Wall clock time and date at job start Tue Mar 31 2020 12:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35895 * 117.00128 * 2 1 4 4 C 1.38759 * 120.05370 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94113 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.05768 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.10982 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.96749 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.46953 * 90.00235 * 8 7 6 10 10 C 1.34776 * 119.99732 * 179.97438 * 9 8 7 11 11 O 1.21589 * 120.00316 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99655 * 180.02562 * 10 9 8 13 13 C 1.46508 * 119.99813 * 179.97438 * 12 10 9 14 14 H 1.09006 * 109.41225 * 35.14235 * 13 12 10 15 15 C 1.52957 * 109.41362 * 154.99878 * 13 12 10 16 16 C 1.53224 * 109.40451 * 183.70442 * 15 13 12 17 17 C 1.51263 * 108.53924 * 305.37118 * 16 15 13 18 18 C 1.37877 * 120.85402 * 231.37097 * 17 16 15 19 19 N 1.31512 * 119.99779 * 359.97438 * 18 17 16 20 20 Si 1.86798 * 120.00267 * 180.02562 * 18 17 16 21 21 H 1.48496 * 109.46947 * 89.99875 * 20 18 17 22 22 H 1.48499 * 109.47336 * 209.99927 * 20 18 17 23 23 H 1.48504 * 109.46903 * 330.00121 * 20 18 17 24 24 C 1.51275 * 118.29724 * 51.34794 * 17 16 15 25 25 C 1.52957 * 109.41605 * 275.35161 * 13 12 10 26 26 C 1.38164 * 120.05645 * 359.97438 * 7 6 5 27 27 H 1.08997 * 109.46965 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46735 * 300.00020 * 1 2 3 29 29 H 1.09002 * 109.46782 * 59.99820 * 1 2 3 30 30 H 1.07998 * 120.02758 * 0.02562 * 4 3 2 31 31 H 1.07995 * 119.97120 * 179.97438 * 5 4 3 32 32 H 1.07995 * 119.94278 * 180.27458 * 6 5 4 33 33 H 1.09005 * 109.46935 * 209.99986 * 8 7 6 34 34 H 1.08996 * 109.47306 * 330.00260 * 8 7 6 35 35 H 0.96996 * 120.00374 * 359.97438 * 9 8 7 36 36 H 0.96996 * 120.00451 * 359.97438 * 12 10 9 37 37 H 1.09010 * 109.48303 * 303.68503 * 15 13 12 38 38 H 1.09001 * 109.48470 * 63.72399 * 15 13 12 39 39 H 1.08998 * 109.62606 * 65.09252 * 16 15 13 40 40 H 1.09008 * 109.62507 * 185.46163 * 16 15 13 41 41 H 0.97000 * 120.00555 * 180.02562 * 19 18 17 42 42 H 1.09001 * 109.62628 * 68.36655 * 24 17 16 43 43 H 1.09000 * 109.62416 * 188.74316 * 24 17 16 44 44 H 1.08996 * 109.48504 * 296.27893 * 25 13 12 45 45 H 1.09001 * 109.47800 * 56.31158 * 25 13 12 46 46 H 1.08001 * 120.02548 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3020 3.6758 -0.0005 7 6 4.0560 2.5170 0.0000 8 6 5.5608 2.5982 0.0000 9 7 6.0484 2.6250 1.3812 10 6 7.3716 2.6959 1.6275 11 8 8.1606 2.7372 0.7033 12 7 7.8201 2.7201 2.8982 13 6 9.2585 2.7966 3.1659 14 1 9.7362 3.4145 2.4054 15 6 9.4867 3.4197 4.5441 16 6 10.9908 3.5848 4.7854 17 6 11.6594 2.2421 4.5900 18 6 12.5047 1.7268 5.5497 19 7 12.7389 2.4046 6.6521 20 14 13.3184 0.0666 5.2834 21 1 14.6202 0.2581 4.5951 22 1 13.5444 -0.5902 6.5960 23 1 12.4375 -0.7880 4.4474 24 6 11.3765 1.4789 3.3149 25 6 9.8585 1.3902 3.1269 26 6 3.4311 1.2848 0.0005 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 0.2128 2.3203 -0.0005 31 1 1.3341 4.5113 -0.0019 32 1 3.7923 4.6380 0.0035 33 1 5.9715 1.7288 -0.5135 34 1 5.8758 3.5062 -0.5142 35 1 5.4190 2.5918 2.1185 36 1 7.1907 2.6869 3.6355 37 1 9.0024 4.3954 4.5867 38 1 9.0645 2.7703 5.3111 39 1 11.3988 4.3039 4.0751 40 1 11.1618 3.9376 5.8025 41 1 13.3339 2.0424 7.3271 42 1 11.8202 2.0030 2.4684 43 1 11.7986 0.4765 3.3869 44 1 9.4276 0.7888 3.9273 45 1 9.6376 0.9274 2.1651 46 1 4.0207 0.3799 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001186217965.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:35 Heat of formation + Delta-G solvation = -56.756977 kcal Electronic energy + Delta-G solvation = -25792.379883 eV Core-core repulsion = 22067.573084 eV Total energy + Delta-G solvation = -3724.806798 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.58085 -39.70252 -38.07108 -36.83918 -34.62856 -33.61651 -31.87633 -31.19180 -30.56028 -29.60146 -27.81014 -27.28122 -25.71517 -22.91964 -22.28524 -21.48974 -21.35503 -20.43734 -19.46527 -18.52121 -17.68982 -16.67372 -16.36414 -16.23571 -16.10872 -15.86464 -15.12692 -14.58849 -14.40088 -14.33134 -14.15645 -13.88314 -13.34719 -13.17089 -12.95987 -12.79348 -12.57276 -12.33164 -12.22561 -12.03364 -11.86586 -11.56262 -11.48996 -11.18268 -10.94113 -10.78575 -10.66258 -10.14420 -9.98651 -9.83144 -9.48588 -9.27664 -9.07103 -8.93419 -8.73390 -8.58109 -8.44962 -8.16487 -6.06986 -3.97241 0.83387 1.07893 2.84180 2.98962 3.31097 3.38900 3.40931 3.50025 3.57564 4.34145 4.39589 4.42071 4.61869 4.65822 4.70386 4.70813 4.95932 4.97032 5.05265 5.13781 5.21069 5.42344 5.59483 5.69703 5.79234 5.89955 5.96806 6.04511 6.24592 6.27770 6.35553 6.53724 6.54540 6.57998 6.77485 6.82815 6.95878 6.99917 7.01883 7.14129 7.23459 7.39899 7.50596 7.69286 7.75919 7.84987 8.36160 8.42523 8.96320 8.99720 9.58208 11.02510 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.024252 B = 0.002216 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.264642 B =12634.658885 C =13084.384854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.123 3.877 4 C -0.204 4.204 5 C -0.083 4.083 6 C -0.137 4.137 7 C -0.064 4.064 8 C 0.181 3.819 9 N -0.750 5.750 10 C 0.701 3.299 11 O -0.592 6.592 12 N -0.739 5.739 13 C 0.172 3.828 14 H 0.077 0.923 15 C -0.113 4.113 16 C 0.013 3.987 17 C -0.486 4.486 18 C 0.075 3.925 19 N -0.892 5.892 20 Si 0.887 3.113 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.264 1.264 24 C -0.020 4.020 25 C -0.113 4.113 26 C -0.132 4.132 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.394 0.606 36 H 0.389 0.611 37 H 0.035 0.965 38 H 0.053 0.947 39 H 0.006 0.994 40 H 0.060 0.940 41 H 0.263 0.737 42 H 0.019 0.981 43 H 0.035 0.965 44 H 0.049 0.951 45 H 0.037 0.963 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.242 -0.276 -11.225 28.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.078 3.922 4 C -0.223 4.223 5 C -0.101 4.101 6 C -0.156 4.156 7 C -0.065 4.065 8 C 0.057 3.943 9 N -0.407 5.407 10 C 0.401 3.599 11 O -0.470 6.470 12 N -0.392 5.392 13 C 0.069 3.931 14 H 0.095 0.905 15 C -0.152 4.152 16 C -0.025 4.025 17 C -0.505 4.505 18 C -0.127 4.127 19 N -0.530 5.530 20 Si 0.715 3.285 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.189 1.189 24 C -0.058 4.058 25 C -0.152 4.152 26 C -0.151 4.151 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.228 0.772 36 H 0.222 0.778 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.025 0.975 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.055 0.945 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -25.281 -0.427 -11.913 27.950 hybrid contribution -0.599 -0.842 0.669 1.231 sum -25.880 -1.269 -11.244 28.246 Atomic orbital electron populations 1.23066 0.78307 1.04064 1.01322 1.86094 1.21431 1.26854 1.88686 1.19006 0.92262 0.84248 0.96644 1.21287 1.00072 0.92454 1.08448 1.20949 0.94539 0.97049 0.97524 1.21062 0.93701 0.98226 1.02569 1.19733 0.95250 0.92446 0.99071 1.19953 0.87711 1.03256 0.83353 1.45149 1.05972 1.81620 1.07930 1.16022 0.81872 0.77899 0.84121 1.90914 1.54678 1.57955 1.43435 1.45633 1.09762 1.78718 1.05079 1.20924 0.76312 0.97767 0.98139 0.90460 1.21934 1.01576 0.97482 0.94212 1.19338 0.88506 0.95747 0.98899 1.20066 1.26051 1.03209 1.01141 1.24844 0.95918 0.97320 0.94664 1.69835 1.36610 1.38356 1.08176 0.86677 0.79932 0.84737 0.77125 1.20414 1.21741 1.18925 1.19797 0.91498 0.97248 0.97220 1.21895 0.99150 0.95322 0.98813 1.20394 0.91358 0.98419 1.04927 0.88157 0.92602 0.92648 0.85478 0.85560 0.85452 0.90690 0.90580 0.77230 0.77821 0.94655 0.92799 0.97535 0.92143 0.92662 0.96258 0.94697 0.93248 0.94462 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.88 10.50 -19.41 -0.20 -3.08 16 3 C 0.12 1.15 6.69 -39.21 -0.26 0.88 16 4 C -0.20 -1.56 9.04 -39.43 -0.36 -1.91 16 5 C -0.08 -0.61 10.04 -39.60 -0.40 -1.00 16 6 C -0.14 -1.13 9.70 -39.56 -0.38 -1.52 16 7 C -0.06 -0.60 5.25 -104.65 -0.55 -1.15 16 8 C 0.18 2.02 5.80 -5.19 -0.03 1.99 16 9 N -0.75 -9.20 5.55 -66.41 -0.37 -9.56 16 10 C 0.70 11.77 8.53 -86.92 -0.74 11.03 16 11 O -0.59 -12.49 16.01 5.29 0.08 -12.40 16 12 N -0.74 -12.08 5.08 -58.71 -0.30 -12.38 16 13 C 0.17 3.46 2.35 -67.97 -0.16 3.30 16 14 H 0.08 1.73 7.58 -51.93 -0.39 1.34 16 15 C -0.11 -2.34 5.40 -26.64 -0.14 -2.48 16 16 C 0.01 0.32 5.96 -27.49 -0.16 0.16 16 17 C -0.49 -12.88 5.51 -98.92 -0.55 -13.43 16 18 C 0.07 2.06 5.46 -17.82 -0.10 1.96 16 19 N -0.89 -25.62 12.73 55.43 0.71 -24.92 16 20 Si 0.89 21.35 27.53 -169.99 -4.68 16.67 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.26 -6.19 6.11 56.52 0.35 -5.85 16 24 C -0.02 -0.47 5.59 -27.49 -0.15 -0.63 16 25 C -0.11 -2.45 5.50 -26.64 -0.15 -2.60 16 26 C -0.13 -1.29 9.64 -39.43 -0.38 -1.67 16 27 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 29 H 0.05 0.22 7.66 -51.93 -0.40 -0.18 16 30 H 0.13 0.69 6.30 -52.49 -0.33 0.36 16 31 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.08 0.87 8.08 -51.93 -0.42 0.45 16 35 H 0.39 3.91 8.48 -40.82 -0.35 3.56 16 36 H 0.39 5.18 8.61 -40.82 -0.35 4.83 16 37 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.01 0.16 8.14 -51.93 -0.42 -0.27 16 40 H 0.06 1.62 7.08 -51.92 -0.37 1.25 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.03 0.84 4.59 -51.93 -0.24 0.60 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -32.35 371.60 -9.76 -42.11 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.08 Total: 3.91 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -3.52 Total: -5.94 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.04 Total: -46.86 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.12 Total: -15.48 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.68 Total: 16.67 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.35 -9.76 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001186217965.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.648 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds