.02 1.23 16 31 H 0.15 0.80 8.06 -2.91 -0.02 0.77 16 32 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 33 H 0.14 1.97 8.04 -2.91 -0.02 1.95 16 34 H 0.05 1.60 7.86 -2.39 -0.02 1.58 16 35 H 0.06 1.71 8.00 -2.39 -0.02 1.69 16 36 H 0.41 8.54 8.48 -92.71 -0.79 7.75 16 37 H 0.41 10.33 8.62 -92.71 -0.80 9.53 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.04 1.93 5.03 -2.39 -0.01 1.92 16 42 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 43 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 44 H 0.02 1.39 7.11 -2.39 -0.02 1.38 16 45 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -73.58 371.00 0.70 -72.88 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -0.68 Total: 21.66 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 5.17 Total: 0.85 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -4.73 Total: -103.22 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.96 Total: -36.69 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.90 Total: 44.52 kcal Total: -73.58 0.70 -72.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186151680.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.786 kcal (2) G-P(sol) polarization free energy of solvation -73.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds