Wall clock time and date at job start Tue Mar 31 2020 12:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35898 * 117.00222 * 2 1 4 4 C 1.38753 * 120.05430 * 359.97438 * 3 2 1 5 5 C 1.38117 * 119.94746 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05396 * 0.02562 * 5 4 3 7 7 C 1.38240 * 120.11095 * 359.96017 * 6 5 4 8 8 C 1.50698 * 119.97284 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47478 * 90.00030 * 8 7 6 10 10 O 1.21287 * 119.99234 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00539 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99924 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47093 * 180.02562 * 12 11 9 14 14 H 1.08997 * 110.77580 * 51.76189 * 13 12 11 15 15 C 1.55154 * 110.72254 * 174.99951 * 13 12 11 16 16 C 1.54908 * 101.58289 * 153.86462 * 15 13 12 17 17 N 1.47425 * 104.92961 * 322.93718 * 16 15 13 18 18 C 1.36938 * 125.65179 * 204.15650 * 17 16 15 19 19 H 1.07995 * 120.00281 * 180.02562 * 18 17 16 20 20 C 1.38810 * 119.99650 * 0.02562 * 18 17 16 21 21 N 1.31621 * 120.00025 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00113 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47166 * 59.99694 * 22 20 18 24 24 H 1.48493 * 109.47565 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47135 * 300.00010 * 22 20 18 26 26 C 1.47290 * 108.55742 * 24.15407 * 17 16 15 27 27 C 1.38159 * 120.05768 * 0.27327 * 7 6 5 28 28 H 1.09002 * 109.47253 * 60.00107 * 1 2 3 29 29 H 1.08998 * 109.47320 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47412 * 300.00760 * 1 2 3 31 31 H 1.08008 * 120.02984 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.97798 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.94488 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.47638 * 330.00010 * 8 7 6 35 35 H 1.09003 * 109.47500 * 210.00202 * 8 7 6 36 36 H 0.96994 * 119.99369 * 359.97438 * 11 9 8 37 37 H 1.09000 * 109.47310 * 60.00424 * 12 11 9 38 38 H 1.09004 * 109.47167 * 299.99783 * 12 11 9 39 39 H 1.09008 * 111.00345 * 35.78931 * 15 13 12 40 40 H 1.09000 * 111.03743 * 271.95898 * 15 13 12 41 41 H 1.09002 * 110.36632 * 81.83114 * 16 15 13 42 42 H 1.08995 * 110.36781 * 204.04351 * 16 15 13 43 43 H 0.97001 * 119.99611 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.85762 * 239.50064 * 26 17 16 45 45 H 1.08995 * 110.00297 * 118.43011 * 26 17 16 46 46 H 1.08005 * 120.03086 * 179.73996 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3018 3.6757 -0.0016 7 6 4.0559 2.5171 -0.0008 8 6 5.5607 2.5982 -0.0019 9 6 6.0634 2.6268 1.4185 10 8 5.2770 2.5851 2.3409 11 7 7.3867 2.6989 1.6638 12 6 7.8752 2.7274 3.0446 13 6 9.4029 2.8108 3.0434 14 1 9.7449 3.6303 2.4114 15 6 9.9452 2.9690 4.4885 16 6 11.3646 2.3627 4.3562 17 7 11.2087 1.2306 3.4248 18 6 12.0301 0.1373 3.3530 19 1 11.8302 -0.6419 2.6325 20 6 13.1198 0.0306 4.2063 21 7 13.3631 0.9801 5.0848 22 14 14.2407 -1.4604 4.1079 23 1 14.8385 -1.5416 2.7509 24 1 15.3221 -1.3343 5.1178 25 1 13.4531 -2.6904 4.3763 26 6 10.0225 1.4734 2.5862 27 6 3.4311 1.2849 -0.0051 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 0.2127 2.3204 -0.0005 32 1 1.3340 4.5114 -0.0019 33 1 3.7922 4.6381 -0.0024 34 1 5.8754 3.5058 -0.5171 35 1 5.9711 1.7284 -0.5151 36 1 8.0155 2.7319 0.9260 37 1 7.5610 1.8198 3.5599 38 1 7.4646 3.5972 3.5574 39 1 9.3420 2.4006 5.1965 40 1 9.9941 4.0194 4.7753 41 1 12.0550 3.0995 3.9455 42 1 11.7186 2.0109 5.3251 43 1 14.1248 0.9057 5.6808 44 1 9.3025 0.6661 2.7206 45 1 10.3140 1.5391 1.5380 46 1 4.0206 0.3799 -0.0087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753138549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:40 Heat of formation + Delta-G solvation = -27.738947 kcal Electronic energy + Delta-G solvation = -25601.126963 eV Core-core repulsion = 21877.578481 eV Total energy + Delta-G solvation = -3723.548482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.49638 -39.58944 -37.88900 -37.37367 -34.60489 -32.93076 -32.41323 -30.74815 -29.87360 -28.59362 -27.75156 -27.18148 -25.37698 -23.51652 -22.76637 -21.68154 -20.60921 -19.94092 -19.56781 -18.03016 -17.12740 -16.68340 -16.56817 -16.22581 -15.99464 -15.96846 -15.34307 -14.89951 -14.62105 -14.19723 -13.93730 -13.80061 -13.51290 -13.42349 -12.94994 -12.72159 -12.49241 -12.30766 -12.03605 -11.82589 -11.74795 -11.63355 -11.48131 -11.32098 -11.06190 -10.95483 -10.78608 -10.40856 -10.15320 -10.02484 -9.92004 -9.73923 -9.50628 -9.00646 -8.93040 -8.64558 -8.38551 -6.83366 -5.64961 -3.06758 1.08784 1.27973 2.69073 2.99306 3.22877 3.40786 3.44868 3.46283 3.67406 4.41756 4.48824 4.54784 4.77090 4.80272 4.83127 4.88987 4.96255 5.10943 5.14880 5.17134 5.21879 5.26767 5.36053 5.40892 5.48766 5.53335 5.71113 5.81782 5.89884 6.07612 6.08726 6.12956 6.21151 6.35478 6.37861 6.46997 6.53083 6.56118 6.59333 6.73505 6.91438 7.17080 7.51372 7.57428 7.62319 7.86009 8.28786 8.36834 9.22321 9.83136 10.48424 11.38832 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022076 B = 0.002134 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.050147 B =13120.747403 C =13917.652633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.127 3.873 4 C -0.210 4.210 5 C -0.080 4.080 6 C -0.142 4.142 7 C -0.023 4.023 8 C -0.105 4.105 9 C 0.512 3.488 10 O -0.535 6.535 11 N -0.726 5.726 12 C 0.133 3.867 13 C -0.114 4.114 14 H 0.076 0.924 15 C -0.136 4.136 16 C 0.151 3.849 17 N -0.605 5.605 18 C -0.223 4.223 19 H 0.076 0.924 20 C -0.012 4.012 21 N -0.923 5.923 22 Si 0.915 3.085 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.141 3.859 27 C -0.136 4.136 28 H 0.054 0.946 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.401 0.599 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.012 0.988 42 H 0.107 0.893 43 H 0.252 0.748 44 H 0.024 0.976 45 H 0.018 0.982 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.137 5.973 -12.532 26.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.232 6.232 3 C 0.082 3.918 4 C -0.229 4.229 5 C -0.098 4.098 6 C -0.160 4.160 7 C -0.024 4.024 8 C -0.145 4.145 9 C 0.297 3.703 10 O -0.412 6.412 11 N -0.378 5.378 12 C 0.009 3.991 13 C -0.133 4.133 14 H 0.094 0.906 15 C -0.175 4.175 16 C 0.026 3.974 17 N -0.331 5.331 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.571 5.571 22 Si 0.746 3.254 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.015 3.985 27 C -0.155 4.155 28 H 0.073 0.927 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.235 0.765 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.030 0.970 42 H 0.125 0.875 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.036 0.964 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -23.419 5.650 -11.741 26.800 hybrid contribution 0.678 -0.560 -0.440 0.983 sum -22.741 5.090 -12.181 26.295 Atomic orbital electron populations 1.23042 0.78491 1.03896 1.01265 1.86077 1.21302 1.27003 1.88792 1.18936 0.92207 0.84133 0.96562 1.21197 0.99856 0.92478 1.09379 1.20858 0.94472 0.96926 0.97582 1.20888 0.93810 0.97820 1.03501 1.19036 0.93772 0.92553 0.97039 1.20714 0.92763 1.05604 0.95436 1.20417 0.82382 0.76510 0.90959 1.90734 1.55305 1.48951 1.46176 1.46091 1.06908 1.75058 1.09728 1.21451 0.93655 1.02069 0.81887 1.22436 0.92281 0.99099 0.99499 0.90585 1.23007 1.00474 1.00053 0.93945 1.21934 0.89583 0.87943 0.97908 1.44557 1.28104 1.21312 1.39127 1.19026 1.04095 0.96516 1.15460 0.90592 1.24795 0.98794 0.98521 0.98651 1.69786 1.30248 1.33032 1.24074 0.86141 0.80132 0.82008 0.77143 1.21239 1.21565 1.21149 1.21383 0.89928 0.93214 0.93988 1.20238 0.91436 0.98120 1.05696 0.92742 0.88272 0.92661 0.85670 0.85803 0.85984 0.87628 0.87586 0.76461 0.91282 0.91730 0.91856 0.92144 0.97044 0.87524 0.93679 0.95791 0.96382 0.85269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.48 10.50 -19.42 -0.20 -3.68 16 3 C 0.13 1.46 6.69 -39.22 -0.26 1.19 16 4 C -0.21 -2.06 9.04 -39.44 -0.36 -2.42 16 5 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 6 C -0.14 -1.45 9.70 -39.56 -0.38 -1.84 16 7 C -0.02 -0.26 4.37 -104.65 -0.46 -0.72 16 8 C -0.11 -0.97 5.83 -29.03 -0.17 -1.14 16 9 C 0.51 6.69 7.82 -10.98 -0.09 6.60 16 10 O -0.54 -9.32 16.03 5.55 0.09 -9.23 16 11 N -0.73 -8.93 5.47 -60.29 -0.33 -9.26 16 12 C 0.13 1.95 5.02 -4.04 -0.02 1.93 16 13 C -0.11 -1.87 2.96 -88.78 -0.26 -2.13 16 14 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.14 -2.51 6.53 -24.58 -0.16 -2.67 16 16 C 0.15 3.64 5.89 -2.53 -0.01 3.63 16 17 N -0.60 -15.46 3.40 -169.86 -0.58 -16.04 16 18 C -0.22 -6.23 10.28 -15.06 -0.15 -6.38 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 21 N -0.92 -26.94 10.09 55.49 0.56 -26.38 16 22 Si 0.92 22.13 29.55 -169.99 -5.02 17.10 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.14 2.84 6.77 -2.92 -0.02 2.82 16 27 C -0.14 -1.62 9.64 -39.44 -0.38 -2.00 16 28 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 31 H 0.13 0.92 6.30 -52.48 -0.33 0.59 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.11 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.11 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.40 3.97 8.47 -40.82 -0.35 3.63 16 37 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.06 1.18 8.05 -51.92 -0.42 0.76 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.11 2.91 5.86 -51.93 -0.30 2.60 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.02 0.50 7.68 -51.93 -0.40 0.10 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 377.19 15.07 5.68 5.68 Total: -1.00 -34.50 377.19 -9.23 -43.73 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.20 Total: 1.62 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -2.23 Total: -3.54 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: -0.35 Total: -51.68 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.11 Total: -12.92 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.50 -9.23 -43.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753138549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.992 kcal (2) G-P(sol) polarization free energy of solvation -34.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds