Wall clock time and date at job start Tue Mar 31 2020 12:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35902 * 116.99827 * 2 1 4 4 C 1.38754 * 120.05950 * 0.25197 * 3 2 1 5 5 C 1.38119 * 119.94599 * 180.25573 * 4 3 2 6 6 C 1.38291 * 120.05608 * 359.46929 * 5 4 3 7 7 C 1.38246 * 120.11001 * 0.28224 * 6 5 4 8 8 C 1.50701 * 119.97069 * 179.97438 * 7 6 5 9 9 C 1.50701 * 109.47064 * 89.99828 * 8 7 6 10 10 O 1.21280 * 119.99973 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99937 * 180.02562 * 9 8 7 12 12 C 1.47428 * 125.64852 * 355.09704 * 11 9 8 13 13 C 1.54910 * 104.83370 * 155.83734 * 12 11 9 14 14 C 1.55162 * 101.58207 * 37.00883 * 13 12 11 15 15 C 1.47025 * 125.64824 * 174.79285 * 11 9 8 16 16 H 1.08998 * 109.88195 * 300.50808 * 15 11 9 17 17 C 1.52998 * 109.88608 * 61.67611 * 15 11 9 18 18 N 1.46498 * 109.47198 * 185.23546 * 17 15 11 19 19 C 1.36933 * 119.99972 * 185.01310 * 18 17 15 20 20 H 1.08004 * 120.00103 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00105 * 179.97438 * 19 18 17 22 22 N 1.31612 * 120.00025 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99976 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46961 * 60.00121 * 23 21 19 25 25 H 1.48503 * 109.46893 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47086 * 300.00245 * 23 21 19 27 27 C 1.38171 * 120.05643 * 359.97438 * 7 6 5 28 28 H 1.08996 * 109.47092 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47088 * 300.00641 * 1 2 3 30 30 H 1.09002 * 109.47190 * 59.99926 * 1 2 3 31 31 H 1.08001 * 120.02557 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.97120 * 179.74868 * 5 4 3 33 33 H 1.07994 * 119.94280 * 180.25241 * 6 5 4 34 34 H 1.09000 * 109.47134 * 209.99207 * 8 7 6 35 35 H 1.08997 * 109.47460 * 329.99358 * 8 7 6 36 36 H 1.09009 * 110.36624 * 274.67596 * 12 11 9 37 37 H 1.08991 * 110.36628 * 36.99488 * 12 11 9 38 38 H 1.08995 * 111.00413 * 155.08022 * 13 12 11 39 39 H 1.08996 * 111.00296 * 278.89900 * 13 12 11 40 40 H 1.08995 * 110.71777 * 82.85921 * 14 13 12 41 41 H 1.08993 * 110.71909 * 205.95966 * 14 13 12 42 42 H 1.09004 * 109.46903 * 305.23411 * 17 15 11 43 43 H 1.08999 * 109.47090 * 65.22791 * 17 15 11 44 44 H 0.96998 * 119.99697 * 5.01051 * 18 17 15 45 45 H 0.96995 * 120.00507 * 180.02562 * 22 21 19 46 46 H 1.07995 * 120.02925 * 180.02562 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3754 0.0053 5 6 1.9208 3.6048 -0.0001 6 6 3.3019 3.6759 0.0004 7 6 4.0560 2.5172 0.0003 8 6 5.5608 2.5983 0.0003 9 6 6.0624 2.6253 1.4211 10 8 5.2755 2.5834 2.3429 11 7 7.3856 2.6972 1.6673 12 6 8.4524 2.6527 0.6507 13 6 9.6573 3.3703 1.3087 14 6 9.5313 2.9027 2.7828 15 6 8.0039 2.8391 2.9936 16 1 7.6550 3.7558 3.4690 17 6 7.6514 1.6313 3.8641 18 7 8.1658 1.8397 5.2199 19 6 8.0600 0.8432 6.1530 20 1 7.5970 -0.0964 5.8896 21 6 8.5479 1.0404 7.4375 22 7 9.1117 2.1855 7.7587 23 14 8.4043 -0.3194 8.7103 24 1 9.1297 -1.5236 8.2320 25 1 8.9961 0.1387 9.9930 26 1 6.9724 -0.6539 8.9178 27 6 3.4311 1.2848 0.0003 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2128 2.3204 0.0090 32 1 1.3339 4.5114 -0.0001 33 1 3.7921 4.6381 0.0003 34 1 5.9715 1.7291 -0.5135 35 1 5.8757 3.5064 -0.5136 36 1 8.7086 1.6198 0.4146 37 1 8.1408 3.1823 -0.2495 38 1 10.5978 3.0350 0.8716 39 1 9.5569 4.4528 1.2316 40 1 9.9838 1.9201 2.9157 41 1 9.9842 3.6289 3.4577 42 1 6.5683 1.5135 3.9006 43 1 8.1004 0.7337 3.4390 44 1 8.5813 2.6837 5.4565 45 1 9.4530 2.3233 8.6561 46 1 4.0206 0.3800 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666478831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:46 Heat of formation + Delta-G solvation = -55.598053 kcal Electronic energy + Delta-G solvation = -26380.124951 eV Core-core repulsion = 22655.368408 eV Total energy + Delta-G solvation = -3724.756544 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47320 -40.84934 -38.97668 -38.06860 -36.43280 -33.94608 -33.27512 -32.45162 -31.44048 -30.38436 -28.63415 -27.89202 -26.73557 -24.83729 -23.67055 -23.43520 -22.45077 -21.60753 -20.19664 -19.12119 -18.67790 -18.02845 -17.52509 -17.22612 -16.95857 -16.65226 -16.48965 -16.17588 -15.64335 -15.25614 -15.14737 -15.04541 -14.85233 -14.60038 -14.26020 -13.97240 -13.78370 -13.59459 -13.37218 -13.13048 -12.91127 -12.89701 -12.79630 -12.68979 -12.48770 -12.24749 -12.02881 -11.97961 -11.91764 -11.79526 -11.75258 -11.57043 -11.04996 -10.81053 -9.80303 -9.63555 -9.15186 -9.06017 -7.99720 -5.29631 0.30452 0.49810 1.42570 1.47142 1.53242 1.66669 1.98082 2.37151 2.53367 2.81262 3.32406 3.55363 3.67551 3.69651 3.86621 3.93460 4.03206 4.11934 4.13974 4.21882 4.30288 4.34351 4.36382 4.37901 4.40395 4.50945 4.55179 4.60948 4.69758 4.76269 4.79539 4.87497 4.97774 5.05839 5.07452 5.15534 5.17765 5.32021 5.37040 5.41532 5.46024 5.49743 5.60706 5.81746 6.21783 6.45319 6.61694 7.22640 7.28152 7.99716 8.27645 9.23429 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.011468 B = 0.003202 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.986716 B = 8741.386936 C =10527.161926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.108 3.892 4 C -0.214 4.214 5 C -0.085 4.085 6 C -0.153 4.153 7 C -0.038 4.038 8 C -0.085 4.085 9 C 0.517 3.483 10 O -0.580 6.580 11 N -0.613 5.613 12 C 0.093 3.907 13 C -0.119 4.119 14 C -0.118 4.118 15 C 0.138 3.862 16 H 0.050 0.950 17 C 0.153 3.847 18 N -0.736 5.736 19 C -0.253 4.253 20 H 0.065 0.935 21 C -0.069 4.069 22 N -0.966 5.966 23 Si 0.976 3.024 24 H -0.274 1.274 25 H -0.287 1.287 26 H -0.283 1.283 27 C -0.162 4.162 28 H 0.117 0.883 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.139 0.861 34 H 0.128 0.872 35 H 0.141 0.859 36 H 0.080 0.920 37 H 0.117 0.883 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.000 1.000 43 H 0.018 0.982 44 H 0.376 0.624 45 H 0.254 0.746 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.396 3.501 -26.422 28.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.063 3.937 4 C -0.232 4.232 5 C -0.103 4.103 6 C -0.171 4.171 7 C -0.039 4.039 8 C -0.124 4.124 9 C 0.308 3.692 10 O -0.460 6.460 11 N -0.348 5.348 12 C -0.028 4.028 13 C -0.157 4.157 14 C -0.156 4.156 15 C 0.033 3.967 16 H 0.068 0.932 17 C 0.025 3.975 18 N -0.380 5.380 19 C -0.385 4.385 20 H 0.083 0.917 21 C -0.262 4.262 22 N -0.616 5.616 23 Si 0.804 3.196 24 H -0.199 1.199 25 H -0.213 1.213 26 H -0.210 1.210 27 C -0.181 4.181 28 H 0.135 0.865 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.166 0.834 32 H 0.169 0.831 33 H 0.156 0.844 34 H 0.146 0.854 35 H 0.159 0.841 36 H 0.099 0.901 37 H 0.135 0.865 38 H 0.129 0.871 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.018 0.982 43 H 0.036 0.964 44 H 0.208 0.792 45 H 0.063 0.937 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.865 3.107 -25.918 27.905 hybrid contribution -0.312 -0.451 1.618 1.708 sum -10.177 2.656 -24.300 26.479 Atomic orbital electron populations 1.23323 0.76500 1.05464 1.02209 1.86038 1.23523 1.27122 1.88876 1.19189 0.92475 0.84981 0.97080 1.21500 1.01061 0.92073 1.08607 1.21258 0.94633 0.97875 0.96528 1.21211 0.94452 0.98278 1.03191 1.19296 0.94841 0.92534 0.97194 1.20719 0.91547 1.08083 0.92008 1.21011 0.80428 0.75419 0.92381 1.90764 1.55839 1.51010 1.48343 1.48684 1.05648 1.72350 1.08090 1.22720 0.86245 1.02206 0.91601 1.22818 0.99018 1.01289 0.92555 1.22563 0.91536 1.02475 0.99074 1.21506 0.94837 0.96346 0.83964 0.93229 1.20956 0.95412 0.95973 0.85153 1.42313 1.71612 1.16536 1.07494 1.19515 1.31839 0.95122 0.92039 0.91661 1.25570 1.01442 0.99829 0.99346 1.69794 1.46189 1.25379 1.20217 0.85183 0.77638 0.78587 0.78167 1.19949 1.21295 1.20955 1.20422 0.92121 0.98471 1.07042 0.86510 0.92356 0.91057 0.83405 0.83140 0.84361 0.85434 0.84085 0.90128 0.86516 0.87110 0.89494 0.91390 0.90732 0.98184 0.96407 0.79197 0.93687 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.40 16 2 O -0.34 -8.44 10.50 -92.45 -0.97 -9.41 16 3 C 0.11 2.81 6.69 22.51 0.15 2.96 16 4 C -0.21 -4.60 9.04 22.36 0.20 -4.40 16 5 C -0.09 -1.73 10.04 22.25 0.22 -1.51 16 6 C -0.15 -3.39 9.70 22.28 0.22 -3.18 16 7 C -0.04 -0.93 4.37 -19.88 -0.09 -1.01 16 8 C -0.08 -1.64 4.76 29.10 0.14 -1.50 16 9 C 0.52 16.04 7.66 87.66 0.67 16.71 16 10 O -0.58 -25.19 14.82 -3.03 -0.04 -25.23 16 11 N -0.61 -17.39 3.07 -788.05 -2.42 -19.80 16 12 C 0.09 1.55 6.74 86.85 0.59 2.13 16 13 C -0.12 -2.03 7.08 31.99 0.23 -1.80 16 14 C -0.12 -3.43 6.23 31.78 0.20 -3.24 16 15 C 0.14 5.03 2.95 45.34 0.13 5.16 16 16 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 17 C 0.15 7.28 5.66 86.38 0.49 7.77 16 18 N -0.74 -41.40 5.41 -343.45 -1.86 -43.26 16 19 C -0.25 -15.48 9.99 84.03 0.84 -14.64 16 20 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 21 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 22 N -0.97 -61.17 13.06 21.65 0.28 -60.89 16 23 Si 0.98 48.50 29.55 68.60 2.03 50.52 16 24 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 27 C -0.16 -4.40 9.64 22.37 0.22 -4.19 16 28 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 0.81 7.65 -2.39 -0.02 0.80 16 30 H 0.07 0.78 7.67 -2.39 -0.02 0.76 16 31 H 0.15 2.33 6.30 -2.91 -0.02 2.31 16 32 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 33 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 34 H 0.13 1.83 8.08 -2.39 -0.02 1.81 16 35 H 0.14 1.65 7.89 -2.39 -0.02 1.63 16 36 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.12 1.01 7.47 -2.39 -0.02 1.00 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 2.16 7.77 -2.39 -0.02 2.15 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.00 0.01 6.55 -2.38 -0.02 0.00 16 43 H 0.02 0.85 8.01 -2.39 -0.02 0.83 16 44 H 0.38 21.78 7.61 -92.71 -0.71 21.07 16 45 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 46 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -84.87 377.77 3.07 -81.80 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.27 Total: 29.36 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 5.78 Total: -3.08 kcal Atomic # 7 Polarization: -119.96 SS G_CDS: -3.99 Total: -123.95 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -1.02 Total: -34.64 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.52 kcal Total: -84.87 3.07 -81.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666478831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.197 kcal (2) G-P(sol) polarization free energy of solvation -84.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds