Wall clock time and date at job start Tue Mar 31 2020 12:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35708 * 117.00044 * 2 1 4 4 C 1.38999 * 119.91320 * 180.02562 * 3 2 1 5 5 C 1.37704 * 120.08933 * 180.02562 * 4 3 2 6 6 C 1.39725 * 119.91053 * 359.97438 * 5 4 3 7 7 C 1.47608 * 120.08873 * 179.97438 * 6 5 4 8 8 O 1.21582 * 119.99472 * 324.75399 * 7 6 5 9 9 N 1.34776 * 120.00169 * 144.47998 * 7 6 5 10 10 C 1.46919 * 120.62902 * 174.55065 * 9 7 6 11 11 C 1.53631 * 108.54397 * 126.36839 * 10 9 7 12 12 C 1.53040 * 109.24138 * 54.84980 * 11 10 9 13 13 C 1.53001 * 109.45855 * 178.49190 * 12 11 10 14 14 N 1.46497 * 109.47236 * 295.07220 * 13 12 11 15 15 C 1.36934 * 120.00197 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00152 * 0.02562 * 15 14 13 17 17 C 1.38812 * 120.00110 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00562 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99872 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47390 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47316 * 120.00427 * 19 17 15 22 22 H 1.48501 * 109.47509 * 240.00041 * 19 17 15 23 23 C 1.53037 * 109.54428 * 298.51695 * 12 11 10 24 24 C 1.46927 * 120.63030 * 354.82819 * 9 7 6 25 25 C 1.39733 * 119.82795 * 0.24966 * 6 5 4 26 26 C 1.37709 * 119.90814 * 359.49094 * 25 6 5 27 27 H 1.08996 * 109.47338 * 299.99856 * 1 2 3 28 28 H 1.09008 * 109.47153 * 59.99976 * 1 2 3 29 29 H 1.09001 * 109.46888 * 179.97438 * 1 2 3 30 30 H 1.08006 * 119.95294 * 359.97438 * 4 3 2 31 31 H 1.08006 * 120.04238 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.59104 * 246.19992 * 10 9 7 33 33 H 1.09004 * 109.59031 * 6.62853 * 10 9 7 34 34 H 1.08999 * 109.62926 * 294.86553 * 11 10 9 35 35 H 1.08999 * 109.45807 * 174.74503 * 11 10 9 36 36 H 1.09008 * 109.44337 * 58.53349 * 12 11 10 37 37 H 1.08998 * 109.46970 * 55.07172 * 13 12 11 38 38 H 1.09002 * 109.47148 * 175.07511 * 13 12 11 39 39 H 0.97007 * 120.00160 * 0.02562 * 14 13 12 40 40 H 0.96998 * 120.00590 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.49093 * 301.41197 * 23 12 11 42 42 H 1.08991 * 109.52435 * 181.33276 * 23 12 11 43 43 H 1.09006 * 109.58963 * 353.37450 * 24 9 7 44 44 H 1.08997 * 109.58366 * 113.65712 * 24 9 7 45 45 H 1.07993 * 120.05052 * 179.75560 * 25 6 5 46 46 H 1.07996 * 119.95547 * 180.24885 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4333 1.2798 -0.0005 5 6 4.0622 2.5048 0.0000 6 6 3.3030 3.6778 0.0005 7 6 3.9731 4.9930 0.0017 8 8 5.0150 5.1438 0.6098 9 7 3.4328 6.0252 -0.6759 10 6 4.0216 7.3684 -0.5881 11 6 4.2990 7.8744 -2.0119 12 6 3.0084 7.8064 -2.8317 13 6 3.2701 8.3445 -4.2398 14 7 3.6084 9.7679 -4.1637 15 6 3.8853 10.4680 -5.3075 16 1 3.8540 9.9709 -6.2658 17 6 4.2053 11.8168 -5.2354 18 7 4.2430 12.4228 -4.0676 19 14 4.5838 12.7716 -6.7957 20 1 4.4747 11.8670 -7.9684 21 1 3.6151 13.8879 -6.9402 22 1 5.9620 13.3192 -6.7189 23 6 2.5343 6.3541 -2.9207 24 6 2.2403 5.8298 -1.5117 25 6 1.9077 3.6026 0.0058 26 6 1.2863 2.3737 -0.0001 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0194 0.3726 -0.0005 31 1 5.1409 2.5588 0.0000 32 1 3.3248 8.0409 -0.0877 33 1 4.9549 7.3224 -0.0269 34 1 5.0606 7.2509 -2.4802 35 1 4.6490 8.9057 -1.9690 36 1 2.2399 8.4104 -2.3492 37 1 4.0989 7.7977 -4.6895 38 1 2.3761 8.2157 -4.8500 39 1 3.6369 10.2143 -3.3029 40 1 4.4670 13.3652 -4.0172 41 1 3.3126 5.7450 -3.3805 42 1 1.6283 6.3030 -3.5244 43 1 1.9978 4.7682 -1.5600 44 1 1.4005 6.3773 -1.0837 45 1 1.3174 4.5069 0.0102 46 1 0.2079 2.3147 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206891443.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:18:48 Heat of formation + Delta-G solvation = -51.374837 kcal Electronic energy + Delta-G solvation = -26301.095534 eV Core-core repulsion = 22576.522123 eV Total energy + Delta-G solvation = -3724.573411 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.79318 -40.71490 -39.02048 -38.03804 -36.60527 -34.55042 -32.82527 -32.24134 -31.91567 -30.99815 -28.49808 -28.00171 -25.77711 -24.73047 -24.20527 -23.29277 -22.94773 -21.52092 -20.39875 -19.22267 -19.06235 -18.35667 -17.52095 -16.89836 -16.70958 -16.65802 -16.19684 -15.79806 -15.61734 -15.42296 -15.40080 -15.15885 -14.77000 -14.59759 -14.34368 -14.16654 -13.85963 -13.71210 -13.59782 -13.31932 -13.07293 -12.91337 -12.80564 -12.76695 -12.25832 -12.11722 -12.05407 -11.92896 -11.81415 -11.65896 -11.43827 -11.40049 -10.94968 -10.88685 -10.05798 -9.73561 -9.23780 -8.98337 -7.95279 -5.23336 -0.06872 0.28750 1.46730 1.47529 1.57524 1.67712 1.95897 2.30931 2.55770 2.72366 3.38251 3.45466 3.70515 3.75758 3.84493 3.87482 3.91278 4.07587 4.17561 4.28995 4.30175 4.34472 4.44011 4.45533 4.46676 4.55683 4.61046 4.71874 4.77049 4.79620 4.86599 4.95856 4.97649 4.98608 5.08415 5.09644 5.15950 5.20891 5.25839 5.36569 5.47583 5.53813 5.55955 5.62103 6.27652 6.35129 6.37474 7.07124 7.33970 8.11152 8.34139 9.28397 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026944 B = 0.002334 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.952478 B =11992.660447 C =12552.316648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.329 6.329 3 C 0.148 3.852 4 C -0.166 4.166 5 C -0.035 4.035 6 C -0.187 4.187 7 C 0.558 3.442 8 O -0.589 6.589 9 N -0.601 5.601 10 C 0.118 3.882 11 C -0.115 4.115 12 C -0.083 4.083 13 C 0.156 3.844 14 N -0.744 5.744 15 C -0.243 4.243 16 H 0.074 0.926 17 C -0.077 4.077 18 N -0.969 5.969 19 Si 0.972 3.028 20 H -0.267 1.267 21 H -0.292 1.292 22 H -0.295 1.295 23 C -0.120 4.120 24 C 0.095 3.905 25 C -0.044 4.044 26 C -0.209 4.209 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.118 0.882 30 H 0.147 0.853 31 H 0.130 0.870 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.010 0.990 38 H 0.026 0.974 39 H 0.375 0.625 40 H 0.251 0.749 41 H 0.059 0.941 42 H 0.100 0.900 43 H 0.116 0.884 44 H 0.096 0.904 45 H 0.158 0.842 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.223 -26.693 9.743 30.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.242 6.242 3 C 0.101 3.899 4 C -0.184 4.184 5 C -0.054 4.054 6 C -0.190 4.190 7 C 0.349 3.651 8 O -0.470 6.470 9 N -0.332 5.332 10 C -0.004 4.004 11 C -0.153 4.153 12 C -0.102 4.102 13 C 0.030 3.970 14 N -0.387 5.387 15 C -0.375 4.375 16 H 0.091 0.909 17 C -0.269 4.269 18 N -0.620 5.620 19 Si 0.802 3.198 20 H -0.191 1.191 21 H -0.219 1.219 22 H -0.222 1.222 23 C -0.158 4.158 24 C -0.026 4.026 25 C -0.063 4.063 26 C -0.228 4.228 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.136 0.864 30 H 0.165 0.835 31 H 0.148 0.852 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.028 0.972 38 H 0.044 0.956 39 H 0.207 0.793 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.134 0.866 44 H 0.114 0.886 45 H 0.175 0.825 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.610 -26.800 9.847 30.822 hybrid contribution 0.650 1.400 -0.522 1.630 sum -10.960 -25.400 9.325 29.193 Atomic orbital electron populations 1.23452 0.75897 1.05892 1.02817 1.86041 1.23941 1.26576 1.87649 1.19442 0.92387 0.85057 0.92992 1.20506 0.92090 0.98462 1.07385 1.21019 1.00253 0.90522 0.93612 1.19708 0.95022 0.92172 1.12127 1.18715 0.83591 0.84677 0.78155 1.90744 1.25028 1.84545 1.46732 1.48107 1.30347 1.08418 1.46337 1.21644 0.99480 0.82491 0.96833 1.21837 0.97849 1.00734 0.94917 1.21213 0.97000 0.97222 0.94779 1.20844 0.96577 0.83953 0.95625 1.42601 1.83727 1.06331 1.06053 1.19663 1.37499 0.92172 0.88195 0.90852 1.25559 1.03631 0.98007 0.99735 1.69811 1.57257 1.10518 1.24376 0.85085 0.76811 0.78498 0.79440 1.19110 1.21870 1.22217 1.21888 1.02728 0.94004 0.97211 1.22503 0.86557 1.03909 0.89636 1.21488 0.92160 0.99181 0.93425 1.21482 1.01826 0.90901 1.08555 0.91214 0.91037 0.86376 0.83500 0.85214 0.89813 0.90766 0.93265 0.92313 0.90730 0.97203 0.95636 0.79262 0.94025 0.92195 0.88210 0.86639 0.88570 0.82468 0.81673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.81 113.37 1.11 1.18 16 2 O -0.33 -4.42 10.48 -90.29 -0.95 -5.36 16 3 C 0.15 2.23 6.70 22.63 0.15 2.38 16 4 C -0.17 -2.85 9.97 22.33 0.22 -2.63 16 5 C -0.04 -0.73 9.60 22.50 0.22 -0.51 16 6 C -0.19 -4.03 5.29 -20.08 -0.11 -4.14 16 7 C 0.56 15.61 7.37 86.72 0.64 16.25 16 8 O -0.59 -21.42 16.24 -3.97 -0.06 -21.49 16 9 N -0.60 -14.83 2.97 -821.73 -2.44 -17.27 16 10 C 0.12 3.33 6.47 86.51 0.56 3.89 16 11 C -0.11 -3.72 5.26 30.82 0.16 -3.56 16 12 C -0.08 -2.49 2.19 -10.77 -0.02 -2.52 16 13 C 0.16 6.13 5.65 86.38 0.49 6.62 16 14 N -0.74 -37.79 5.32 -343.46 -1.83 -39.62 16 15 C -0.24 -13.72 9.99 84.03 0.84 -12.88 16 16 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 17 C -0.08 -4.47 5.50 84.86 0.47 -4.01 16 18 N -0.97 -59.64 13.06 21.65 0.28 -59.35 16 19 Si 0.97 46.56 29.55 68.60 2.03 48.59 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 23 C -0.12 -2.58 5.36 30.67 0.16 -2.41 16 24 C 0.10 1.66 4.78 86.36 0.41 2.07 16 25 C -0.04 -0.65 7.34 22.51 0.17 -0.49 16 26 C -0.21 -2.49 9.01 22.33 0.20 -2.29 16 27 H 0.07 0.21 7.65 -2.39 -0.02 0.19 16 28 H 0.07 0.20 7.65 -2.38 -0.02 0.18 16 29 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 31 H 0.13 2.81 8.00 -2.91 -0.02 2.79 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.07 2.36 7.00 -2.39 -0.02 2.35 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.06 2.23 7.15 -2.39 -0.02 2.22 16 36 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.37 20.11 6.84 -92.70 -0.63 19.48 16 40 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 41 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.12 1.58 4.43 -2.38 -0.01 1.57 16 44 H 0.10 1.28 8.06 -2.39 -0.02 1.26 16 45 H 0.16 1.65 6.05 -2.91 -0.02 1.63 16 46 H 0.17 0.90 6.28 -2.91 -0.02 0.89 16 Total: -1.00 -75.10 367.66 3.06 -72.04 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.35 Total: 25.49 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 5.67 Total: -3.03 kcal Atomic # 7 Polarization: -112.26 SS G_CDS: -3.98 Total: -116.24 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -1.01 Total: -26.85 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -75.10 3.06 -72.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206891443.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.662 kcal (2) G-P(sol) polarization free energy of solvation -75.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds