Wall clock time and date at job start Tue Mar 31 2020 12:42:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45197 * 1
3 3 C 1.34701 * 117.00353 * 2 1
4 4 O 1.21475 * 120.00520 * 0.02562 * 3 2 1
5 5 C 1.47731 * 120.00070 * 180.02562 * 3 2 1
6 6 C 1.39646 * 120.15047 * 359.97438 * 5 3 2
7 7 C 1.37926 * 119.84788 * 180.02562 * 6 5 3
8 8 C 1.38387 * 120.14759 * 359.73101 * 7 6 5
9 9 C 1.38341 * 120.30643 * 0.53755 * 8 7 6
10 10 C 1.50699 * 119.92734 * 179.72701 * 9 8 7
11 11 N 1.46900 * 109.47154 * 269.73748 * 10 9 8
12 12 C 1.46899 * 110.99875 * 180.02562 * 11 10 9
13 13 C 1.53349 * 109.40816 * 275.11806 * 12 11 10
14 14 C 1.53196 * 109.15353 * 178.68149 * 13 12 11
15 15 N 1.46928 * 108.89135 * 54.57497 * 14 13 12
16 16 C 1.36936 * 120.63013 * 126.29699 * 15 14 13
17 17 H 1.07999 * 120.00022 * 331.83633 * 16 15 14
18 18 C 1.38813 * 120.00005 * 151.82709 * 16 15 14
19 19 N 1.31618 * 120.00004 * 343.09585 * 18 16 15
20 20 Si 1.86806 * 119.99953 * 163.09475 * 18 16 15
21 21 H 1.48494 * 109.47083 * 60.00061 * 20 18 16
22 22 H 1.48500 * 109.46851 * 180.02562 * 20 18 16
23 23 H 1.48503 * 109.47024 * 300.00112 * 20 18 16
24 24 C 1.46924 * 118.73859 * 306.32337 * 15 14 13
25 25 C 1.53044 * 109.46250 * 154.99756 * 12 11 10
26 26 C 1.37965 * 120.14655 * 359.46435 * 9 8 7
27 27 H 1.08997 * 109.47697 * 179.97438 * 1 2 3
28 28 H 1.09003 * 109.47029 * 299.99941 * 1 2 3
29 29 H 1.08998 * 109.46915 * 59.99297 * 1 2 3
30 30 H 1.07997 * 120.07243 * 359.97438 * 6 5 3
31 31 H 1.08001 * 119.91913 * 180.02562 * 7 6 5
32 32 H 1.08001 * 119.84498 * 180.27459 * 8 7 6
33 33 H 1.08998 * 109.47289 * 149.73071 * 10 9 8
34 34 H 1.09000 * 109.46650 * 29.73422 * 10 9 8
35 35 H 1.00898 * 110.99976 * 303.94419 * 11 10 9
36 36 H 1.09001 * 109.46232 * 35.02530 * 12 11 10
37 37 H 1.08998 * 109.68701 * 58.71638 * 13 12 11
38 38 H 1.09000 * 109.47234 * 298.51706 * 13 12 11
39 39 H 1.08996 * 109.58345 * 294.72319 * 14 13 12
40 40 H 1.08994 * 109.58644 * 174.43734 * 14 13 12
41 41 H 0.96996 * 119.99787 * 179.97438 * 19 18 16
42 42 H 1.09000 * 109.58664 * 173.39523 * 24 15 14
43 43 H 1.08996 * 109.58580 * 293.67452 * 24 15 14
44 44 H 1.08992 * 109.49619 * 61.41573 * 25 12 11
45 45 H 1.09005 * 109.49321 * 301.31888 * 25 12 11
46 46 H 1.08005 * 120.07038 * 180.24495 * 26 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0636 1.2002 0.0000
4 8 1.4021 2.2190 0.0005
5 6 3.5389 1.2774 -0.0006
6 6 4.3024 0.1082 -0.0006
7 6 5.6794 0.1876 -0.0006
8 6 6.3044 1.4223 -0.0062
9 6 5.5541 2.5845 -0.0006
10 6 6.2436 3.9245 -0.0006
11 7 6.4677 4.3599 1.3844
12 6 7.1390 5.6659 1.4236
13 6 8.6547 5.4635 1.3079
14 6 9.3465 6.8303 1.3162
15 7 8.9244 7.5698 2.5136
16 6 9.8526 8.0877 3.3770
17 1 10.8201 7.6179 3.4752
18 6 9.5500 9.2165 4.1260
19 7 8.5339 9.9801 3.7843
20 14 10.5850 9.6519 5.6190
21 1 11.9932 9.8666 5.1995
22 1 10.0586 10.8933 6.2412
23 1 10.5255 8.5417 6.6034
24 6 7.4876 7.7426 2.7673
25 6 6.8139 6.3670 2.7446
26 6 4.1760 2.5196 -0.0006
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8899
30 1 3.8158 -0.8559 0.0003
31 1 6.2711 -0.7159 -0.0010
32 1 7.3829 1.4787 -0.0107
33 1 5.6186 4.6548 -0.5145
34 1 7.2012 3.8403 -0.5144
35 1 5.6011 4.3837 1.9006
36 1 6.7905 6.2785 0.5921
37 1 8.8859 4.9444 0.3778
38 1 9.0078 4.8719 2.1526
39 1 9.0637 7.3883 0.4237
40 1 10.4275 6.6926 1.3339
41 1 8.3223 10.7687 4.3079
42 1 7.3419 8.2047 3.7437
43 1 7.0539 8.3771 1.9945
44 1 7.1841 5.7668 3.5756
45 1 5.7346 6.4889 2.8356
46 1 3.5914 3.4278 -0.0003
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001322475243.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:42:34
Heat of formation + Delta-G solvation = -39.909746 kcal
Electronic energy + Delta-G solvation = -25851.924973 eV
Core-core repulsion = 22127.848726 eV
Total energy + Delta-G solvation = -3724.076248 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.85868 -39.34243 -37.92603 -36.72264 -35.28220 -32.85106 -31.66358 -31.24055
-29.94379 -29.01027 -28.09540 -25.67983 -24.37543 -24.12313 -22.24587 -21.86046
-21.22252 -20.79299 -19.07405 -17.93217 -17.45075 -16.71478 -16.67043 -16.30742
-15.68680 -15.11353 -14.90485 -14.61638 -14.52505 -13.95763 -13.88528 -13.77661
-13.48569 -13.39547 -13.10474 -12.68150 -12.52311 -12.42656 -12.27638 -12.05338
-11.77371 -11.41931 -11.28622 -11.16075 -10.96119 -10.82832 -10.72230 -10.66628
-10.32706 -10.19200 -9.91834 -9.58323 -9.49498 -9.30807 -9.08298 -8.44246
-8.19821 -6.64244 -5.76302 -3.18395 0.43173 1.04877 2.26209 2.33604
3.40513 3.46106 3.47144 3.47778 4.35138 4.38144 4.52370 4.57318
4.64379 4.74173 4.82269 4.84207 5.01242 5.09803 5.12849 5.32571
5.39704 5.43187 5.47450 5.59789 5.60989 5.72046 5.75212 5.92833
5.94452 5.97319 6.11955 6.16977 6.31921 6.36434 6.48475 6.54302
6.56873 6.65313 6.68770 6.83899 7.05985 7.32058 7.39487 7.41513
7.57780 7.68295 7.82202 8.48310 9.24268 9.87936 10.44958 11.32448
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.024658 B = 0.002222 C = 0.002120
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1135.262710 B =12596.806722 C =13203.982766
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.356 6.356
3 C 0.509 3.491
4 O -0.505 6.505
5 C -0.131 4.131
6 C -0.065 4.065
7 C -0.134 4.134
8 C -0.059 4.059
9 C -0.086 4.086
10 C 0.096 3.904
11 N -0.683 5.683
12 C 0.096 3.904
13 C -0.116 4.116
14 C 0.144 3.856
15 N -0.591 5.591
16 C -0.251 4.251
17 H 0.065 0.935
18 C 0.001 3.999
19 N -0.904 5.904
20 Si 0.903 3.097
21 H -0.283 1.283
22 H -0.291 1.291
23 H -0.284 1.284
24 C 0.173 3.827
25 C -0.141 4.141
26 C -0.049 4.049
27 H 0.102 0.898
28 H 0.064 0.936
29 H 0.063 0.937
30 H 0.136 0.864
31 H 0.132 0.868
32 H 0.133 0.867
33 H 0.039 0.961
34 H 0.084 0.916
35 H 0.338 0.662
36 H 0.037 0.963
37 H 0.046 0.954
38 H 0.064 0.936
39 H 0.014 0.986
40 H 0.054 0.946
41 H 0.254 0.746
42 H 0.088 0.912
43 H 0.016 0.984
44 H 0.063 0.937
45 H 0.045 0.955
46 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.814 -21.840 -9.774 26.686
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.057 4.057
2 O -0.273 6.273
3 C 0.354 3.646
4 O -0.394 6.394
5 C -0.132 4.132
6 C -0.084 4.084
7 C -0.152 4.152
8 C -0.077 4.077
9 C -0.087 4.087
10 C -0.033 4.033
11 N -0.314 5.314
12 C -0.013 4.013
13 C -0.156 4.156
14 C 0.017 3.983
15 N -0.314 5.314
16 C -0.380 4.380
17 H 0.082 0.918
18 C -0.198 4.198
19 N -0.549 5.549
20 Si 0.733 3.267
21 H -0.209 1.209
22 H -0.217 1.217
23 H -0.210 1.210
24 C 0.047 3.953
25 C -0.180 4.180
26 C -0.068 4.068
27 H 0.121 0.879
28 H 0.083 0.917
29 H 0.082 0.918
30 H 0.153 0.847
31 H 0.150 0.850
32 H 0.151 0.849
33 H 0.057 0.943
34 H 0.102 0.898
35 H 0.156 0.844
36 H 0.055 0.945
37 H 0.064 0.936
38 H 0.083 0.917
39 H 0.032 0.968
40 H 0.073 0.927
41 H 0.064 0.936
42 H 0.107 0.893
43 H 0.034 0.966
44 H 0.082 0.918
45 H 0.064 0.936
46 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges -11.506 -21.716 -9.626 26.394
hybrid contribution -0.567 0.882 0.509 1.165
sum -12.073 -20.835 -9.117 25.748
Atomic orbital electron populations
1.23293 0.75873 1.03791 1.02765 1.86531 1.23645 1.32711 1.84412
1.21279 0.89233 0.81418 0.72630 1.90851 1.66824 1.36004 1.45728
1.19008 0.88702 0.95064 1.10442 1.21427 0.94027 0.97681 0.95253
1.21179 0.94240 0.98176 1.01631 1.21405 1.00711 0.91572 0.94031
1.19853 0.92541 0.96040 1.00249 1.20937 0.99488 0.91236 0.91593
1.60699 1.28584 1.30780 1.11361 1.21568 0.95022 0.86847 0.97870
1.22062 0.94054 0.99088 1.00420 1.20924 0.97103 0.90411 0.89844
1.44036 1.01770 1.62817 1.22805 1.19149 0.96823 1.05818 1.16247
0.91751 1.25052 0.98588 0.95344 1.00778 1.70019 1.30767 1.15000
1.39116 0.86363 0.79818 0.77353 0.83203 1.20897 1.21683 1.21027
1.20738 0.82781 0.90055 1.01729 1.22398 0.98858 1.00586 0.96186
1.21185 0.94148 0.96726 0.94693 0.87914 0.91712 0.91784 0.84658
0.85029 0.84942 0.94292 0.89783 0.84445 0.94508 0.93557 0.91745
0.96801 0.92749 0.93618 0.89343 0.96565 0.91801 0.93613 0.84727
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.24 10.56 101.05 1.07 1.30 16
2 O -0.36 -3.36 9.82 -40.49 -0.40 -3.76 16
3 C 0.51 5.88 7.90 34.61 0.27 6.15 16
4 O -0.51 -7.12 16.14 -19.25 -0.31 -7.44 16
5 C -0.13 -1.41 5.87 -104.98 -0.62 -2.02 16
6 C -0.07 -0.57 9.62 -39.17 -0.38 -0.95 16
7 C -0.13 -1.09 10.03 -39.64 -0.40 -1.48 16
8 C -0.06 -0.55 9.69 -39.49 -0.38 -0.93 16
9 C -0.09 -0.93 5.39 -104.68 -0.56 -1.49 16
10 C 0.10 1.13 5.61 -4.98 -0.03 1.10 16
11 N -0.68 -9.57 6.30 -107.78 -0.68 -10.25 16
12 C 0.10 1.60 2.46 -67.51 -0.17 1.44 16
13 C -0.12 -2.05 5.61 -26.45 -0.15 -2.20 16
14 C 0.14 3.05 6.51 -3.71 -0.02 3.02 16
15 N -0.59 -14.94 2.99 -172.32 -0.52 -15.46 16
16 C -0.25 -6.94 9.58 -15.06 -0.14 -7.08 16
17 H 0.06 1.75 7.88 -52.49 -0.41 1.33 16
18 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16
19 N -0.90 -26.44 11.20 55.49 0.62 -25.82 16
20 Si 0.90 21.86 29.59 -169.99 -5.03 16.83 16
21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
22 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16
23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
24 C 0.17 4.16 5.30 -3.71 -0.02 4.14 16
25 C -0.14 -2.69 5.36 -26.61 -0.14 -2.83 16
26 C -0.05 -0.54 9.24 -39.17 -0.36 -0.91 16
27 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16
28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
30 H 0.14 0.93 7.61 -52.49 -0.40 0.53 16
31 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16
32 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16
33 H 0.04 0.46 8.00 -51.93 -0.42 0.04 16
34 H 0.08 0.96 7.36 -51.93 -0.38 0.58 16
35 H 0.34 4.61 8.32 -39.29 -0.33 4.29 16
36 H 0.04 0.64 7.80 -51.93 -0.40 0.24 16
37 H 0.05 0.71 7.43 -51.93 -0.39 0.32 16
38 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16
39 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16
40 H 0.05 1.13 7.93 -51.93 -0.41 0.71 16
41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16
42 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16
43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
44 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16
45 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16
46 H 0.13 1.55 7.65 -52.48 -0.40 1.15 16
LS Contribution 376.56 15.07 5.67 5.67
Total: -1.00 -31.58 376.56 -9.97 -41.55
By element:
Atomic # 1 Polarization: 8.68 SS G_CDS: -7.22 Total: 1.47 kcal
Atomic # 6 Polarization: -0.68 SS G_CDS: -2.12 Total: -2.80 kcal
Atomic # 7 Polarization: -50.95 SS G_CDS: -0.57 Total: -51.52 kcal
Atomic # 8 Polarization: -10.49 SS G_CDS: -0.71 Total: -11.20 kcal
Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal
Total LS contribution 5.67 Total: 5.67 kcal
Total: -31.58 -9.97 -41.55 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001322475243.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.643 kcal
(2) G-P(sol) polarization free energy of solvation -31.582 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.939 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal
(6) G-S(sol) free energy of system = (1) + (5) -39.910 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds