Wall clock time and date at job start Tue Mar 31 2020 12:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99423 * 2 1 4 4 C 1.53001 * 109.46662 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.46421 * 299.97816 * 4 3 2 6 6 O 1.21290 * 119.99909 * 265.00114 * 5 4 3 7 7 N 1.34771 * 120.00240 * 85.00343 * 5 4 3 8 8 C 1.39238 * 120.00157 * 175.70511 * 7 5 4 9 9 C 1.39476 * 119.83282 * 215.02391 * 8 7 5 10 10 C 1.36382 * 120.16568 * 179.71678 * 9 8 7 11 11 C 1.40870 * 119.83091 * 0.53483 * 10 9 8 12 12 C 1.41148 * 120.16495 * 179.76231 * 11 10 9 13 13 H 1.08001 * 119.99826 * 214.75339 * 12 11 10 14 14 C 1.39902 * 120.00104 * 34.75629 * 12 11 10 15 15 N 1.30872 * 120.00134 * 355.58178 * 14 12 11 16 16 Si 1.86802 * 120.00171 * 175.58415 * 14 12 11 17 17 H 1.48499 * 109.47114 * 89.99646 * 16 14 12 18 18 H 1.48498 * 109.47082 * 210.00110 * 16 14 12 19 19 H 1.48497 * 109.46984 * 329.99727 * 16 14 12 20 20 C 1.40876 * 119.66835 * 359.74096 * 11 10 9 21 21 C 1.36373 * 119.82936 * 359.97438 * 20 11 10 22 22 C 1.53042 * 109.45910 * 179.97438 * 4 3 2 23 23 C 1.53119 * 109.27657 * 180.80439 * 22 4 3 24 24 C 1.53121 * 109.16263 * 57.65643 * 23 22 4 25 25 C 1.53038 * 109.27710 * 302.34413 * 24 23 22 26 26 N 1.46845 * 109.46628 * 59.94820 * 4 3 2 27 27 H 1.09002 * 109.46306 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47000 * 299.99405 * 1 2 3 29 29 H 1.08996 * 109.47541 * 60.00123 * 1 2 3 30 30 H 1.09004 * 109.46998 * 299.99617 * 3 2 1 31 31 H 1.08991 * 109.47278 * 60.00446 * 3 2 1 32 32 H 0.97001 * 119.99901 * 355.70034 * 7 5 4 33 33 H 1.07995 * 119.92157 * 0.02562 * 9 8 7 34 34 H 1.07996 * 120.08406 * 180.29168 * 10 9 8 35 35 H 0.96997 * 120.00612 * 180.02562 * 15 14 12 36 36 H 1.08002 * 120.08295 * 180.02562 * 20 11 10 37 37 H 1.07996 * 119.91730 * 180.02562 * 21 20 11 38 38 H 1.09005 * 109.50306 * 300.74395 * 22 4 3 39 39 H 1.08996 * 109.50190 * 60.86452 * 22 4 3 40 40 H 1.08999 * 109.52194 * 177.55691 * 23 22 4 41 41 H 1.08993 * 109.52742 * 297.68668 * 23 22 4 42 42 H 1.09004 * 109.50460 * 62.28022 * 24 23 22 43 43 H 1.08995 * 109.50463 * 182.40516 * 24 23 22 44 44 H 1.09001 * 109.46463 * 179.19388 * 25 24 23 45 45 H 1.09001 * 109.46332 * 299.17763 * 25 24 23 46 46 H 1.00906 * 110.99846 * 305.85882 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9804 0.4372 1.2298 6 8 4.3185 1.0482 2.2215 7 7 4.0028 -0.9103 1.2283 8 6 4.4981 -1.5996 2.3321 9 6 5.1964 -2.7930 2.1487 10 6 5.6895 -3.4707 3.2246 11 6 5.4822 -2.9684 4.5243 12 6 5.9850 -3.6667 5.6432 13 1 5.4317 -3.6706 6.5706 14 6 7.2002 -4.3537 5.5507 15 7 7.8279 -4.4218 4.4044 16 14 7.9268 -5.1741 7.0635 17 1 7.4294 -6.5702 7.1565 18 1 9.4081 -5.1822 6.9588 19 1 7.5206 -4.4219 8.2777 20 6 4.7708 -1.7654 4.7017 21 6 4.2889 -1.0959 3.6158 22 6 4.1575 2.5831 -0.0013 23 6 5.6834 2.4574 -0.0222 24 6 6.1045 1.6516 -1.2543 25 6 5.4259 0.2804 -1.2173 26 7 3.9680 0.4552 -1.1994 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.6885 1.8464 -0.8901 31 1 1.6886 1.8464 0.8899 32 1 3.6739 -1.4000 0.4583 33 1 5.3514 -3.1788 1.1520 34 1 6.2341 -4.3922 3.0809 35 1 8.6702 -4.8984 4.3401 36 1 4.6084 -1.3740 5.6951 37 1 3.7437 -0.1733 3.7502 38 1 3.8252 3.1288 -0.8844 39 1 3.8488 3.1191 0.8961 40 1 6.1301 3.4506 -0.0665 41 1 6.0193 1.9468 0.8803 42 1 5.8027 2.1827 -2.1571 43 1 7.1868 1.5222 -1.2520 44 1 5.7124 -0.2906 -2.1006 45 1 5.7386 -0.2556 -0.3212 46 1 3.4965 -0.4340 -1.2712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578977786.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:36 Heat of formation + Delta-G solvation = -78.538366 kcal Electronic energy + Delta-G solvation = -27776.431835 eV Core-core repulsion = 24050.680524 eV Total energy + Delta-G solvation = -3725.751310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.12294 -39.80944 -38.62042 -38.06199 -36.26928 -34.82042 -33.37565 -32.68887 -31.50914 -30.71114 -28.30966 -27.08672 -26.48248 -24.51402 -24.36944 -23.18888 -22.51010 -21.72954 -20.13824 -19.27458 -18.64510 -17.98194 -17.46579 -17.26074 -17.03682 -16.74476 -16.19890 -15.82737 -15.52298 -15.31759 -15.12775 -14.72627 -14.61275 -14.49778 -14.13122 -14.04007 -14.00566 -13.61452 -13.27324 -13.16929 -12.95054 -12.87227 -12.75384 -12.69079 -12.47906 -12.26020 -11.83362 -11.69756 -11.56803 -11.43080 -11.35334 -11.23747 -11.00567 -10.67696 -10.59341 -9.58580 -9.45087 -8.75368 -8.52627 -6.35755 0.75445 1.09367 1.37964 1.42673 1.52054 1.76424 2.20182 2.23559 2.67589 2.78021 3.03687 3.60447 3.63645 3.75359 3.89347 4.01072 4.20706 4.26022 4.33448 4.39613 4.46931 4.49280 4.56781 4.58228 4.64640 4.72328 4.77589 4.88306 4.90485 4.92520 5.03267 5.07903 5.11082 5.13758 5.17251 5.31792 5.39667 5.43690 5.65303 5.74613 5.88304 5.99588 6.10263 6.13601 6.26245 6.35361 6.63433 6.68670 6.93836 6.96536 7.33721 8.40192 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.018496 B = 0.003475 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.437231 B = 8056.627947 C = 8689.093547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.410 6.410 3 C 0.078 3.922 4 C 0.115 3.885 5 C 0.484 3.516 6 O -0.572 6.572 7 N -0.637 5.637 8 C 0.023 3.977 9 C -0.120 4.120 10 C -0.156 4.156 11 C 0.069 3.931 12 C -0.499 4.499 13 H 0.072 0.928 14 C 0.029 3.971 15 N -0.841 5.841 16 Si 0.989 3.011 17 H -0.258 1.258 18 H -0.269 1.269 19 H -0.263 1.263 20 C -0.221 4.221 21 C -0.096 4.096 22 C -0.088 4.088 23 C -0.128 4.128 24 C -0.111 4.111 25 C 0.043 3.957 26 N -0.649 5.649 27 H 0.093 0.907 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.408 0.592 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.285 0.715 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.028 0.972 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.010 0.990 46 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.952 9.382 -15.048 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.329 6.329 3 C 0.001 3.999 4 C 0.019 3.981 5 C 0.271 3.729 6 O -0.450 6.450 7 N -0.281 5.281 8 C -0.070 4.070 9 C -0.140 4.140 10 C -0.176 4.176 11 C 0.066 3.934 12 C -0.530 4.530 13 H 0.090 0.910 14 C -0.183 4.183 15 N -0.469 5.469 16 Si 0.810 3.190 17 H -0.183 1.183 18 H -0.193 1.193 19 H -0.187 1.187 20 C -0.241 4.241 21 C -0.116 4.116 22 C -0.126 4.126 23 C -0.165 4.165 24 C -0.149 4.149 25 C -0.086 4.086 26 N -0.283 5.283 27 H 0.111 0.889 28 H 0.057 0.943 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.071 0.929 32 H 0.245 0.755 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.047 0.953 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.119 0.881 45 H 0.029 0.971 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.390 10.123 -14.889 19.863 hybrid contribution 0.318 -1.194 1.518 1.957 sum -8.071 8.929 -13.372 17.991 Atomic orbital electron populations 1.22882 0.78946 1.03764 1.00878 1.87778 1.21894 1.27639 1.95631 1.22558 0.89149 0.85717 1.02498 1.21393 0.95559 0.96042 0.85072 1.22267 0.77057 0.82428 0.91140 1.90642 1.49190 1.68337 1.36859 1.42954 1.60952 1.06233 1.17941 1.17355 1.06364 0.96718 0.86600 1.20524 0.99061 0.95794 0.98661 1.21162 1.02943 1.01303 0.92209 1.18012 0.90509 0.90712 0.94140 1.19722 1.05875 1.29073 0.98305 0.90956 1.26740 0.96679 0.94394 1.00501 1.69822 1.15437 1.34764 1.26888 0.85097 0.77578 0.78857 0.77488 1.18297 1.19317 1.18713 1.20923 1.08725 0.97241 0.97208 1.20458 1.00413 0.98908 0.91848 1.21403 0.95256 0.92297 1.03639 1.21615 0.95841 1.01273 0.97811 1.21580 0.99741 0.94957 0.98626 1.22166 0.87308 0.98205 1.00961 1.60555 1.06449 1.25905 1.35404 0.88852 0.94268 0.91764 0.88329 0.92871 0.75527 0.86256 0.86248 0.90440 0.88708 0.87864 0.87324 0.91470 0.89892 0.95326 0.88948 0.91347 0.88090 0.97150 0.82642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.41 -8.96 9.33 -148.98 -1.39 -10.35 16 3 C 0.08 1.60 5.01 71.98 0.36 1.96 16 4 C 0.11 2.83 0.72 2.80 0.00 2.83 16 5 C 0.48 17.14 4.25 87.66 0.37 17.51 16 6 O -0.57 -25.29 12.46 -3.06 -0.04 -25.33 16 7 N -0.64 -23.12 4.12 -303.12 -1.25 -24.37 16 8 C 0.02 1.07 6.31 38.56 0.24 1.31 16 9 C -0.12 -5.65 9.90 22.13 0.22 -5.43 16 10 C -0.16 -8.40 8.62 22.48 0.19 -8.21 16 11 C 0.07 3.90 5.55 -21.28 -0.12 3.78 16 12 C -0.50 -28.10 9.02 23.39 0.21 -27.89 16 13 H 0.07 3.94 7.85 -2.91 -0.02 3.92 16 14 C 0.03 1.50 5.42 85.24 0.46 1.96 16 15 N -0.84 -45.16 10.59 21.82 0.23 -44.93 16 16 Si 0.99 39.78 29.56 68.60 2.03 41.81 16 17 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 18 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 19 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 20 C -0.22 -11.99 9.74 22.48 0.22 -11.77 16 21 C -0.10 -4.89 8.61 22.14 0.19 -4.70 16 22 C -0.09 -1.99 4.53 30.65 0.14 -1.85 16 23 C -0.13 -3.18 5.72 30.67 0.18 -3.01 16 24 C -0.11 -2.32 6.09 30.65 0.19 -2.13 16 25 C 0.04 0.97 6.22 86.33 0.54 1.51 16 26 N -0.65 -13.56 6.14 -474.00 -2.91 -16.47 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.41 12.38 7.28 -92.71 -0.67 11.70 16 33 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 34 H 0.12 6.66 6.13 -2.91 -0.02 6.64 16 35 H 0.28 13.87 8.30 -92.71 -0.77 13.10 16 36 H 0.09 4.96 8.06 -2.91 -0.02 4.93 16 37 H 0.10 5.25 6.22 -2.91 -0.02 5.23 16 38 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.07 1.67 7.84 -2.39 -0.02 1.65 16 40 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.03 0.97 6.58 -2.39 -0.02 0.95 16 42 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.01 0.31 6.39 -2.39 -0.02 0.29 16 46 H 0.35 7.07 6.86 -89.69 -0.61 6.46 16 Total: -1.00 -68.51 361.23 1.03 -67.48 By element: Atomic # 1 Polarization: 44.83 SS G_CDS: -0.29 Total: 44.54 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 4.64 Total: -32.39 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -3.93 Total: -85.76 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -1.43 Total: -35.67 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -68.51 1.03 -67.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578977786.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.059 kcal (2) G-P(sol) polarization free energy of solvation -68.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds