Wall clock time and date at job start Tue Mar 31 2020 12:20:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42897 * 1
3 3 C 1.35658 * 117.00057 * 2 1
4 4 C 1.38714 * 120.14871 * 0.22836 * 3 2 1
5 5 C 1.38055 * 120.08456 * 180.27276 * 4 3 2
6 6 C 1.38553 * 120.38517 * 359.75370 * 5 4 3
7 7 C 1.37786 * 120.30566 * 359.97438 * 6 5 4
8 8 C 1.39704 * 119.90523 * 0.02562 * 7 6 5
9 9 C 1.47534 * 120.19247 * 179.97438 * 8 7 6
10 10 O 1.21588 * 120.00365 * 180.02562 * 9 8 7
11 11 N 1.34779 * 120.00029 * 359.97438 * 9 8 7
12 12 C 1.46501 * 120.00250 * 180.02562 * 11 9 8
13 13 H 1.08995 * 110.05105 * 33.58346 * 12 11 9
14 14 C 1.53870 * 110.03284 * 272.16783 * 12 11 9
15 15 C 1.54269 * 106.59902 * 240.71746 * 14 12 11
16 16 C 1.55031 * 104.28113 * 23.51530 * 15 14 12
17 17 C 1.54267 * 110.03171 * 155.00020 * 12 11 9
18 18 H 1.08999 * 110.48845 * 214.48496 * 17 12 11
19 19 C 1.53004 * 110.48676 * 336.99945 * 17 12 11
20 20 N 1.46504 * 109.46932 * 183.16084 * 19 17 12
21 21 C 1.36934 * 119.99567 * 179.97438 * 20 19 17
22 22 H 1.08001 * 120.00537 * 359.97438 * 21 20 19
23 23 C 1.38811 * 119.99798 * 179.97438 * 21 20 19
24 24 N 1.31624 * 120.00134 * 359.97438 * 23 21 20
25 25 Si 1.86803 * 120.00229 * 179.97438 * 23 21 20
26 26 H 1.48500 * 109.46986 * 270.00112 * 25 23 21
27 27 H 1.48496 * 109.47029 * 30.00128 * 25 23 21
28 28 H 1.48499 * 109.47352 * 149.99958 * 25 23 21
29 29 H 1.09006 * 109.46983 * 59.99821 * 1 2 3
30 30 H 1.09000 * 109.47083 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47012 * 300.00122 * 1 2 3
32 32 H 1.07994 * 119.95796 * 0.02562 * 4 3 2
33 33 H 1.07994 * 119.80688 * 179.71733 * 5 4 3
34 34 H 1.08009 * 119.84486 * 179.97438 * 6 5 4
35 35 H 1.07994 * 120.04336 * 180.02562 * 7 6 5
36 36 H 0.97006 * 119.99393 * 0.02562 * 11 9 8
37 37 H 1.09003 * 110.03137 * 0.02562 * 14 12 11
38 38 H 1.09001 * 110.03262 * 121.38296 * 14 12 11
39 39 H 1.09003 * 110.48493 * 142.29131 * 15 14 12
40 40 H 1.08998 * 110.48349 * 264.93048 * 15 14 12
41 41 H 1.08997 * 110.87628 * 203.90258 * 16 15 14
42 42 H 1.09007 * 110.69387 * 80.48813 * 16 15 14
43 43 H 1.08998 * 109.47524 * 63.15728 * 19 17 12
44 44 H 1.08997 * 109.47093 * 303.15629 * 19 17 12
45 45 H 0.97000 * 119.99825 * 359.97438 * 20 19 17
46 46 H 0.97005 * 119.99717 * 0.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2087 0.0000
4 6 1.2924 2.3740 0.0048
5 6 1.9205 3.6034 -0.0009
6 6 3.3037 3.6837 -0.0063
7 6 4.0668 2.5364 -0.0055
8 6 3.4441 1.2858 0.0003
9 6 4.2550 0.0533 0.0006
10 8 3.7095 -1.0334 0.0051
11 7 5.6005 0.1318 -0.0051
12 6 6.4057 -1.0921 -0.0054
13 1 5.8962 -1.8746 -0.5677
14 6 6.6557 -1.5589 1.4394
15 6 8.1841 -1.5472 1.6480
16 6 8.7063 -0.5370 0.5943
17 6 7.7909 -0.8131 -0.6243
18 1 8.1441 -1.6836 -1.1771
19 6 7.7321 0.4124 -1.5383
20 7 9.0378 0.6122 -2.1720
21 6 9.2257 1.6556 -3.0386
22 1 8.4114 2.3311 -3.2553
23 6 10.4631 1.8453 -3.6385
24 7 11.4558 1.0224 -3.3741
25 14 10.7194 3.2683 -4.8213
26 1 10.3948 2.8288 -6.2022
27 1 9.8316 4.3956 -4.4391
28 1 12.1354 3.7116 -4.7629
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 0.2139 2.3195 0.0089
33 1 1.3303 4.5078 -0.0018
34 1 3.7860 4.6501 -0.0111
35 1 5.1446 2.6039 -0.0092
36 1 6.0356 0.9987 -0.0091
37 1 6.1775 -0.8750 2.1407
38 1 6.2668 -2.5676 1.5785
39 1 8.4291 -1.2099 2.6552
40 1 8.6018 -2.5371 1.4641
41 1 9.7489 -0.7372 0.3475
42 1 8.5814 0.4868 0.9472
43 1 7.4754 1.2930 -0.9494
44 1 6.9753 0.2563 -2.3071
45 1 9.7691 0.0053 -1.9776
46 1 11.3226 0.2833 -2.7602
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001753896428.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:20:53
Heat of formation + Delta-G solvation = -58.880116 kcal
Electronic energy + Delta-G solvation = -26946.926752 eV
Core-core repulsion = 23222.027888 eV
Total energy + Delta-G solvation = -3724.898864 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 318.173 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.73649 -40.64792 -39.02102 -38.26632 -36.59619 -34.68191 -33.33690 -32.35063
-31.11565 -30.03978 -28.87870 -28.03286 -26.12313 -24.91732 -24.36106 -23.04696
-21.92266 -21.48680 -20.57058 -19.72334 -19.18509 -18.28214 -17.54965 -16.94695
-16.81408 -16.64006 -16.18249 -15.93590 -15.77952 -15.63481 -15.62433 -15.31037
-15.00925 -14.81792 -14.50272 -14.36959 -13.72620 -13.51393 -13.12158 -12.84450
-12.81829 -12.62698 -12.59072 -12.22840 -12.14515 -12.05925 -12.05510 -11.91086
-11.83914 -11.73932 -11.53937 -11.21595 -10.92140 -10.86884 -10.22009 -9.98397
-9.26206 -9.11247 -8.39358 -5.33322 -0.16560 0.37797 1.59087 1.69611
1.83876 1.87705 2.13845 2.32540 2.71279 2.82759 3.32785 3.40879
3.60300 3.67559 3.76408 3.78068 3.97433 4.01675 4.20208 4.29804
4.33634 4.36120 4.37288 4.39757 4.46020 4.48358 4.51875 4.56857
4.69188 4.70816 4.77206 4.82088 4.93731 5.03279 5.11972 5.15588
5.17853 5.26631 5.29973 5.39849 5.44262 5.53970 5.59115 5.72503
6.36522 6.50518 6.53500 7.09450 7.22100 7.99851 8.11185 9.12901
Molecular weight = 318.17amu
Principal moments of inertia in cm(-1)
A = 0.011896 B = 0.003638 C = 0.002993
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2353.152041 B = 7694.585019 C = 9353.720328
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.013 3.987
2 O -0.317 6.317
3 C 0.163 3.837
4 C -0.220 4.220
5 C -0.044 4.044
6 C -0.167 4.167
7 C -0.053 4.053
8 C -0.204 4.204
9 C 0.555 3.445
10 O -0.565 6.565
11 N -0.712 5.712
12 C 0.155 3.845
13 H 0.073 0.927
14 C -0.123 4.123
15 C -0.112 4.112
16 C -0.109 4.109
17 C -0.101 4.101
18 H 0.078 0.922
19 C 0.174 3.826
20 N -0.752 5.752
21 C -0.335 4.335
22 H 0.066 0.934
23 C -0.103 4.103
24 N -0.975 5.975
25 Si 1.129 2.871
26 H -0.288 1.288
27 H -0.270 1.270
28 H -0.292 1.292
29 H 0.070 0.930
30 H 0.108 0.892
31 H 0.073 0.927
32 H 0.161 0.839
33 H 0.166 0.834
34 H 0.155 0.845
35 H 0.136 0.864
36 H 0.406 0.594
37 H 0.068 0.932
38 H 0.073 0.927
39 H 0.082 0.918
40 H 0.075 0.925
41 H 0.058 0.942
42 H 0.065 0.935
43 H 0.028 0.972
44 H 0.005 0.995
45 H 0.362 0.638
46 H 0.245 0.755
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.922 3.430 12.394 25.416
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.081 4.081
2 O -0.228 6.228
3 C 0.115 3.885
4 C -0.239 4.239
5 C -0.062 4.062
6 C -0.185 4.185
7 C -0.072 4.072
8 C -0.207 4.207
9 C 0.344 3.656
10 O -0.445 6.445
11 N -0.366 5.366
12 C 0.049 3.951
13 H 0.091 0.909
14 C -0.161 4.161
15 C -0.150 4.150
16 C -0.147 4.147
17 C -0.120 4.120
18 H 0.097 0.903
19 C 0.047 3.953
20 N -0.396 5.396
21 C -0.466 4.466
22 H 0.084 0.916
23 C -0.294 4.294
24 N -0.623 5.623
25 Si 0.954 3.046
26 H -0.215 1.215
27 H -0.195 1.195
28 H -0.219 1.219
29 H 0.088 0.912
30 H 0.127 0.873
31 H 0.092 0.908
32 H 0.178 0.822
33 H 0.184 0.816
34 H 0.173 0.827
35 H 0.154 0.846
36 H 0.245 0.755
37 H 0.087 0.913
38 H 0.092 0.908
39 H 0.101 0.899
40 H 0.093 0.907
41 H 0.077 0.923
42 H 0.083 0.917
43 H 0.046 0.954
44 H 0.023 0.977
45 H 0.194 0.806
46 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges -21.349 3.352 11.382 24.425
hybrid contribution -0.637 -0.888 0.743 1.322
sum -21.986 2.464 12.126 25.229
Atomic orbital electron populations
1.23424 0.76657 1.05382 1.02677 1.86330 1.23168 1.26450 1.86898
1.19364 0.91012 0.85796 0.92364 1.21570 1.01532 0.91310 1.09458
1.21601 0.94679 0.98010 0.91942 1.21387 0.94444 0.98870 1.03814
1.21387 1.00641 0.90823 0.94356 1.19440 0.91506 0.93927 1.15869
1.18418 0.82330 0.89043 0.75777 1.90750 1.72356 1.30167 1.51228
1.46126 1.05397 1.10288 1.74799 1.21482 0.89845 0.86641 0.97093
0.90927 1.22500 0.97059 1.01839 0.94745 1.22347 0.93945 0.99497
0.99183 1.22471 0.98377 0.99718 0.94125 1.22373 0.94834 0.98285
0.96545 0.90336 1.20583 0.86705 0.95043 0.92953 1.42531 1.09773
1.33665 1.53672 1.20403 0.98773 1.06445 1.20985 0.91608 1.27190
0.91895 1.06215 1.04082 1.70963 1.33681 1.18301 1.39333 0.82608
0.75629 0.72538 0.73837 1.21486 1.19527 1.21861 0.91158 0.87331
0.90801 0.82169 0.81616 0.82702 0.84592 0.75548 0.91331 0.90787
0.89939 0.90659 0.92278 0.91660 0.95446 0.97709 0.80579 0.94478
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.01 0.20 9.81 113.37 1.11 1.31 16
2 O -0.32 -8.68 8.57 -68.82 -0.59 -9.27 16
3 C 0.16 4.16 6.70 22.85 0.15 4.31 16
4 C -0.22 -3.78 9.03 22.34 0.20 -3.58 16
5 C -0.04 -0.63 10.03 22.30 0.22 -0.40 16
6 C -0.17 -2.81 10.02 22.24 0.22 -2.59 16
7 C -0.05 -1.19 9.53 22.52 0.21 -0.98 16
8 C -0.20 -5.71 5.89 -20.01 -0.12 -5.83 16
9 C 0.56 18.40 7.76 86.69 0.67 19.08 16
10 O -0.56 -22.40 14.82 16.93 0.25 -22.15 16
11 N -0.71 -21.27 4.29 -442.27 -1.90 -23.16 16
12 C 0.15 4.68 3.12 45.71 0.14 4.82 16
13 H 0.07 2.45 7.56 -2.39 -0.02 2.43 16
14 C -0.12 -3.11 6.59 31.32 0.21 -2.91 16
15 C -0.11 -2.61 6.83 31.72 0.22 -2.39 16
16 C -0.11 -3.21 6.11 31.94 0.20 -3.01 16
17 C -0.10 -3.32 2.86 -9.72 -0.03 -3.35 16
18 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16
19 C 0.17 7.02 4.80 86.38 0.41 7.44 16
20 N -0.75 -38.07 5.46 -343.44 -1.88 -39.95 16
21 C -0.33 -18.91 9.99 84.03 0.84 -18.07 16
22 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16
23 C -0.10 -5.96 5.50 84.86 0.47 -5.49 16
24 N -0.97 -61.04 13.70 21.65 0.30 -60.74 16
25 Si 1.13 51.89 29.92 68.60 2.05 53.94 16
26 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16
27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16
28 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16
29 H 0.07 0.83 7.67 -2.38 -0.02 0.81 16
30 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16
31 H 0.07 0.81 7.65 -2.39 -0.02 0.79 16
32 H 0.16 1.74 6.30 -2.91 -0.02 1.72 16
33 H 0.17 1.10 8.06 -2.91 -0.02 1.08 16
34 H 0.16 1.83 8.06 -2.91 -0.02 1.80 16
35 H 0.14 2.81 6.40 -2.91 -0.02 2.79 16
36 H 0.41 11.15 4.55 -92.70 -0.42 10.73 16
37 H 0.07 1.73 7.92 -2.39 -0.02 1.72 16
38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16
39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16
40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16
41 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16
42 H 0.06 1.94 8.00 -2.38 -0.02 1.92 16
43 H 0.03 1.06 6.34 -2.39 -0.02 1.04 16
44 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16
45 H 0.36 18.94 6.41 -92.71 -0.59 18.35 16
46 H 0.24 15.25 6.77 -92.70 -0.63 14.62 16
Total: -1.00 -77.31 369.17 3.50 -73.81
By element:
Atomic # 1 Polarization: 39.04 SS G_CDS: 0.13 Total: 39.17 kcal
Atomic # 6 Polarization: -16.79 SS G_CDS: 5.14 Total: -11.65 kcal
Atomic # 7 Polarization: -120.38 SS G_CDS: -3.48 Total: -123.86 kcal
Atomic # 8 Polarization: -31.07 SS G_CDS: -0.34 Total: -31.41 kcal
Atomic # 14 Polarization: 51.89 SS G_CDS: 2.05 Total: 53.94 kcal
Total: -77.31 3.50 -73.81 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001753896428.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 14.933 kcal
(2) G-P(sol) polarization free energy of solvation -77.313 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.379 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.814 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.880 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds