Wall clock time and date at job start Tue Mar 31 2020 12:42:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45197 * 1
3 3 C 1.34701 * 117.00353 * 2 1
4 4 O 1.21475 * 120.00520 * 0.02562 * 3 2 1
5 5 C 1.47731 * 120.00070 * 180.02562 * 3 2 1
6 6 C 1.39646 * 120.15047 * 359.97438 * 5 3 2
7 7 C 1.37926 * 119.84788 * 180.02562 * 6 5 3
8 8 C 1.38387 * 120.14759 * 359.73101 * 7 6 5
9 9 C 1.38341 * 120.30643 * 0.53755 * 8 7 6
10 10 C 1.50699 * 119.92734 * 179.72701 * 9 8 7
11 11 N 1.46900 * 109.47154 * 269.73748 * 10 9 8
12 12 C 1.46899 * 110.99875 * 180.02562 * 11 10 9
13 13 C 1.53349 * 109.40816 * 275.11806 * 12 11 10
14 14 C 1.53196 * 109.15353 * 178.68149 * 13 12 11
15 15 N 1.46928 * 108.89135 * 54.57497 * 14 13 12
16 16 C 1.36936 * 120.63013 * 126.29699 * 15 14 13
17 17 H 1.07999 * 120.00022 * 331.83633 * 16 15 14
18 18 C 1.38813 * 120.00005 * 151.82709 * 16 15 14
19 19 N 1.31618 * 120.00004 * 343.09585 * 18 16 15
20 20 Si 1.86806 * 119.99953 * 163.09475 * 18 16 15
21 21 H 1.48494 * 109.47083 * 60.00061 * 20 18 16
22 22 H 1.48500 * 109.46851 * 180.02562 * 20 18 16
23 23 H 1.48503 * 109.47024 * 300.00112 * 20 18 16
24 24 C 1.46924 * 118.73859 * 306.32337 * 15 14 13
25 25 C 1.53044 * 109.46250 * 154.99756 * 12 11 10
26 26 C 1.37965 * 120.14655 * 359.46435 * 9 8 7
27 27 H 1.08997 * 109.47697 * 179.97438 * 1 2 3
28 28 H 1.09003 * 109.47029 * 299.99941 * 1 2 3
29 29 H 1.08998 * 109.46915 * 59.99297 * 1 2 3
30 30 H 1.07997 * 120.07243 * 359.97438 * 6 5 3
31 31 H 1.08001 * 119.91913 * 180.02562 * 7 6 5
32 32 H 1.08001 * 119.84498 * 180.27459 * 8 7 6
33 33 H 1.08998 * 109.47289 * 149.73071 * 10 9 8
34 34 H 1.09000 * 109.46650 * 29.73422 * 10 9 8
35 35 H 1.00898 * 110.99976 * 303.94419 * 11 10 9
36 36 H 1.09001 * 109.46232 * 35.02530 * 12 11 10
37 37 H 1.08998 * 109.68701 * 58.71638 * 13 12 11
38 38 H 1.09000 * 109.47234 * 298.51706 * 13 12 11
39 39 H 1.08996 * 109.58345 * 294.72319 * 14 13 12
40 40 H 1.08994 * 109.58644 * 174.43734 * 14 13 12
41 41 H 0.96996 * 119.99787 * 179.97438 * 19 18 16
42 42 H 1.09000 * 109.58664 * 173.39523 * 24 15 14
43 43 H 1.08996 * 109.58580 * 293.67452 * 24 15 14
44 44 H 1.08992 * 109.49619 * 61.41573 * 25 12 11
45 45 H 1.09005 * 109.49321 * 301.31888 * 25 12 11
46 46 H 1.08005 * 120.07038 * 180.24495 * 26 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0636 1.2002 0.0000
4 8 1.4021 2.2190 0.0005
5 6 3.5389 1.2774 -0.0006
6 6 4.3024 0.1082 -0.0006
7 6 5.6794 0.1876 -0.0006
8 6 6.3044 1.4223 -0.0062
9 6 5.5541 2.5845 -0.0006
10 6 6.2436 3.9245 -0.0006
11 7 6.4677 4.3599 1.3844
12 6 7.1390 5.6659 1.4236
13 6 8.6547 5.4635 1.3079
14 6 9.3465 6.8303 1.3162
15 7 8.9244 7.5698 2.5136
16 6 9.8526 8.0877 3.3770
17 1 10.8201 7.6179 3.4752
18 6 9.5500 9.2165 4.1260
19 7 8.5339 9.9801 3.7843
20 14 10.5850 9.6519 5.6190
21 1 11.9932 9.8666 5.1995
22 1 10.0586 10.8933 6.2412
23 1 10.5255 8.5417 6.6034
24 6 7.4876 7.7426 2.7673
25 6 6.8139 6.3670 2.7446
26 6 4.1760 2.5196 -0.0006
27 1 -0.3634 -1.0276 -0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5139 -0.8899
30 1 3.8158 -0.8559 0.0003
31 1 6.2711 -0.7159 -0.0010
32 1 7.3829 1.4787 -0.0107
33 1 5.6186 4.6548 -0.5145
34 1 7.2012 3.8403 -0.5144
35 1 5.6011 4.3837 1.9006
36 1 6.7905 6.2785 0.5921
37 1 8.8859 4.9444 0.3778
38 1 9.0078 4.8719 2.1526
39 1 9.0637 7.3883 0.4237
40 1 10.4275 6.6926 1.3339
41 1 8.3223 10.7687 4.3079
42 1 7.3419 8.2047 3.7437
43 1 7.0539 8.3771 1.9945
44 1 7.1841 5.7668 3.5756
45 1 5.7346 6.4889 2.8356
46 1 3.5914 3.4278 -0.0003
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001322475243.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:42:34
Heat of formation + Delta-G solvation = -58.312091 kcal
Electronic energy + Delta-G solvation = -25852.722959 eV
Core-core repulsion = 22127.848726 eV
Total energy + Delta-G solvation = -3724.874233 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.66475 -40.19075 -39.38127 -37.55323 -36.71361 -34.37602 -32.84841 -32.27414
-31.56761 -30.52560 -28.72243 -27.11008 -25.65189 -25.11465 -23.81537 -23.04032
-22.51118 -21.63435 -20.70642 -18.88603 -18.55735 -18.23054 -17.44103 -17.01561
-16.89080 -16.66647 -16.08397 -15.79440 -15.60404 -15.35226 -15.30301 -14.80956
-14.59017 -14.56477 -14.47802 -13.84937 -13.75736 -13.51497 -13.22920 -13.10882
-13.04219 -12.93593 -12.64027 -12.52341 -12.38472 -12.09638 -12.09027 -11.94954
-11.86981 -11.76968 -11.63438 -11.24643 -11.14893 -10.53022 -10.03564 -9.89748
-9.35252 -8.68172 -7.87257 -5.32518 -0.33733 0.32122 1.44959 1.46856
1.49750 1.56359 1.63123 2.51916 2.70302 3.24027 3.35775 3.63257
3.70732 3.76510 3.87503 4.01537 4.11599 4.13556 4.26917 4.29070
4.30419 4.37339 4.46156 4.56273 4.58219 4.68108 4.70246 4.72023
4.84487 4.88184 4.98268 5.00462 5.04868 5.12024 5.18812 5.26199
5.26557 5.41877 5.42151 5.53606 5.56591 5.65204 5.73478 5.86797
6.10672 6.39614 6.43121 6.60069 7.15171 7.86863 8.38731 9.19252
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.024658 B = 0.002222 C = 0.002120
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1135.262710 B =12596.806722 C =13203.982766
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.028 3.972
2 O -0.354 6.354
3 C 0.509 3.491
4 O -0.542 6.542
5 C -0.148 4.148
6 C -0.057 4.057
7 C -0.127 4.127
8 C -0.059 4.059
9 C -0.095 4.095
10 C 0.099 3.901
11 N -0.678 5.678
12 C 0.106 3.894
13 C -0.102 4.102
14 C 0.139 3.861
15 N -0.611 5.611
16 C -0.262 4.262
17 H 0.067 0.933
18 C -0.053 4.053
19 N -0.937 5.937
20 Si 0.968 3.032
21 H -0.274 1.274
22 H -0.295 1.295
23 H -0.278 1.278
24 C 0.179 3.821
25 C -0.127 4.127
26 C -0.061 4.061
27 H 0.138 0.862
28 H 0.060 0.940
29 H 0.062 0.938
30 H 0.156 0.844
31 H 0.164 0.836
32 H 0.147 0.853
33 H 0.037 0.963
34 H 0.093 0.907
35 H 0.340 0.660
36 H 0.033 0.967
37 H 0.077 0.923
38 H 0.055 0.945
39 H 0.012 0.988
40 H 0.055 0.945
41 H 0.250 0.750
42 H 0.053 0.947
43 H -0.006 1.006
44 H 0.055 0.945
45 H 0.063 0.937
46 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.245 -24.958 -10.233 29.224
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.065 4.065
2 O -0.270 6.270
3 C 0.356 3.644
4 O -0.434 6.434
5 C -0.149 4.149
6 C -0.076 4.076
7 C -0.145 4.145
8 C -0.078 4.078
9 C -0.096 4.096
10 C -0.029 4.029
11 N -0.309 5.309
12 C -0.003 4.003
13 C -0.141 4.141
14 C 0.013 3.987
15 N -0.334 5.334
16 C -0.392 4.392
17 H 0.084 0.916
18 C -0.249 4.249
19 N -0.583 5.583
20 Si 0.796 3.204
21 H -0.200 1.200
22 H -0.221 1.221
23 H -0.204 1.204
24 C 0.053 3.947
25 C -0.166 4.166
26 C -0.080 4.080
27 H 0.156 0.844
28 H 0.079 0.921
29 H 0.080 0.920
30 H 0.174 0.826
31 H 0.182 0.818
32 H 0.165 0.835
33 H 0.055 0.945
34 H 0.111 0.889
35 H 0.158 0.842
36 H 0.051 0.949
37 H 0.096 0.904
38 H 0.074 0.926
39 H 0.030 0.970
40 H 0.074 0.926
41 H 0.059 0.941
42 H 0.072 0.928
43 H 0.012 0.988
44 H 0.074 0.926
45 H 0.081 0.919
46 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges -10.934 -24.887 -10.106 29.001
hybrid contribution -0.782 1.763 0.581 2.015
sum -11.716 -23.123 -9.525 27.617
Atomic orbital electron populations
1.23602 0.74286 1.06038 1.02527 1.86520 1.25214 1.31474 1.83808
1.21525 0.89681 0.81479 0.71713 1.90828 1.67640 1.37211 1.47686
1.19109 0.88486 0.95724 1.11623 1.21702 0.94399 0.97722 0.93740
1.21531 0.94099 0.98884 0.99953 1.21655 1.01458 0.91498 0.93145
1.19735 0.92247 0.96027 1.01573 1.20949 1.00072 0.91870 0.90038
1.60625 1.28780 1.28504 1.13038 1.21313 0.94967 0.88024 0.96021
1.21870 0.93974 0.96678 1.01628 1.21093 0.97693 0.91766 0.88113
1.44316 1.01864 1.63198 1.24048 1.19491 0.97313 1.05711 1.16697
0.91562 1.25830 1.00050 0.95516 1.03465 1.70179 1.32535 1.15407
1.40163 0.85331 0.78519 0.76774 0.79779 1.19960 1.22084 1.20449
1.20530 0.82948 0.92278 0.98937 1.22152 0.99303 0.97650 0.97515
1.21139 0.94483 0.96679 0.95673 0.84403 0.92124 0.91953 0.82599
0.81850 0.83491 0.94506 0.88887 0.84155 0.94902 0.90409 0.92630
0.97044 0.92613 0.94142 0.92825 0.98756 0.92639 0.91871 0.86113
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.33 10.56 113.37 1.20 1.53 16
2 O -0.35 -6.20 9.82 -56.11 -0.55 -6.75 16
3 C 0.51 11.56 7.90 70.33 0.56 12.12 16
4 O -0.54 -15.65 16.14 19.92 0.32 -15.33 16
5 C -0.15 -3.02 5.87 -20.10 -0.12 -3.13 16
6 C -0.06 -0.84 9.62 22.54 0.22 -0.62 16
7 C -0.13 -1.58 10.03 22.23 0.22 -1.36 16
8 C -0.06 -0.92 9.69 22.33 0.22 -0.71 16
9 C -0.10 -1.88 5.39 -19.90 -0.11 -1.98 16
10 C 0.10 2.14 5.61 85.56 0.48 2.62 16
11 N -0.68 -17.79 6.30 -494.90 -3.12 -20.91 16
12 C 0.11 3.43 2.46 45.05 0.11 3.54 16
13 C -0.10 -3.41 5.61 30.78 0.17 -3.23 16
14 C 0.14 5.81 6.51 86.36 0.56 6.38 16
15 N -0.61 -31.31 2.99 -699.11 -2.09 -33.40 16
16 C -0.26 -14.67 9.58 84.03 0.81 -13.87 16
17 H 0.07 3.61 7.88 -2.91 -0.02 3.58 16
18 C -0.05 -3.04 4.92 84.86 0.42 -2.62 16
19 N -0.94 -56.44 11.20 21.65 0.24 -56.20 16
20 Si 0.97 45.53 29.59 68.60 2.03 47.56 16
21 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16
22 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16
23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
24 C 0.18 8.86 5.30 86.36 0.46 9.32 16
25 C -0.13 -4.84 5.36 30.67 0.16 -4.68 16
26 C -0.06 -1.33 9.24 22.54 0.21 -1.12 16
27 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16
28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16
30 H 0.16 1.59 7.61 -2.91 -0.02 1.57 16
31 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16
32 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16
33 H 0.04 0.82 8.00 -2.39 -0.02 0.80 16
34 H 0.09 1.85 7.36 -2.39 -0.02 1.83 16
35 H 0.34 8.84 8.32 -89.70 -0.75 8.09 16
36 H 0.03 1.11 7.80 -2.39 -0.02 1.09 16
37 H 0.08 2.13 7.43 -2.39 -0.02 2.12 16
38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16
39 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16
40 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16
41 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16
42 H 0.05 3.00 6.06 -2.39 -0.01 2.99 16
43 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16
44 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16
45 H 0.06 2.17 8.10 -2.38 -0.02 2.15 16
46 H 0.12 2.88 7.65 -2.91 -0.02 2.86 16
Total: -1.00 -70.02 376.56 2.62 -67.40
By element:
Atomic # 1 Polarization: 15.22 SS G_CDS: 0.23 Total: 15.44 kcal
Atomic # 6 Polarization: -3.37 SS G_CDS: 5.56 Total: 2.19 kcal
Atomic # 7 Polarization: -105.54 SS G_CDS: -4.97 Total: -110.50 kcal
Atomic # 8 Polarization: -21.85 SS G_CDS: -0.23 Total: -22.08 kcal
Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal
Total: -70.02 2.62 -67.40 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001322475243.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.083 kcal
(2) G-P(sol) polarization free energy of solvation -70.018 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.935 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.395 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.312 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds