Wall clock time and date at job start Tue Mar 31 2020 12:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 116.99688 * 2 1 4 4 C 1.38750 * 120.05883 * 0.02562 * 3 2 1 5 5 C 1.38117 * 119.94586 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05545 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11099 * 359.97411 * 6 5 4 8 8 C 1.38173 * 120.05560 * 0.05153 * 7 6 5 9 9 C 1.50693 * 120.02483 * 179.97438 * 8 7 6 10 10 N 1.46502 * 112.85181 * 106.49662 * 9 8 7 11 11 C 1.34785 * 119.99806 * 309.66405 * 10 9 8 12 12 O 1.21585 * 119.99587 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00031 * 180.02562 * 11 10 9 14 14 C 1.46491 * 119.99905 * 179.97438 * 13 11 10 15 15 C 1.53002 * 109.47383 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.47555 * 180.02562 * 15 14 13 17 17 H 1.07996 * 119.99708 * 0.02562 * 16 15 14 18 18 C 1.37874 * 119.99938 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00219 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99633 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47237 * 90.00083 * 20 18 16 22 22 H 1.48506 * 109.46855 * 209.99843 * 20 18 16 23 23 H 1.48498 * 109.47127 * 329.99604 * 20 18 16 24 24 C 1.53776 * 113.61997 * 335.18379 * 9 8 7 25 25 C 1.53776 * 87.08452 * 220.02078 * 24 9 8 26 26 C 1.53778 * 87.08141 * 25.43345 * 25 24 9 27 27 H 1.09005 * 109.47383 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47223 * 299.99482 * 1 2 3 29 29 H 1.09001 * 109.47417 * 59.99353 * 1 2 3 30 30 H 1.07999 * 120.02767 * 0.04009 * 4 3 2 31 31 H 1.08001 * 119.97789 * 180.24810 * 5 4 3 32 32 H 1.07997 * 119.94444 * 180.02562 * 6 5 4 33 33 H 1.07999 * 119.97318 * 180.02562 * 7 6 5 34 34 H 0.96997 * 120.00269 * 129.65768 * 10 9 8 35 35 H 0.97001 * 119.99844 * 359.97438 * 13 11 10 36 36 H 1.09002 * 109.47709 * 299.99990 * 14 13 11 37 37 H 1.09003 * 109.47125 * 60.00254 * 14 13 11 38 38 H 1.09006 * 109.47261 * 300.00696 * 15 14 13 39 39 H 1.09006 * 109.47183 * 60.00046 * 15 14 13 40 40 H 0.97003 * 120.00450 * 179.97438 * 19 18 16 41 41 H 1.09003 * 113.61360 * 334.57146 * 24 9 8 42 42 H 1.09002 * 113.61474 * 105.47205 * 24 9 8 43 43 H 1.08998 * 113.61693 * 270.88327 * 25 24 9 44 44 H 1.09003 * 113.61133 * 139.98043 * 25 24 9 45 45 H 1.09002 * 113.61582 * 220.02206 * 26 25 24 46 46 H 1.09003 * 113.61646 * 89.11428 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3019 3.6758 -0.0005 7 6 4.0559 2.5172 0.0000 8 6 3.4310 1.2848 0.0000 9 6 4.2537 0.0222 0.0000 10 7 4.2431 -0.6637 1.2945 11 6 4.5164 0.0215 2.4225 12 8 4.7723 1.2088 2.3656 13 7 4.5072 -0.6096 3.6133 14 6 4.8049 0.1351 4.8392 15 6 4.7273 -0.8088 6.0409 16 6 5.0328 -0.0427 7.3021 17 1 5.2593 1.0121 7.2517 18 6 5.0222 -0.6881 8.5204 19 7 4.7460 -1.9723 8.5819 20 14 5.4003 0.2619 10.0838 21 1 4.1408 0.8131 10.6450 22 1 6.0279 -0.6476 11.0760 23 1 6.3329 1.3750 9.7734 24 6 5.6615 0.2042 -0.5913 25 6 5.4725 -1.1677 -1.2599 26 6 3.9589 -0.9051 -1.1909 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 0.2128 2.3204 0.0016 31 1 1.3339 4.5114 0.0045 32 1 3.7921 4.6381 -0.0005 33 1 5.1344 2.5753 0.0000 34 1 4.0393 -1.6109 1.3398 35 1 4.3035 -1.5569 3.6585 36 1 5.8073 0.5581 4.7732 37 1 4.0787 0.9388 4.9615 38 1 3.7247 -1.2315 6.1068 39 1 5.4531 -1.6128 5.9189 40 1 4.7389 -2.4265 9.4390 41 1 5.7341 1.0291 -1.3002 42 1 6.4518 0.2189 0.1592 43 1 5.7993 -2.0036 -0.6414 44 1 5.8616 -1.2150 -2.2770 45 1 3.3746 -1.7858 -0.9243 46 1 3.5660 -0.3834 -2.0636 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342306447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:08:07 Heat of formation + Delta-G solvation = -43.166284 kcal Electronic energy + Delta-G solvation = -27209.839353 eV Core-core repulsion = 23485.621892 eV Total energy + Delta-G solvation = -3724.217462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.97838 -40.54336 -39.30585 -38.01298 -36.45889 -34.81368 -34.00868 -32.17387 -31.17366 -30.93011 -28.16316 -26.96240 -26.62003 -25.70314 -23.17455 -22.88763 -22.58474 -21.95488 -20.11552 -19.41060 -18.94326 -18.38669 -17.44473 -16.94772 -16.74179 -16.54899 -16.45614 -16.33631 -15.95073 -15.48897 -15.23841 -15.05620 -14.80418 -14.64262 -14.46278 -14.23251 -13.51999 -13.31637 -13.20534 -13.08291 -12.92663 -12.78299 -12.52049 -12.41000 -12.21995 -12.13443 -11.95344 -11.79888 -11.63538 -11.48045 -11.45850 -11.27528 -11.06920 -10.60203 -10.16073 -9.70668 -9.61509 -9.02760 -8.24012 -6.34445 0.41769 0.57170 1.41305 1.42094 1.53629 1.84481 2.29786 2.41277 2.44789 2.87724 3.10632 3.44047 3.56878 3.72521 3.75657 3.92359 4.05806 4.18668 4.30390 4.37133 4.40471 4.49388 4.52527 4.53926 4.60850 4.74360 4.81225 4.84314 4.86531 4.86775 5.07100 5.09650 5.11304 5.17384 5.31320 5.34321 5.45080 5.53543 5.55297 5.59465 5.66383 5.79109 5.82401 5.92241 6.12273 6.18057 6.52320 6.78520 7.22181 7.35070 7.74126 8.88026 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.003115 C = 0.002975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.417313 B = 8986.888623 C = 9411.050929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.319 6.319 3 C 0.126 3.874 4 C -0.226 4.226 5 C -0.086 4.086 6 C -0.176 4.176 7 C -0.051 4.051 8 C -0.121 4.121 9 C 0.211 3.789 10 N -0.709 5.709 11 C 0.698 3.302 12 O -0.618 6.618 13 N -0.738 5.738 14 C 0.167 3.833 15 C 0.025 3.975 16 C -0.546 4.546 17 H 0.057 0.943 18 C 0.008 3.992 19 N -0.927 5.927 20 Si 0.965 3.035 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.266 1.266 24 C -0.147 4.147 25 C -0.128 4.128 26 C -0.110 4.110 27 H 0.117 0.883 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.134 0.866 33 H 0.119 0.881 34 H 0.407 0.593 35 H 0.403 0.597 36 H 0.041 0.959 37 H 0.037 0.963 38 H 0.006 0.994 39 H 0.008 0.992 40 H 0.266 0.734 41 H 0.096 0.904 42 H 0.050 0.950 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.978 2.593 -24.994 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.233 6.233 3 C 0.081 3.919 4 C -0.245 4.245 5 C -0.104 4.104 6 C -0.195 4.195 7 C -0.070 4.070 8 C -0.123 4.123 9 C 0.124 3.876 10 N -0.364 5.364 11 C 0.398 3.602 12 O -0.499 6.499 13 N -0.393 5.393 14 C 0.042 3.958 15 C -0.012 4.012 16 C -0.585 4.585 17 H 0.076 0.924 18 C -0.191 4.191 19 N -0.566 5.566 20 Si 0.789 3.211 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.186 4.186 25 C -0.166 4.166 26 C -0.148 4.148 27 H 0.136 0.864 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.162 0.838 31 H 0.163 0.837 32 H 0.152 0.848 33 H 0.137 0.863 34 H 0.243 0.757 35 H 0.238 0.762 36 H 0.059 0.941 37 H 0.055 0.945 38 H 0.024 0.976 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.683 3.316 -24.915 26.007 hybrid contribution -0.210 -0.249 1.424 1.460 sum -6.893 3.067 -23.491 24.673 Atomic orbital electron populations 1.23264 0.77297 1.05245 1.01653 1.86061 1.22495 1.26248 1.88478 1.18975 0.91713 0.85025 0.96233 1.21449 1.00818 0.92328 1.09880 1.21221 0.94638 0.97808 0.96735 1.21282 0.94553 0.98721 1.04902 1.20874 0.99865 0.91487 0.94769 1.19221 0.90623 0.95600 1.06878 1.19819 0.95037 0.90206 0.82563 1.44666 1.75432 1.12512 1.03777 1.16158 0.78125 0.85052 0.80859 1.90860 1.57412 1.15089 1.86494 1.45240 1.75459 1.13402 1.05212 1.20964 0.98330 0.94230 0.82249 1.19114 0.96170 0.94473 0.91458 1.21453 1.48269 0.96188 0.92574 0.92440 1.25861 0.94679 0.95862 1.02662 1.70058 1.49634 1.10305 1.26615 0.85449 0.78683 0.78495 0.78449 1.19745 1.20369 1.19077 1.23410 0.95892 0.99508 0.99783 1.22823 0.95667 0.96234 1.01851 1.23085 0.97187 0.98761 0.95723 0.86437 0.93309 0.91328 0.83807 0.83707 0.84773 0.86273 0.75679 0.76234 0.94051 0.94505 0.97571 0.97350 0.92527 0.88590 0.93140 0.89812 0.89262 0.89753 0.88400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.41 16 2 O -0.32 -7.27 9.16 -92.46 -0.85 -8.11 16 3 C 0.13 3.32 6.54 22.51 0.15 3.47 16 4 C -0.23 -5.31 9.04 22.36 0.20 -5.11 16 5 C -0.09 -1.98 10.04 22.25 0.22 -1.75 16 6 C -0.18 -4.51 10.04 22.28 0.22 -4.28 16 7 C -0.05 -1.48 7.61 22.26 0.17 -1.31 16 8 C -0.12 -3.41 3.88 -19.77 -0.08 -3.49 16 9 C 0.21 5.19 0.55 3.38 0.00 5.19 16 10 N -0.71 -19.42 5.22 -439.02 -2.29 -21.71 16 11 C 0.70 25.62 8.32 179.05 1.49 27.11 16 12 O -0.62 -26.98 14.05 -3.98 -0.06 -27.03 16 13 N -0.74 -27.71 5.56 -478.55 -2.66 -30.37 16 14 C 0.17 7.62 5.61 86.38 0.48 8.10 16 15 C 0.03 1.33 5.09 29.85 0.15 1.48 16 16 C -0.55 -31.32 9.11 25.60 0.23 -31.09 16 17 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 18 C 0.01 0.46 5.46 84.65 0.46 0.92 16 19 N -0.93 -55.05 13.29 21.45 0.28 -54.77 16 20 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 C -0.15 -3.30 6.43 31.12 0.20 -3.10 16 25 C -0.13 -2.10 7.99 31.12 0.25 -1.85 16 26 C -0.11 -1.93 6.32 31.12 0.20 -1.73 16 27 H 0.12 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.05 0.78 7.66 -2.39 -0.02 0.76 16 29 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 30 H 0.14 2.61 6.30 -2.91 -0.02 2.59 16 31 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 32 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.12 3.45 6.82 -2.91 -0.02 3.43 16 34 H 0.41 8.95 8.64 -92.71 -0.80 8.14 16 35 H 0.40 13.08 8.49 -92.71 -0.79 12.30 16 36 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 39 H 0.01 0.44 8.14 -2.38 -0.02 0.43 16 40 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 41 H 0.10 1.96 7.24 -2.39 -0.02 1.94 16 42 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.08 1.34 8.11 -2.39 -0.02 1.32 16 46 H 0.10 1.61 8.09 -2.39 -0.02 1.60 16 Total: -1.00 -72.40 376.31 1.33 -71.06 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -0.59 Total: 30.64 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 5.47 Total: -6.02 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -4.67 Total: -106.85 kcal Atomic # 8 Polarization: -34.24 SS G_CDS: -0.90 Total: -35.15 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -72.40 1.33 -71.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342306447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.897 kcal (2) G-P(sol) polarization free energy of solvation -72.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds