Wall clock time and date at job start Tue Mar 31 2020 12:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35652 * 116.99810 * 2 1 4 4 C 1.38701 * 120.15106 * 359.97438 * 3 2 1 5 5 C 1.38064 * 120.08443 * 180.02562 * 4 3 2 6 6 C 1.38548 * 120.38728 * 359.97438 * 5 4 3 7 7 C 1.37792 * 120.30323 * 359.77376 * 6 5 4 8 8 C 1.39713 * 119.90547 * 0.47672 * 7 6 5 9 9 C 1.47535 * 120.19286 * 179.78625 * 8 7 6 10 10 O 1.21581 * 119.99963 * 179.72640 * 9 8 7 11 11 N 1.34780 * 119.99627 * 359.72083 * 9 8 7 12 12 C 1.46499 * 119.99469 * 180.02562 * 11 9 8 13 13 H 1.08998 * 110.05707 * 326.41351 * 12 11 9 14 14 C 1.53874 * 110.03422 * 87.83420 * 12 11 9 15 15 C 1.54270 * 106.59709 * 119.28333 * 14 12 11 16 16 C 1.54888 * 104.19756 * 23.60720 * 15 14 12 17 17 C 1.54267 * 110.02957 * 205.00306 * 12 11 9 18 18 H 1.09007 * 110.48412 * 335.91030 * 17 12 11 19 19 C 1.52997 * 110.48986 * 98.42615 * 17 12 11 20 20 N 1.46505 * 109.47212 * 184.99890 * 19 17 12 21 21 C 1.36936 * 119.99992 * 179.97438 * 20 19 17 22 22 H 1.08006 * 119.99834 * 0.02562 * 21 20 19 23 23 C 1.38801 * 120.00093 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00145 * 180.02562 * 23 21 20 25 25 Si 1.86803 * 120.00180 * 0.02562 * 23 21 20 26 26 H 1.48492 * 109.47586 * 89.99558 * 25 23 21 27 27 H 1.48505 * 109.47293 * 210.00502 * 25 23 21 28 28 H 1.48505 * 109.46772 * 329.99807 * 25 23 21 29 29 H 1.08994 * 109.47174 * 300.00184 * 1 2 3 30 30 H 1.09001 * 109.46544 * 59.99752 * 1 2 3 31 31 H 1.09000 * 109.46966 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.96163 * 359.97438 * 4 3 2 33 33 H 1.07993 * 119.80441 * 179.97438 * 5 4 3 34 34 H 1.07995 * 119.84814 * 180.02562 * 6 5 4 35 35 H 1.07989 * 120.04808 * 180.25990 * 7 6 5 36 36 H 0.96991 * 120.00037 * 0.02562 * 11 9 8 37 37 H 1.09001 * 110.03512 * 238.56673 * 14 12 11 38 38 H 1.09000 * 110.03070 * 359.97438 * 14 12 11 39 39 H 1.08998 * 110.48535 * 142.29470 * 15 14 12 40 40 H 1.09004 * 110.48262 * 264.93002 * 15 14 12 41 41 H 1.08998 * 110.75906 * 203.74244 * 16 15 14 42 42 H 1.09004 * 110.75386 * 80.37432 * 16 15 14 43 43 H 1.09002 * 109.47153 * 64.99882 * 19 17 12 44 44 H 1.09001 * 109.46832 * 305.00073 * 19 17 12 45 45 H 0.96996 * 119.99606 * 0.02562 * 20 19 17 46 46 H 0.97010 * 119.99864 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2925 2.3739 -0.0005 5 6 1.9207 3.6033 -0.0011 6 6 3.3038 3.6836 -0.0005 7 6 4.0669 2.5363 0.0052 8 6 3.4442 1.2856 0.0005 9 6 4.2551 0.0531 0.0019 10 8 3.7095 -1.0335 0.0027 11 7 5.6006 0.1317 0.0020 12 6 6.4057 -1.0923 0.0028 13 1 5.8985 -1.8730 0.5695 14 6 6.6500 -1.5635 -1.4415 15 6 8.1776 -1.5526 -1.6562 16 6 8.7629 -1.6767 -0.2275 17 6 7.7934 -0.8115 0.6154 18 1 8.0441 0.2454 0.5236 19 6 7.8283 -1.2433 2.0828 20 7 9.1122 -0.8589 2.6745 21 6 9.3733 -1.1438 3.9882 22 1 8.6328 -1.6523 4.5880 23 6 10.5895 -0.7792 4.5490 24 7 10.8407 -1.0535 5.8116 25 14 11.8699 0.1008 3.5119 26 1 11.6658 1.5681 3.6132 27 1 13.2280 -0.2452 4.0032 28 1 11.7340 -0.3212 2.0946 29 1 -0.3633 0.5138 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2139 2.3195 -0.0014 33 1 1.3305 4.5077 -0.0019 34 1 3.7861 4.6499 -0.0005 35 1 5.1447 2.6037 0.0099 36 1 6.0357 0.9985 0.0016 37 1 6.2613 -2.5729 -1.5757 38 1 6.1691 -0.8818 -2.1430 39 1 8.4828 -2.4010 -2.2686 40 1 8.4914 -0.6159 -2.1169 41 1 9.7746 -1.2730 -0.1881 42 1 8.7462 -2.7137 0.1080 43 1 7.7082 -2.3248 2.1462 44 1 7.0180 -0.7553 2.6244 45 1 9.7770 -0.4020 2.1359 46 1 11.6906 -0.7983 6.2036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753896427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:51 Heat of formation + Delta-G solvation = -61.946902 kcal Electronic energy + Delta-G solvation = -26587.610429 eV Core-core repulsion = 22862.578579 eV Total energy + Delta-G solvation = -3725.031850 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.65444 -40.52214 -39.01851 -38.23744 -36.46403 -34.74007 -33.57298 -32.33068 -31.08912 -30.61510 -28.79897 -28.01675 -26.36376 -24.84329 -23.64506 -22.99463 -22.07073 -21.38801 -20.82486 -19.85446 -19.21503 -18.05372 -17.75409 -16.96591 -16.76970 -16.46941 -16.30368 -16.08260 -15.67862 -15.61572 -15.28379 -15.18420 -14.94597 -14.55945 -14.46832 -14.26786 -13.81034 -13.52511 -13.46498 -13.09944 -12.93576 -12.77416 -12.58616 -12.36468 -12.15082 -12.11739 -12.04510 -11.97405 -11.83935 -11.68577 -11.63175 -11.43409 -10.98238 -10.82575 -10.18378 -9.94135 -9.31910 -9.23484 -8.03186 -5.37994 -0.13169 0.41132 1.38141 1.43533 1.51109 1.91344 2.17160 2.35177 2.49173 2.86231 3.26973 3.33836 3.63945 3.69589 3.80572 3.88379 3.91204 4.01810 4.22424 4.35231 4.35452 4.35684 4.40845 4.46072 4.51408 4.53599 4.58031 4.59697 4.69458 4.73095 4.84882 4.96719 4.99938 5.09163 5.16214 5.18894 5.23496 5.28838 5.32476 5.46884 5.47768 5.62376 5.73657 5.76404 6.20077 6.39082 6.60115 7.06954 7.28735 7.80693 8.04316 9.18698 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.014533 B = 0.003082 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.177703 B = 9083.631839 C = 9720.132383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.318 6.318 3 C 0.159 3.841 4 C -0.223 4.223 5 C -0.047 4.047 6 C -0.167 4.167 7 C -0.049 4.049 8 C -0.204 4.204 9 C 0.554 3.446 10 O -0.568 6.568 11 N -0.710 5.710 12 C 0.153 3.847 13 H 0.064 0.936 14 C -0.124 4.124 15 C -0.110 4.110 16 C -0.115 4.115 17 C -0.094 4.094 18 H 0.096 0.904 19 C 0.165 3.835 20 N -0.750 5.750 21 C -0.241 4.241 22 H 0.047 0.953 23 C -0.066 4.066 24 N -0.986 5.986 25 Si 0.962 3.038 26 H -0.274 1.274 27 H -0.296 1.296 28 H -0.244 1.244 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.156 0.844 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.410 0.590 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.012 0.988 45 H 0.370 0.630 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.741 11.842 -21.351 30.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.230 6.230 3 C 0.111 3.889 4 C -0.242 4.242 5 C -0.065 4.065 6 C -0.185 4.185 7 C -0.068 4.068 8 C -0.208 4.208 9 C 0.343 3.657 10 O -0.448 6.448 11 N -0.362 5.362 12 C 0.048 3.952 13 H 0.083 0.917 14 C -0.163 4.163 15 C -0.147 4.147 16 C -0.153 4.153 17 C -0.113 4.113 18 H 0.114 0.886 19 C 0.039 3.961 20 N -0.396 5.396 21 C -0.372 4.372 22 H 0.065 0.935 23 C -0.257 4.257 24 N -0.637 5.637 25 Si 0.788 3.212 26 H -0.200 1.200 27 H -0.223 1.223 28 H -0.169 1.169 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.174 0.826 33 H 0.181 0.819 34 H 0.177 0.823 35 H 0.168 0.832 36 H 0.248 0.752 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.034 0.966 44 H 0.030 0.970 45 H 0.204 0.796 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.114 10.751 -21.150 30.468 hybrid contribution 0.715 0.375 0.476 0.937 sum -18.399 11.126 -20.675 29.829 Atomic orbital electron populations 1.23403 0.76778 1.05283 1.02608 1.86336 1.23079 1.26679 1.86935 1.19437 0.91323 0.85670 0.92500 1.21550 1.01429 0.91502 1.09717 1.21606 0.95076 0.97753 0.92080 1.21412 0.94183 0.99124 1.03735 1.21467 1.01149 0.90240 0.93897 1.19479 0.91279 0.94165 1.15839 1.18452 0.82512 0.88988 0.75769 1.90773 1.72462 1.30500 1.51063 1.45957 1.05265 1.10037 1.74978 1.21482 0.90063 0.86749 0.96941 0.91728 1.22473 0.97475 1.01554 0.94777 1.22317 0.93332 1.03185 0.95910 1.22490 0.98349 0.99508 0.94959 1.22350 0.94306 1.01543 0.93141 0.88582 1.20735 0.86725 0.96561 0.92121 1.42566 1.16419 1.71815 1.08818 1.19009 0.99993 1.30868 0.87286 0.93492 1.25606 1.00251 1.02529 0.97300 1.69916 1.25236 1.54354 1.14166 0.85314 0.77763 0.78648 0.79498 1.19993 1.22293 1.16858 0.91256 0.90800 0.87501 0.82613 0.81890 0.82301 0.83226 0.75245 0.91776 0.90902 0.90241 0.89905 0.90984 0.92039 0.96568 0.97044 0.79649 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.32 16 2 O -0.32 -8.62 8.57 -68.76 -0.59 -9.21 16 3 C 0.16 3.84 6.70 22.84 0.15 3.99 16 4 C -0.22 -3.55 9.03 22.34 0.20 -3.35 16 5 C -0.05 -0.56 10.03 22.30 0.22 -0.34 16 6 C -0.17 -2.15 10.02 22.24 0.22 -1.92 16 7 C -0.05 -0.86 9.54 22.52 0.21 -0.64 16 8 C -0.20 -5.13 5.89 -20.01 -0.12 -5.25 16 9 C 0.55 17.02 7.76 86.69 0.67 17.69 16 10 O -0.57 -22.21 14.82 16.95 0.25 -21.95 16 11 N -0.71 -18.16 4.93 -442.27 -2.18 -20.34 16 12 C 0.15 4.28 2.82 45.72 0.13 4.41 16 13 H 0.06 2.22 7.26 -2.39 -0.02 2.21 16 14 C -0.12 -2.89 6.59 31.32 0.21 -2.68 16 15 C -0.11 -2.19 6.83 31.67 0.22 -1.97 16 16 C -0.12 -3.01 6.19 31.89 0.20 -2.81 16 17 C -0.09 -2.73 2.59 -9.72 -0.03 -2.75 16 18 H 0.10 2.48 7.74 -2.38 -0.02 2.46 16 19 C 0.16 6.64 5.54 86.38 0.48 7.12 16 20 N -0.75 -35.59 5.30 -343.45 -1.82 -37.41 16 21 C -0.24 -14.22 10.47 84.03 0.88 -13.34 16 22 H 0.05 3.10 8.06 -2.91 -0.02 3.08 16 23 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 24 N -0.99 -64.47 13.97 21.65 0.30 -64.17 16 25 Si 0.96 45.04 27.74 68.60 1.90 46.94 16 26 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 27 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 28 H -0.24 -10.05 6.52 99.48 0.65 -9.40 16 29 H 0.07 0.83 7.66 -2.39 -0.02 0.81 16 30 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 31 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.16 1.62 6.30 -2.91 -0.02 1.60 16 33 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 34 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 35 H 0.15 1.92 6.40 -2.92 -0.02 1.90 16 36 H 0.41 7.99 6.39 -92.72 -0.59 7.39 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 1.61 7.92 -2.39 -0.02 1.59 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.06 1.77 7.97 -2.38 -0.02 1.75 16 43 H 0.02 0.70 8.02 -2.39 -0.02 0.68 16 44 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.37 16.12 5.50 -92.71 -0.51 15.61 16 46 H 0.26 15.99 8.31 -92.70 -0.77 15.22 16 Total: -1.00 -82.50 371.50 2.94 -79.56 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.16 Total: 30.57 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 5.23 Total: -3.99 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -3.70 Total: -121.91 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -0.34 Total: -31.17 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.90 Total: 46.94 kcal Total: -82.50 2.94 -79.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753896427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.615 kcal (2) G-P(sol) polarization free energy of solvation -82.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds