Wall clock time and date at job start Tue Mar 31 2020 12:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35652 * 116.99810 * 2 1 4 4 C 1.38701 * 120.15106 * 359.97438 * 3 2 1 5 5 C 1.38064 * 120.08443 * 180.02562 * 4 3 2 6 6 C 1.38548 * 120.38728 * 359.97438 * 5 4 3 7 7 C 1.37792 * 120.30323 * 359.77376 * 6 5 4 8 8 C 1.39713 * 119.90547 * 0.47672 * 7 6 5 9 9 C 1.47535 * 120.19286 * 179.78625 * 8 7 6 10 10 O 1.21581 * 119.99963 * 179.72640 * 9 8 7 11 11 N 1.34780 * 119.99627 * 359.72083 * 9 8 7 12 12 C 1.46499 * 119.99469 * 180.02562 * 11 9 8 13 13 H 1.08998 * 110.05707 * 326.41351 * 12 11 9 14 14 C 1.53874 * 110.03422 * 87.83420 * 12 11 9 15 15 C 1.54270 * 106.59709 * 119.28333 * 14 12 11 16 16 C 1.54888 * 104.19756 * 23.60720 * 15 14 12 17 17 C 1.54267 * 110.02957 * 205.00306 * 12 11 9 18 18 H 1.09007 * 110.48412 * 335.91030 * 17 12 11 19 19 C 1.52997 * 110.48986 * 98.42615 * 17 12 11 20 20 N 1.46505 * 109.47212 * 184.99890 * 19 17 12 21 21 C 1.36936 * 119.99992 * 179.97438 * 20 19 17 22 22 H 1.08006 * 119.99834 * 0.02562 * 21 20 19 23 23 C 1.38801 * 120.00093 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00145 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00180 * 0.02562 * 23 21 20 26 26 H 1.48492 * 109.47586 * 89.99558 * 25 23 21 27 27 H 1.48505 * 109.47293 * 210.00502 * 25 23 21 28 28 H 1.48505 * 109.46772 * 329.99807 * 25 23 21 29 29 H 1.08994 * 109.47174 * 300.00184 * 1 2 3 30 30 H 1.09001 * 109.46544 * 59.99752 * 1 2 3 31 31 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.96163 * 359.97438 * 4 3 2 33 33 H 1.07993 * 119.80441 * 179.97438 * 5 4 3 34 34 H 1.07995 * 119.84814 * 180.02562 * 6 5 4 35 35 H 1.07989 * 120.04808 * 180.25990 * 7 6 5 36 36 H 0.96991 * 120.00037 * 0.02562 * 11 9 8 37 37 H 1.09001 * 110.03512 * 238.56673 * 14 12 11 38 38 H 1.09000 * 110.03070 * 359.97438 * 14 12 11 39 39 H 1.08998 * 110.48535 * 142.29470 * 15 14 12 40 40 H 1.09004 * 110.48262 * 264.93002 * 15 14 12 41 41 H 1.08998 * 110.75906 * 203.74244 * 16 15 14 42 42 H 1.09004 * 110.75386 * 80.37432 * 16 15 14 43 43 H 1.09002 * 109.47153 * 64.99882 * 19 17 12 44 44 H 1.09001 * 109.46832 * 305.00073 * 19 17 12 45 45 H 0.96996 * 119.99606 * 0.02562 * 20 19 17 46 46 H 0.97010 * 119.99864 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2925 2.3739 -0.0005 5 6 1.9207 3.6033 -0.0011 6 6 3.3038 3.6836 -0.0005 7 6 4.0669 2.5363 0.0052 8 6 3.4442 1.2856 0.0005 9 6 4.2551 0.0531 0.0019 10 8 3.7095 -1.0335 0.0027 11 7 5.6006 0.1317 0.0020 12 6 6.4057 -1.0923 0.0028 13 1 5.8985 -1.8730 0.5695 14 6 6.6500 -1.5635 -1.4415 15 6 8.1776 -1.5526 -1.6562 16 6 8.7629 -1.6767 -0.2275 17 6 7.7934 -0.8115 0.6154 18 1 8.0441 0.2454 0.5236 19 6 7.8283 -1.2433 2.0828 20 7 9.1122 -0.8589 2.6745 21 6 9.3733 -1.1438 3.9882 22 1 8.6328 -1.6523 4.5880 23 6 10.5895 -0.7792 4.5490 24 7 10.8407 -1.0535 5.8116 25 14 11.8699 0.1008 3.5119 26 1 11.6658 1.5681 3.6132 27 1 13.2280 -0.2452 4.0032 28 1 11.7340 -0.3212 2.0946 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2139 2.3195 -0.0014 33 1 1.3305 4.5077 -0.0019 34 1 3.7861 4.6499 -0.0005 35 1 5.1447 2.6037 0.0099 36 1 6.0357 0.9985 0.0016 37 1 6.2613 -2.5729 -1.5757 38 1 6.1691 -0.8818 -2.1430 39 1 8.4828 -2.4010 -2.2686 40 1 8.4914 -0.6159 -2.1169 41 1 9.7746 -1.2730 -0.1881 42 1 8.7462 -2.7137 0.1080 43 1 7.7082 -2.3248 2.1462 44 1 7.0180 -0.7553 2.6244 45 1 9.7770 -0.4020 2.1359 46 1 11.6906 -0.7983 6.2036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753896427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:52 Heat of formation + Delta-G solvation = -38.293173 kcal Electronic energy + Delta-G solvation = -26586.584726 eV Core-core repulsion = 22862.578579 eV Total energy + Delta-G solvation = -3724.006148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.77785 -39.50758 -37.90258 -37.42809 -34.61070 -33.58210 -31.57799 -31.50988 -30.40294 -29.02238 -27.88414 -27.23918 -24.73994 -23.83499 -22.34115 -21.77765 -21.06670 -20.16737 -19.73377 -18.59795 -17.66105 -17.06122 -16.71365 -16.06880 -15.97631 -15.27717 -15.07569 -14.93011 -14.45675 -14.36532 -14.24788 -13.87975 -13.74725 -13.32808 -13.19365 -12.85649 -12.61203 -12.50145 -12.27058 -11.93155 -11.79971 -11.64232 -11.45712 -11.40305 -11.05757 -10.90723 -10.77624 -10.49136 -10.44053 -10.36413 -10.07572 -9.71206 -9.56220 -9.37120 -8.91571 -8.86369 -8.49303 -7.19619 -5.73836 -3.09039 0.62751 1.10137 2.84452 3.01173 3.20287 3.37880 3.40020 3.45967 3.67796 4.40529 4.43420 4.59795 4.61231 4.73360 4.76992 4.78858 4.88045 4.96230 4.99617 5.05618 5.20615 5.25430 5.36430 5.47629 5.51072 5.59325 5.63533 5.73550 5.74617 5.83631 5.85882 5.89895 5.94686 6.02437 6.11581 6.19739 6.23166 6.36968 6.38828 6.48110 6.60829 6.73531 6.85582 7.10876 7.59741 8.03270 8.34838 8.45244 9.24630 9.96706 10.17086 11.44817 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014533 B = 0.003082 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.177703 B = 9083.631839 C = 9720.132383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.279 6.279 3 C 0.183 3.817 4 C -0.222 4.222 5 C -0.055 4.055 6 C -0.167 4.167 7 C -0.046 4.046 8 C -0.170 4.170 9 C 0.559 3.441 10 O -0.520 6.520 11 N -0.719 5.719 12 C 0.149 3.851 13 H 0.096 0.904 14 C -0.131 4.131 15 C -0.124 4.124 16 C -0.113 4.113 17 C -0.107 4.107 18 H 0.078 0.922 19 C 0.165 3.835 20 N -0.754 5.754 21 C -0.241 4.241 22 H 0.089 0.911 23 C 0.003 3.997 24 N -0.936 5.936 25 Si 0.885 3.115 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.277 1.277 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.133 0.867 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.396 0.604 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.030 0.970 44 H 0.027 0.973 45 H 0.360 0.640 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.990 8.702 -18.451 27.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.190 6.190 3 C 0.135 3.865 4 C -0.241 4.241 5 C -0.073 4.073 6 C -0.186 4.186 7 C -0.065 4.065 8 C -0.174 4.174 9 C 0.346 3.654 10 O -0.396 6.396 11 N -0.372 5.372 12 C 0.044 3.956 13 H 0.114 0.886 14 C -0.170 4.170 15 C -0.162 4.162 16 C -0.151 4.151 17 C -0.126 4.126 18 H 0.096 0.904 19 C 0.038 3.962 20 N -0.400 5.400 21 C -0.371 4.371 22 H 0.107 0.893 23 C -0.193 4.193 24 N -0.584 5.584 25 Si 0.715 3.285 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.121 0.879 32 H 0.151 0.849 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.232 0.768 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.093 0.907 43 H 0.048 0.952 44 H 0.045 0.955 45 H 0.193 0.807 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -19.346 7.585 -18.205 27.627 hybrid contribution 0.952 1.363 -0.527 1.744 sum -18.394 8.948 -18.732 27.736 Atomic orbital electron populations 1.23163 0.78814 1.04356 1.01076 1.86396 1.20673 1.25370 1.86552 1.19070 0.91023 0.84923 0.91476 1.21247 1.00320 0.92096 1.10458 1.21121 0.94764 0.97058 0.94400 1.21005 0.93835 0.98573 1.05159 1.21223 1.00059 0.90839 0.94387 1.19431 0.90889 0.94252 1.12816 1.17958 0.82081 0.88571 0.76787 1.90812 1.71585 1.28609 1.48628 1.46068 1.05691 1.09765 1.75635 1.21653 0.90960 0.86900 0.96039 0.88628 1.22547 0.96370 1.01767 0.96299 1.22382 0.94893 1.01419 0.97526 1.22490 0.98545 1.00632 0.93463 1.22488 0.93153 1.00386 0.96565 0.90406 1.20667 0.88980 0.97501 0.89072 1.42677 1.14890 1.71894 1.10507 1.19078 1.00793 1.31791 0.85478 0.89272 1.24671 0.97606 1.01148 0.95861 1.69711 1.24435 1.52527 1.11707 0.86537 0.82035 0.79912 0.79985 1.21178 1.21787 1.20292 0.92580 0.92708 0.87940 0.84874 0.85370 0.85192 0.84874 0.76843 0.91221 0.91682 0.91745 0.91928 0.91212 0.90699 0.95248 0.95528 0.80725 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.15 16 2 O -0.28 -3.63 8.57 -40.54 -0.35 -3.98 16 3 C 0.18 2.22 6.70 -38.70 -0.26 1.96 16 4 C -0.22 -1.99 9.03 -39.47 -0.36 -2.34 16 5 C -0.06 -0.42 10.03 -39.53 -0.40 -0.82 16 6 C -0.17 -1.36 10.02 -39.63 -0.40 -1.75 16 7 C -0.05 -0.45 9.54 -39.19 -0.37 -0.82 16 8 C -0.17 -2.14 5.89 -104.84 -0.62 -2.75 16 9 C 0.56 8.30 7.76 -12.47 -0.10 8.20 16 10 O -0.52 -9.54 14.82 -16.58 -0.25 -9.79 16 11 N -0.72 -9.26 4.93 -53.76 -0.27 -9.53 16 12 C 0.15 2.08 2.82 -66.81 -0.19 1.89 16 13 H 0.10 1.54 7.26 -51.93 -0.38 1.17 16 14 C -0.13 -1.61 6.59 -25.61 -0.17 -1.78 16 15 C -0.12 -1.43 6.83 -25.07 -0.17 -1.60 16 16 C -0.11 -1.59 6.19 -24.74 -0.15 -1.75 16 17 C -0.11 -1.60 2.59 -88.96 -0.23 -1.83 16 18 H 0.08 1.11 7.74 -51.93 -0.40 0.71 16 19 C 0.16 3.25 5.54 -4.04 -0.02 3.23 16 20 N -0.75 -17.98 5.30 -59.91 -0.32 -18.30 16 21 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 22 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 23 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 24 N -0.94 -29.78 13.97 55.49 0.78 -29.01 16 25 Si 0.88 22.13 27.74 -169.99 -4.71 17.42 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 29 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 30 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 33 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.13 1.01 6.40 -52.49 -0.34 0.67 16 36 H 0.40 4.14 6.39 -40.82 -0.26 3.88 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.78 7.92 -51.93 -0.41 0.37 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.11 7.97 -51.93 -0.41 0.69 16 43 H 0.03 0.60 8.02 -51.93 -0.42 0.19 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.36 8.27 5.50 -40.82 -0.22 8.04 16 46 H 0.26 7.82 8.31 -40.82 -0.34 7.49 16 LS Contribution 371.50 15.07 5.60 5.60 Total: -1.00 -35.87 371.50 -9.15 -45.02 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.94 Total: 8.69 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -2.69 Total: -6.13 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: 0.19 Total: -56.83 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.59 Total: -13.76 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.42 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.87 -9.15 -45.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753896427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.729 kcal (2) G-P(sol) polarization free energy of solvation -35.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds