Wall clock time and date at job start Tue Mar 31 2020 12:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35708 * 117.00044 * 2 1 4 4 C 1.38999 * 119.91320 * 180.02562 * 3 2 1 5 5 C 1.37704 * 120.08933 * 180.02562 * 4 3 2 6 6 C 1.39725 * 119.91053 * 359.97438 * 5 4 3 7 7 C 1.47608 * 120.08873 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99472 * 324.75399 * 7 6 5 9 9 N 1.34776 * 120.00169 * 144.47998 * 7 6 5 10 10 C 1.46919 * 120.62902 * 174.55065 * 9 7 6 11 11 C 1.53631 * 108.54397 * 126.36839 * 10 9 7 12 12 C 1.53040 * 109.24138 * 54.84980 * 11 10 9 13 13 C 1.53001 * 109.45855 * 178.49190 * 12 11 10 14 14 N 1.46497 * 109.47236 * 295.07220 * 13 12 11 15 15 C 1.36934 * 120.00197 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00152 * 0.02562 * 15 14 13 17 17 C 1.38812 * 120.00110 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00562 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99872 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47390 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47316 * 120.00427 * 19 17 15 22 22 H 1.48501 * 109.47509 * 240.00041 * 19 17 15 23 23 C 1.53037 * 109.54428 * 298.51695 * 12 11 10 24 24 C 1.46927 * 120.63030 * 354.82819 * 9 7 6 25 25 C 1.39733 * 119.82795 * 0.24966 * 6 5 4 26 26 C 1.37709 * 119.90814 * 359.49094 * 25 6 5 27 27 H 1.08996 * 109.47338 * 299.99856 * 1 2 3 28 28 H 1.09008 * 109.47153 * 59.99976 * 1 2 3 29 29 H 1.09001 * 109.46888 * 179.97438 * 1 2 3 30 30 H 1.08006 * 119.95294 * 359.97438 * 4 3 2 31 31 H 1.08006 * 120.04238 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.59104 * 246.19992 * 10 9 7 33 33 H 1.09004 * 109.59031 * 6.62853 * 10 9 7 34 34 H 1.08999 * 109.62926 * 294.86553 * 11 10 9 35 35 H 1.08999 * 109.45807 * 174.74503 * 11 10 9 36 36 H 1.09008 * 109.44337 * 58.53349 * 12 11 10 37 37 H 1.08998 * 109.46970 * 55.07172 * 13 12 11 38 38 H 1.09002 * 109.47148 * 175.07511 * 13 12 11 39 39 H 0.97007 * 120.00160 * 0.02562 * 14 13 12 40 40 H 0.96998 * 120.00590 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.49093 * 301.41197 * 23 12 11 42 42 H 1.08991 * 109.52435 * 181.33276 * 23 12 11 43 43 H 1.09006 * 109.58963 * 353.37450 * 24 9 7 44 44 H 1.08997 * 109.58366 * 113.65712 * 24 9 7 45 45 H 1.07993 * 120.05052 * 179.75560 * 25 6 5 46 46 H 1.07996 * 119.95547 * 180.24885 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4333 1.2798 -0.0005 5 6 4.0622 2.5048 0.0000 6 6 3.3030 3.6778 0.0005 7 6 3.9731 4.9930 0.0017 8 8 5.0150 5.1438 0.6098 9 7 3.4328 6.0252 -0.6759 10 6 4.0216 7.3684 -0.5881 11 6 4.2990 7.8744 -2.0119 12 6 3.0084 7.8064 -2.8317 13 6 3.2701 8.3445 -4.2398 14 7 3.6084 9.7679 -4.1637 15 6 3.8853 10.4680 -5.3075 16 1 3.8540 9.9709 -6.2658 17 6 4.2053 11.8168 -5.2354 18 7 4.2430 12.4228 -4.0676 19 14 4.5838 12.7716 -6.7957 20 1 4.4747 11.8670 -7.9684 21 1 3.6151 13.8879 -6.9402 22 1 5.9620 13.3192 -6.7189 23 6 2.5343 6.3541 -2.9207 24 6 2.2403 5.8298 -1.5117 25 6 1.9077 3.6026 0.0058 26 6 1.2863 2.3737 -0.0001 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0194 0.3726 -0.0005 31 1 5.1409 2.5588 0.0000 32 1 3.3248 8.0409 -0.0877 33 1 4.9549 7.3224 -0.0269 34 1 5.0606 7.2509 -2.4802 35 1 4.6490 8.9057 -1.9690 36 1 2.2399 8.4104 -2.3492 37 1 4.0989 7.7977 -4.6895 38 1 2.3761 8.2157 -4.8500 39 1 3.6369 10.2143 -3.3029 40 1 4.4670 13.3652 -4.0172 41 1 3.3126 5.7450 -3.3805 42 1 1.6283 6.3030 -3.5244 43 1 1.9978 4.7682 -1.5600 44 1 1.4005 6.3773 -1.0837 45 1 1.3174 4.5069 0.0102 46 1 0.2079 2.3147 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206891443.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:49 Heat of formation + Delta-G solvation = -29.902103 kcal Electronic energy + Delta-G solvation = -26300.164406 eV Core-core repulsion = 22576.522123 eV Total energy + Delta-G solvation = -3723.642284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.94385 -39.92900 -37.92777 -37.20139 -34.99315 -32.94331 -31.85632 -31.12668 -30.62396 -30.00381 -27.87491 -26.69774 -24.27769 -23.64214 -23.13064 -22.41745 -21.65705 -20.35416 -19.34248 -18.47717 -17.60147 -16.96470 -16.71486 -16.22163 -15.93449 -15.20752 -15.07775 -14.75603 -14.42414 -14.29842 -14.14316 -13.84943 -13.66566 -13.58595 -13.27862 -12.98875 -12.91404 -12.66637 -12.38600 -12.31134 -12.13387 -11.77860 -11.50099 -11.22691 -11.14518 -10.97025 -10.84411 -10.44988 -10.34722 -10.17270 -9.94974 -9.88738 -9.64584 -9.37026 -8.86822 -8.70768 -8.49353 -6.90409 -5.75956 -3.04091 0.68588 0.94875 2.64550 2.78895 2.94579 3.43708 3.48433 3.49433 3.51602 4.29731 4.36203 4.45489 4.59197 4.62752 4.68913 4.77779 4.90695 4.96090 5.01896 5.05390 5.08229 5.21780 5.25837 5.36715 5.48398 5.56400 5.58860 5.62890 5.74613 5.81452 5.85768 5.93893 5.97950 6.07442 6.13887 6.17798 6.26613 6.30565 6.41744 6.52455 6.70808 6.81494 6.90465 6.93014 7.37048 7.71348 8.11662 8.43309 9.54459 10.12872 10.47400 11.47080 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026944 B = 0.002334 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.952478 B =11992.660447 C =12552.316648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.148 3.852 4 C -0.159 4.159 5 C -0.024 4.024 6 C -0.166 4.166 7 C 0.561 3.439 8 O -0.542 6.542 9 N -0.602 5.602 10 C 0.111 3.889 11 C -0.123 4.123 12 C -0.094 4.094 13 C 0.158 3.842 14 N -0.732 5.732 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C -0.127 4.127 24 C 0.094 3.906 25 C -0.050 4.050 26 C -0.217 4.217 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.137 0.863 31 H 0.140 0.860 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.138 0.862 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.436 -24.828 10.261 28.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.102 3.898 4 C -0.178 4.178 5 C -0.043 4.043 6 C -0.169 4.169 7 C 0.350 3.650 8 O -0.420 6.420 9 N -0.335 5.335 10 C -0.011 4.011 11 C -0.161 4.161 12 C -0.113 4.113 13 C 0.031 3.969 14 N -0.376 5.376 15 C -0.369 4.369 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.166 4.166 24 C -0.028 4.028 25 C -0.068 4.068 26 C -0.236 4.236 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.035 0.965 38 H 0.036 0.964 39 H 0.218 0.782 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.089 0.911 45 H 0.156 0.844 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.780 -24.884 10.397 28.362 hybrid contribution -0.166 0.962 -0.677 1.188 sum -8.947 -23.922 9.720 27.328 Atomic orbital electron populations 1.23126 0.77969 1.04237 1.01681 1.86045 1.21768 1.26924 1.88027 1.19287 0.92409 0.84216 0.93910 1.20392 0.91277 0.98688 1.07409 1.21027 1.00468 0.89948 0.92842 1.19837 0.93809 0.93764 1.09519 1.18224 0.84133 0.83683 0.78945 1.90777 1.22840 1.83737 1.44659 1.48040 1.29808 1.09299 1.46328 1.21843 0.99535 0.81281 0.98451 1.21989 0.97848 1.02785 0.93513 1.21315 0.97370 0.94829 0.97793 1.20664 0.96928 0.86678 0.92649 1.42386 1.83754 1.04324 1.07179 1.19274 1.38726 0.91712 0.87152 0.91223 1.24737 1.02801 0.96856 0.96729 1.69660 1.55703 1.10539 1.22355 0.86124 0.77578 0.79976 0.82556 1.20602 1.21910 1.21879 1.21924 1.02049 0.97078 0.95504 1.22266 0.87138 1.02141 0.91277 1.21318 0.93367 0.97850 0.94275 1.21184 1.00346 0.91953 1.10120 0.92377 0.92282 0.88038 0.84491 0.84249 0.91298 0.89055 0.91798 0.89400 0.90994 0.96457 0.96434 0.78247 0.93583 0.91458 0.90586 0.88876 0.91138 0.84413 0.84782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.55 10.48 -18.83 -0.20 -2.74 16 3 C 0.15 1.30 6.70 -39.02 -0.26 1.04 16 4 C -0.16 -1.45 9.97 -39.49 -0.39 -1.85 16 5 C -0.02 -0.25 9.60 -39.22 -0.38 -0.63 16 6 C -0.17 -1.88 5.29 -104.96 -0.56 -2.43 16 7 C 0.56 7.87 7.37 -12.44 -0.09 7.77 16 8 O -0.54 -9.45 16.24 5.29 0.09 -9.37 16 9 N -0.60 -7.73 2.97 -173.70 -0.52 -8.24 16 10 C 0.11 1.55 6.47 -3.49 -0.02 1.52 16 11 C -0.12 -1.94 5.26 -26.38 -0.14 -2.08 16 12 C -0.09 -1.45 2.19 -90.58 -0.20 -1.65 16 13 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 14 N -0.73 -18.37 5.32 -59.91 -0.32 -18.69 16 15 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 16 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 17 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 18 N -0.93 -28.24 13.06 55.49 0.72 -27.52 16 19 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 C -0.13 -1.52 5.36 -26.61 -0.14 -1.67 16 24 C 0.09 0.97 4.78 -3.71 -0.02 0.95 16 25 C -0.05 -0.44 7.34 -39.22 -0.29 -0.73 16 26 C -0.22 -1.69 9.01 -39.49 -0.36 -2.05 16 27 H 0.06 0.20 7.65 -51.93 -0.40 -0.20 16 28 H 0.06 0.21 7.65 -51.92 -0.40 -0.19 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.14 1.03 8.06 -52.48 -0.42 0.60 16 31 H 0.14 1.41 8.00 -52.48 -0.42 0.99 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.09 1.38 7.00 -51.93 -0.36 1.01 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.58 7.15 -51.93 -0.37 1.21 16 36 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 10.03 6.84 -40.82 -0.28 9.75 16 40 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.82 4.43 -51.93 -0.23 0.59 16 44 H 0.07 0.63 8.06 -51.93 -0.42 0.21 16 45 H 0.14 1.02 6.05 -52.49 -0.32 0.70 16 46 H 0.13 0.71 6.28 -52.49 -0.33 0.38 16 LS Contribution 367.66 15.07 5.54 5.54 Total: -1.00 -33.89 367.66 -8.70 -42.58 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.87 Total: 5.87 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.12 Total: -4.94 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.11 Total: -54.45 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.11 Total: -12.11 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.89 -8.70 -42.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206891443.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.681 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds