Wall clock time and date at job start Tue Mar 31 2020 12:20:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.35658 * 117.00057 * 2 1
4 4 C 1.38714 * 120.14871 * 0.22836 * 3 2 1
5 5 C 1.38055 * 120.08456 * 180.27276 * 4 3 2
6 6 C 1.38553 * 120.38517 * 359.75370 * 5 4 3
7 7 C 1.37786 * 120.30566 * 359.97438 * 6 5 4
8 8 C 1.39704 * 119.90523 * 0.02562 * 7 6 5
9 9 C 1.47534 * 120.19247 * 179.97438 * 8 7 6
10 10 O 1.21588 * 120.00365 * 180.02562 * 9 8 7
11 11 N 1.34779 * 120.00029 * 359.97438 * 9 8 7
12 12 C 1.46501 * 120.00250 * 180.02562 * 11 9 8
13 13 H 1.08995 * 110.05105 * 33.58346 * 12 11 9
14 14 C 1.53870 * 110.03284 * 272.16783 * 12 11 9
15 15 C 1.54269 * 106.59902 * 240.71746 * 14 12 11
16 16 C 1.55031 * 104.28113 * 23.51530 * 15 14 12
17 17 C 1.54267 * 110.03171 * 155.00020 * 12 11 9
18 18 H 1.08999 * 110.48845 * 214.48496 * 17 12 11
19 19 C 1.53004 * 110.48676 * 336.99945 * 17 12 11
20 20 N 1.46504 * 109.46932 * 183.16084 * 19 17 12
21 21 C 1.36934 * 119.99567 * 179.97438 * 20 19 17
22 22 H 1.08001 * 120.00537 * 359.97438 * 21 20 19
23 23 C 1.38811 * 119.99798 * 179.97438 * 21 20 19
24 24 N 1.31624 * 120.00134 * 359.97438 * 23 21 20
25 25 Si 1.86803 * 120.00229 * 179.97438 * 23 21 20
26 26 H 1.48500 * 109.46986 * 270.00112 * 25 23 21
27 27 H 1.48496 * 109.47029 * 30.00128 * 25 23 21
28 28 H 1.48499 * 109.47352 * 149.99958 * 25 23 21
29 29 H 1.09006 * 109.46983 * 59.99821 * 1 2 3
30 30 H 1.09000 * 109.47083 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47012 * 300.00122 * 1 2 3
32 32 H 1.07994 * 119.95796 * 0.02562 * 4 3 2
33 33 H 1.07994 * 119.80688 * 179.71733 * 5 4 3
34 34 H 1.08009 * 119.84486 * 179.97438 * 6 5 4
35 35 H 1.07994 * 120.04336 * 180.02562 * 7 6 5
36 36 H 0.97006 * 119.99393 * 0.02562 * 11 9 8
37 37 H 1.09003 * 110.03137 * 0.02562 * 14 12 11
38 38 H 1.09001 * 110.03262 * 121.38296 * 14 12 11
39 39 H 1.09003 * 110.48493 * 142.29131 * 15 14 12
40 40 H 1.08998 * 110.48349 * 264.93048 * 15 14 12
41 41 H 1.08997 * 110.87628 * 203.90258 * 16 15 14
42 42 H 1.09007 * 110.69387 * 80.48813 * 16 15 14
43 43 H 1.08998 * 109.47524 * 63.15728 * 19 17 12
44 44 H 1.08997 * 109.47093 * 303.15629 * 19 17 12
45 45 H 0.97000 * 119.99825 * 359.97438 * 20 19 17
46 46 H 0.97005 * 119.99717 * 0.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2087 0.0000
4 6 1.2924 2.3740 0.0048
5 6 1.9205 3.6034 -0.0009
6 6 3.3037 3.6837 -0.0063
7 6 4.0668 2.5364 -0.0055
8 6 3.4441 1.2858 0.0003
9 6 4.2550 0.0533 0.0006
10 8 3.7095 -1.0334 0.0051
11 7 5.6005 0.1318 -0.0051
12 6 6.4057 -1.0921 -0.0054
13 1 5.8962 -1.8746 -0.5677
14 6 6.6557 -1.5589 1.4394
15 6 8.1841 -1.5472 1.6480
16 6 8.7063 -0.5370 0.5943
17 6 7.7909 -0.8131 -0.6243
18 1 8.1441 -1.6836 -1.1771
19 6 7.7321 0.4124 -1.5383
20 7 9.0378 0.6122 -2.1720
21 6 9.2257 1.6556 -3.0386
22 1 8.4114 2.3311 -3.2553
23 6 10.4631 1.8453 -3.6385
24 7 11.4558 1.0224 -3.3741
25 14 10.7194 3.2683 -4.8213
26 1 10.3948 2.8288 -6.2022
27 1 9.8316 4.3956 -4.4391
28 1 12.1354 3.7116 -4.7629
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 0.2139 2.3195 0.0089
33 1 1.3303 4.5078 -0.0018
34 1 3.7860 4.6501 -0.0111
35 1 5.1446 2.6039 -0.0092
36 1 6.0356 0.9987 -0.0091
37 1 6.1775 -0.8750 2.1407
38 1 6.2668 -2.5676 1.5785
39 1 8.4291 -1.2099 2.6552
40 1 8.6018 -2.5371 1.4641
41 1 9.7489 -0.7372 0.3475
42 1 8.5814 0.4868 0.9472
43 1 7.4754 1.2930 -0.9494
44 1 6.9753 0.2563 -2.3071
45 1 9.7691 0.0053 -1.9776
46 1 11.3226 0.2833 -2.7602
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001753896428.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:20:54
Heat of formation + Delta-G solvation = -37.452095 kcal
Electronic energy + Delta-G solvation = -26945.997563 eV
Core-core repulsion = 23222.027888 eV
Total energy + Delta-G solvation = -3723.969676 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-40.73866 -39.55550 -37.82986 -37.35818 -34.66882 -33.48193 -31.49199 -31.43381
-30.32391 -28.38675 -27.86335 -27.21082 -24.34327 -23.86571 -22.56760 -22.22294
-20.84706 -20.32138 -19.24098 -18.59837 -17.51986 -17.08509 -16.46432 -15.98238
-15.77299 -15.36697 -14.98849 -14.88816 -14.70496 -14.36363 -14.08992 -13.74970
-13.68902 -13.46456 -13.34977 -13.00062 -12.76721 -12.44371 -12.29360 -11.83868
-11.53484 -11.39250 -11.34726 -11.11124 -10.91991 -10.77243 -10.53610 -10.51892
-10.39075 -10.29160 -10.00774 -9.66297 -9.29267 -9.16835 -8.87259 -8.84843
-8.42153 -6.99800 -6.10184 -3.09657 0.70697 1.18217 2.91612 3.06065
3.29165 3.51542 3.56500 3.70251 3.75305 4.47227 4.51134 4.61179
4.72978 4.80591 4.82305 4.83959 4.90702 5.03419 5.05366 5.13957
5.25381 5.31860 5.43679 5.52781 5.56357 5.65115 5.69872 5.76391
5.83223 5.89694 5.92149 6.01538 6.03607 6.07464 6.11881 6.21375
6.27986 6.45278 6.45747 6.46293 6.67972 6.72384 6.78420 7.16542
7.69080 7.81051 8.41619 8.76484 9.23600 10.09961 10.25206 11.38582
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.011896 B = 0.003638 C = 0.002993
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2353.152041 B = 7694.585019 C = 9353.720328
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.021 3.979
2 O -0.280 6.280
3 C 0.182 3.818
4 C -0.223 4.223
5 C -0.055 4.055
6 C -0.166 4.166
7 C -0.045 4.045
8 C -0.170 4.170
9 C 0.559 3.441
10 O -0.526 6.526
11 N -0.717 5.717
12 C 0.151 3.849
13 H 0.089 0.911
14 C -0.131 4.131
15 C -0.125 4.125
16 C -0.113 4.113
17 C -0.109 4.109
18 H 0.086 0.914
19 C 0.171 3.829
20 N -0.741 5.741
21 C -0.331 4.331
22 H 0.064 0.936
23 C -0.045 4.045
24 N -0.944 5.944
25 Si 1.082 2.918
26 H -0.296 1.296
27 H -0.295 1.295
28 H -0.288 1.288
29 H 0.055 0.945
30 H 0.101 0.899
31 H 0.054 0.946
32 H 0.133 0.867
33 H 0.128 0.872
34 H 0.131 0.869
35 H 0.134 0.866
36 H 0.401 0.599
37 H 0.066 0.934
38 H 0.067 0.933
39 H 0.063 0.937
40 H 0.065 0.935
41 H 0.070 0.930
42 H 0.067 0.933
43 H 0.014 0.986
44 H 0.021 0.979
45 H 0.367 0.633
46 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.230 1.344 11.627 23.372
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 O -0.191 6.191
3 C 0.134 3.866
4 C -0.242 4.242
5 C -0.073 4.073
6 C -0.184 4.184
7 C -0.064 4.064
8 C -0.174 4.174
9 C 0.346 3.654
10 O -0.403 6.403
11 N -0.371 5.371
12 C 0.046 3.954
13 H 0.107 0.893
14 C -0.170 4.170
15 C -0.163 4.163
16 C -0.150 4.150
17 C -0.129 4.129
18 H 0.104 0.896
19 C 0.043 3.957
20 N -0.386 5.386
21 C -0.462 4.462
22 H 0.082 0.918
23 C -0.243 4.243
24 N -0.590 5.590
25 Si 0.913 3.087
26 H -0.223 1.223
27 H -0.222 1.222
28 H -0.214 1.214
29 H 0.074 0.926
30 H 0.120 0.880
31 H 0.073 0.927
32 H 0.151 0.849
33 H 0.146 0.854
34 H 0.149 0.851
35 H 0.152 0.848
36 H 0.239 0.761
37 H 0.085 0.915
38 H 0.086 0.914
39 H 0.081 0.919
40 H 0.083 0.917
41 H 0.089 0.911
42 H 0.086 0.914
43 H 0.032 0.968
44 H 0.039 0.961
45 H 0.201 0.799
46 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -19.619 1.259 10.589 22.330
hybrid contribution -1.033 -0.256 0.977 1.445
sum -20.652 1.003 11.566 23.691
Atomic orbital electron populations
1.23148 0.78946 1.04228 1.01066 1.86387 1.20562 1.25443 1.86681
1.19054 0.90982 0.84864 0.91717 1.21227 1.00229 0.92104 1.10649
1.21120 0.94749 0.97037 0.94444 1.21031 0.93794 0.98676 1.04878
1.21272 1.00233 0.90857 0.93993 1.19417 0.90844 0.94254 1.12846
1.17974 0.82137 0.88545 0.76730 1.90790 1.71724 1.28614 1.49161
1.46179 1.05532 1.10283 1.75138 1.21561 0.91049 0.86776 0.96021
0.89275 1.22571 0.96428 1.01548 0.96403 1.22407 0.94945 0.99763
0.99135 1.22527 0.99426 0.98973 0.94087 1.22500 0.93385 1.00344
0.96633 0.89585 1.20502 0.89401 0.92850 0.92960 1.42352 1.08260
1.34384 1.53639 1.20049 0.98825 1.06124 1.21248 0.91811 1.25759
0.91855 1.04272 1.02377 1.70852 1.32633 1.17425 1.38087 0.83204
0.75575 0.74482 0.75425 1.22336 1.22169 1.21395 0.92649 0.88044
0.92715 0.84932 0.85364 0.85079 0.84792 0.76066 0.91518 0.91423
0.91872 0.91666 0.91090 0.91448 0.96804 0.96095 0.79949 0.93362
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.17 9.81 101.05 0.99 1.17 16
2 O -0.28 -3.80 8.57 -40.55 -0.35 -4.15 16
3 C 0.18 2.36 6.70 -38.69 -0.26 2.11 16
4 C -0.22 -2.19 9.03 -39.47 -0.36 -2.55 16
5 C -0.06 -0.49 10.03 -39.53 -0.40 -0.88 16
6 C -0.17 -1.61 10.02 -39.63 -0.40 -2.01 16
7 C -0.04 -0.52 9.53 -39.20 -0.37 -0.89 16
8 C -0.17 -2.36 5.89 -104.85 -0.62 -2.97 16
9 C 0.56 8.94 7.76 -12.47 -0.10 8.85 16
10 O -0.53 -9.96 14.82 -16.59 -0.25 -10.21 16
11 N -0.72 -10.46 4.29 -53.76 -0.23 -10.70 16
12 C 0.15 2.24 3.12 -66.81 -0.21 2.03 16
13 H 0.09 1.44 7.56 -51.93 -0.39 1.05 16
14 C -0.13 -1.71 6.59 -25.61 -0.17 -1.88 16
15 C -0.12 -1.54 6.83 -24.99 -0.17 -1.72 16
16 C -0.11 -1.67 6.11 -24.66 -0.15 -1.82 16
17 C -0.11 -1.77 2.86 -88.96 -0.25 -2.02 16
18 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16
19 C 0.17 3.39 4.80 -4.04 -0.02 3.37 16
20 N -0.74 -18.46 5.46 -59.91 -0.33 -18.78 16
21 C -0.33 -9.33 9.99 -15.06 -0.15 -9.48 16
22 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16
23 C -0.05 -1.31 5.50 -17.43 -0.10 -1.41 16
24 N -0.94 -29.16 13.70 55.49 0.76 -28.40 16
25 Si 1.08 25.96 29.92 -169.99 -5.09 20.87 16
26 H -0.30 -6.94 7.11 56.52 0.40 -6.53 16
27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
29 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16
30 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16
31 H 0.05 0.35 7.65 -51.93 -0.40 -0.05 16
32 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16
33 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16
34 H 0.13 1.00 8.06 -52.48 -0.42 0.58 16
35 H 0.13 1.41 6.40 -52.49 -0.34 1.07 16
36 H 0.40 5.45 4.55 -40.82 -0.19 5.26 16
37 H 0.07 0.88 7.92 -51.93 -0.41 0.46 16
38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
42 H 0.07 1.02 8.00 -51.92 -0.42 0.61 16
43 H 0.01 0.27 6.34 -51.93 -0.33 -0.06 16
44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16
45 H 0.37 9.35 6.41 -40.82 -0.26 9.09 16
46 H 0.26 7.74 6.77 -40.82 -0.28 7.46 16
LS Contribution 369.17 15.07 5.56 5.56
Total: -1.00 -34.99 369.17 -9.38 -44.38
By element:
Atomic # 1 Polarization: 18.27 SS G_CDS: -6.75 Total: 11.53 kcal
Atomic # 6 Polarization: -7.38 SS G_CDS: -2.72 Total: -10.11 kcal
Atomic # 7 Polarization: -58.08 SS G_CDS: 0.20 Total: -57.88 kcal
Atomic # 8 Polarization: -13.76 SS G_CDS: -0.59 Total: -14.36 kcal
Atomic # 14 Polarization: 25.96 SS G_CDS: -5.09 Total: 20.87 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -34.99 -9.38 -44.38 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753896428.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.924 kcal
(2) G-P(sol) polarization free energy of solvation -34.992 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.068 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.376 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.452 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds