Wall clock time and date at job start Tue Mar 31 2020 12:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35898 * 117.00222 * 2 1 4 4 C 1.38753 * 120.05430 * 359.97438 * 3 2 1 5 5 C 1.38117 * 119.94746 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05396 * 0.02562 * 5 4 3 7 7 C 1.38240 * 120.11095 * 359.96017 * 6 5 4 8 8 C 1.50698 * 119.97284 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47478 * 90.00030 * 8 7 6 10 10 O 1.21287 * 119.99234 * 0.02562 * 9 8 7 11 11 N 1.34776 * 120.00539 * 180.02562 * 9 8 7 12 12 C 1.46494 * 119.99924 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47093 * 180.02562 * 12 11 9 14 14 H 1.08997 * 110.77580 * 51.76189 * 13 12 11 15 15 C 1.55154 * 110.72254 * 174.99951 * 13 12 11 16 16 C 1.54908 * 101.58289 * 153.86462 * 15 13 12 17 17 N 1.47425 * 104.92961 * 322.93718 * 16 15 13 18 18 C 1.36938 * 125.65179 * 204.15650 * 17 16 15 19 19 H 1.07995 * 120.00281 * 180.02562 * 18 17 16 20 20 C 1.38810 * 119.99650 * 0.02562 * 18 17 16 21 21 N 1.31621 * 120.00025 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00113 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47166 * 59.99694 * 22 20 18 24 24 H 1.48493 * 109.47565 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.47135 * 300.00010 * 22 20 18 26 26 C 1.47290 * 108.55742 * 24.15407 * 17 16 15 27 27 C 1.38159 * 120.05768 * 0.27327 * 7 6 5 28 28 H 1.09002 * 109.47253 * 60.00107 * 1 2 3 29 29 H 1.08998 * 109.47320 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47412 * 300.00760 * 1 2 3 31 31 H 1.08008 * 120.02984 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.97798 * 179.97438 * 5 4 3 33 33 H 1.08002 * 119.94488 * 179.97438 * 6 5 4 34 34 H 1.09004 * 109.47638 * 330.00010 * 8 7 6 35 35 H 1.09003 * 109.47500 * 210.00202 * 8 7 6 36 36 H 0.96994 * 119.99369 * 359.97438 * 11 9 8 37 37 H 1.09000 * 109.47310 * 60.00424 * 12 11 9 38 38 H 1.09004 * 109.47167 * 299.99783 * 12 11 9 39 39 H 1.09008 * 111.00345 * 35.78931 * 15 13 12 40 40 H 1.09000 * 111.03743 * 271.95898 * 15 13 12 41 41 H 1.09002 * 110.36632 * 81.83114 * 16 15 13 42 42 H 1.08995 * 110.36781 * 204.04351 * 16 15 13 43 43 H 0.97001 * 119.99611 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.85762 * 239.50064 * 26 17 16 45 45 H 1.08995 * 110.00297 * 118.43011 * 26 17 16 46 46 H 1.08005 * 120.03086 * 179.73996 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 6 3.3018 3.6757 -0.0016 7 6 4.0559 2.5171 -0.0008 8 6 5.5607 2.5982 -0.0019 9 6 6.0634 2.6268 1.4185 10 8 5.2770 2.5851 2.3409 11 7 7.3867 2.6989 1.6638 12 6 7.8752 2.7274 3.0446 13 6 9.4029 2.8108 3.0434 14 1 9.7449 3.6303 2.4114 15 6 9.9452 2.9690 4.4885 16 6 11.3646 2.3627 4.3562 17 7 11.2087 1.2306 3.4248 18 6 12.0301 0.1373 3.3530 19 1 11.8302 -0.6419 2.6325 20 6 13.1198 0.0306 4.2063 21 7 13.3631 0.9801 5.0848 22 14 14.2407 -1.4604 4.1079 23 1 14.8385 -1.5416 2.7509 24 1 15.3221 -1.3343 5.1178 25 1 13.4531 -2.6904 4.3763 26 6 10.0225 1.4734 2.5862 27 6 3.4311 1.2849 -0.0051 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 0.2127 2.3204 -0.0005 32 1 1.3340 4.5114 -0.0019 33 1 3.7922 4.6381 -0.0024 34 1 5.8754 3.5058 -0.5171 35 1 5.9711 1.7284 -0.5151 36 1 8.0155 2.7319 0.9260 37 1 7.5610 1.8198 3.5599 38 1 7.4646 3.5972 3.5574 39 1 9.3420 2.4006 5.1965 40 1 9.9941 4.0194 4.7753 41 1 12.0550 3.0995 3.9455 42 1 11.7186 2.0109 5.3251 43 1 14.1248 0.9057 5.6808 44 1 9.3025 0.6661 2.7206 45 1 10.3140 1.5391 1.5380 46 1 4.0206 0.3799 -0.0087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753138549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:39 Heat of formation + Delta-G solvation = -50.151780 kcal Electronic energy + Delta-G solvation = -25602.098856 eV Core-core repulsion = 21877.578481 eV Total energy + Delta-G solvation = -3724.520375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.29870 -40.57827 -39.27956 -38.32625 -35.99822 -34.32315 -33.59105 -31.68852 -31.39325 -30.03890 -28.66330 -27.96439 -27.07592 -25.06728 -23.51987 -22.59785 -22.04892 -21.38523 -20.87899 -18.93124 -18.74498 -17.92106 -17.36345 -17.18929 -16.95212 -16.70784 -16.62328 -16.43006 -15.98416 -15.55686 -15.04848 -14.71886 -14.62049 -14.28446 -14.25092 -14.14643 -13.52955 -13.42585 -13.38316 -13.15864 -12.92465 -12.80843 -12.72581 -12.64321 -12.44797 -12.05265 -11.96986 -11.86807 -11.81351 -11.74102 -11.57134 -11.36826 -10.89717 -10.72686 -10.04325 -9.78241 -9.13536 -8.87333 -7.76772 -5.20929 0.33119 0.51778 1.46396 1.49564 1.55926 1.69969 2.22638 2.40709 2.49981 2.87389 3.32402 3.64724 3.68318 3.80141 3.88867 4.00900 4.03478 4.11731 4.15952 4.24951 4.35134 4.37791 4.42220 4.47836 4.54977 4.65986 4.66861 4.71507 4.72350 4.80858 4.85378 4.93122 5.06963 5.10233 5.14312 5.34120 5.37223 5.46134 5.48569 5.51543 5.62996 5.67173 5.83731 5.83866 6.32740 6.47065 6.62034 7.11750 7.31382 7.79682 8.43548 9.24775 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.022076 B = 0.002134 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.050147 B =13120.747403 C =13917.652633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.108 3.892 4 C -0.215 4.215 5 C -0.084 4.084 6 C -0.153 4.153 7 C -0.037 4.037 8 C -0.097 4.097 9 C 0.512 3.488 10 O -0.583 6.583 11 N -0.717 5.717 12 C 0.145 3.855 13 C -0.092 4.092 14 H 0.100 0.900 15 C -0.124 4.124 16 C 0.151 3.849 17 N -0.629 5.629 18 C -0.239 4.239 19 H 0.079 0.921 20 C -0.070 4.070 21 N -0.949 5.949 22 Si 0.980 3.020 23 H -0.277 1.277 24 H -0.293 1.293 25 H -0.279 1.279 26 C 0.137 3.863 27 C -0.163 4.163 28 H 0.069 0.931 29 H 0.116 0.884 30 H 0.061 0.939 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.125 0.875 36 H 0.416 0.584 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.089 0.911 41 H -0.008 1.008 42 H 0.070 0.930 43 H 0.247 0.753 44 H 0.018 0.982 45 H 0.032 0.968 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.465 6.960 -14.240 29.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.257 6.257 3 C 0.063 3.937 4 C -0.233 4.233 5 C -0.102 4.102 6 C -0.171 4.171 7 C -0.037 4.037 8 C -0.136 4.136 9 C 0.300 3.700 10 O -0.463 6.463 11 N -0.369 5.369 12 C 0.020 3.980 13 C -0.111 4.111 14 H 0.118 0.882 15 C -0.163 4.163 16 C 0.026 3.974 17 N -0.356 5.356 18 C -0.368 4.368 19 H 0.097 0.903 20 C -0.262 4.262 21 N -0.599 5.599 22 Si 0.808 3.192 23 H -0.203 1.203 24 H -0.219 1.219 25 H -0.205 1.205 26 C 0.012 3.988 27 C -0.182 4.182 28 H 0.087 0.913 29 H 0.134 0.866 30 H 0.079 0.921 31 H 0.165 0.835 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.143 0.857 36 H 0.253 0.747 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.108 0.892 41 H 0.010 0.990 42 H 0.088 0.912 43 H 0.056 0.944 44 H 0.036 0.964 45 H 0.050 0.950 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -24.760 6.640 -13.500 28.972 hybrid contribution 1.019 -0.884 0.076 1.351 sum -23.741 5.756 -13.425 27.875 Atomic orbital electron populations 1.23320 0.76493 1.05442 1.02234 1.86039 1.23520 1.27209 1.88882 1.19190 0.92477 0.84937 0.97077 1.21500 1.01037 0.92099 1.08701 1.21256 0.94654 0.97826 0.96461 1.21219 0.94399 0.98311 1.03206 1.19281 0.94817 0.92504 0.97108 1.20764 0.91719 1.08162 0.92995 1.21045 0.81896 0.75036 0.92051 1.90718 1.56436 1.51139 1.47971 1.45962 1.07232 1.74578 1.09167 1.21142 0.92156 1.01377 0.83277 1.22273 0.93087 0.97649 0.98065 0.88199 1.22852 0.96710 1.01227 0.95496 1.21732 0.92536 0.87410 0.95714 1.44887 1.29193 1.21057 1.40438 1.19412 1.04608 0.97480 1.15316 0.90267 1.25648 1.00505 1.01364 0.98693 1.70051 1.30440 1.34667 1.24724 0.85123 0.78033 0.78824 0.77176 1.20276 1.21949 1.20496 1.21569 0.88188 0.95090 0.93976 1.20430 0.92088 0.98507 1.07176 0.91285 0.86584 0.92078 0.83488 0.83155 0.84235 0.84227 0.85701 0.74743 0.93507 0.90931 0.92238 0.89201 0.99047 0.91231 0.94357 0.96375 0.95018 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.47 10.50 -92.40 -0.97 -8.44 16 3 C 0.11 2.46 6.69 22.51 0.15 2.61 16 4 C -0.21 -3.91 9.04 22.36 0.20 -3.71 16 5 C -0.08 -1.42 10.04 22.25 0.22 -1.19 16 6 C -0.15 -2.84 9.70 22.28 0.22 -2.62 16 7 C -0.04 -0.76 4.37 -19.88 -0.09 -0.85 16 8 C -0.10 -1.56 5.83 29.10 0.17 -1.39 16 9 C 0.51 12.46 7.82 87.66 0.69 13.14 16 10 O -0.58 -19.91 16.03 -3.05 -0.05 -19.96 16 11 N -0.72 -15.89 5.47 -463.05 -2.53 -18.42 16 12 C 0.14 3.98 5.02 86.38 0.43 4.42 16 13 C -0.09 -2.81 2.96 -9.60 -0.03 -2.84 16 14 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 15 C -0.12 -4.45 6.53 31.98 0.21 -4.24 16 16 C 0.15 7.40 5.89 86.85 0.51 7.91 16 17 N -0.63 -32.38 3.40 -691.31 -2.35 -34.74 16 18 C -0.24 -13.51 10.28 84.03 0.86 -12.64 16 19 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 20 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 21 N -0.95 -56.96 10.09 21.65 0.22 -56.74 16 22 Si 0.98 45.98 29.55 68.60 2.03 48.01 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 25 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 26 C 0.14 5.37 6.77 86.68 0.59 5.95 16 27 C -0.16 -3.89 9.64 22.36 0.22 -3.68 16 28 H 0.07 0.61 7.66 -2.39 -0.02 0.59 16 29 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.65 7.66 -2.38 -0.02 0.63 16 31 H 0.15 1.86 6.30 -2.91 -0.02 1.84 16 32 H 0.15 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.14 1.29 8.09 -2.38 -0.02 1.27 16 35 H 0.12 1.54 8.08 -2.39 -0.02 1.52 16 36 H 0.42 6.86 8.47 -92.71 -0.79 6.07 16 37 H 0.05 1.52 7.93 -2.39 -0.02 1.50 16 38 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 39 H 0.06 2.18 8.05 -2.38 -0.02 2.16 16 40 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 41 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 42 H 0.07 3.94 5.86 -2.39 -0.01 3.93 16 43 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 44 H 0.02 0.74 7.68 -2.38 -0.02 0.72 16 45 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.12 2.88 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -77.47 377.19 2.46 -75.01 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.19 Total: 16.58 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 5.93 Total: -1.30 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -4.67 Total: -109.89 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -1.02 Total: -28.40 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -77.47 2.46 -75.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753138549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.860 kcal (2) G-P(sol) polarization free energy of solvation -77.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds