Wall clock time and date at job start Tue Mar 31 2020 14:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47125 * 2 1 4 4 C 1.50709 * 109.46980 * 240.00188 * 2 1 3 5 5 H 1.08001 * 119.99633 * 239.99454 * 4 2 1 6 6 C 1.37876 * 119.99610 * 60.00390 * 4 2 1 7 7 N 1.31503 * 120.00558 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99574 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47191 * 59.99533 * 8 6 4 10 10 H 1.48498 * 109.47340 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47408 * 299.99797 * 8 6 4 12 12 N 1.46494 * 109.47425 * 120.00495 * 2 1 3 13 13 C 1.46504 * 120.00099 * 59.99597 * 12 2 1 14 14 S 1.65608 * 120.00040 * 240.00302 * 12 2 1 15 15 O 1.42104 * 106.40122 * 156.45616 * 14 12 2 16 16 O 1.42096 * 106.39922 * 23.53282 * 14 12 2 17 17 N 1.65601 * 107.21310 * 269.99338 * 14 12 2 18 18 C 1.47023 * 125.64366 * 89.97935 * 17 14 12 19 19 C 1.54323 * 107.26860 * 178.97207 * 18 17 14 20 20 C 1.55162 * 103.10328 * 337.71452 * 19 18 17 21 21 H 1.08993 * 111.00605 * 277.51860 * 20 19 18 22 22 C 1.52998 * 111.00124 * 153.66286 * 20 19 18 23 23 C 1.52994 * 109.47259 * 58.51578 * 22 20 19 24 24 C 1.53006 * 109.46705 * 178.51027 * 22 20 19 25 25 C 1.52996 * 109.47647 * 298.51054 * 22 20 19 26 26 C 1.47423 * 125.65166 * 270.01281 * 17 14 12 27 27 H 1.08997 * 109.47256 * 299.99674 * 1 2 3 28 28 H 1.08999 * 109.47153 * 60.00009 * 1 2 3 29 29 H 1.09002 * 109.47001 * 179.97438 * 1 2 3 30 30 H 0.96999 * 120.00370 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.47270 * 270.00152 * 13 12 2 32 32 H 1.08996 * 109.47207 * 30.00298 * 13 12 2 33 33 H 1.09001 * 109.47248 * 150.00613 * 13 12 2 34 34 H 1.08999 * 109.88481 * 59.55822 * 18 17 14 35 35 H 1.08999 * 110.01231 * 298.45951 * 18 17 14 36 36 H 1.08997 * 110.72294 * 96.16753 * 19 18 17 37 37 H 1.09004 * 110.72089 * 219.26140 * 19 18 17 38 38 H 1.09005 * 109.47345 * 59.99448 * 23 22 20 39 39 H 1.08999 * 109.47434 * 179.97438 * 23 22 20 40 40 H 1.09004 * 109.47397 * 299.99482 * 23 22 20 41 41 H 1.09004 * 109.46960 * 60.00846 * 24 22 20 42 42 H 1.09005 * 109.47238 * 179.97438 * 24 22 20 43 43 H 1.08993 * 109.47505 * 300.00223 * 24 22 20 44 44 H 1.09002 * 109.47101 * 53.52020 * 25 22 20 45 45 H 1.09000 * 109.47144 * 173.52205 * 25 22 20 46 46 H 1.09002 * 109.47357 * 293.52248 * 25 22 20 47 47 H 1.09001 * 110.36484 * 322.94034 * 26 17 14 48 48 H 1.08996 * 110.36343 * 85.25680 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 1.8280 -2.5196 -4.0083 10 1 1.8270 -0.4197 -5.2205 11 1 3.8074 -1.1188 -4.0079 12 7 2.0184 -0.6907 1.1960 13 6 1.6645 -2.0933 1.4278 14 16 2.9705 0.1141 2.2862 15 8 2.8228 -0.5648 3.5258 16 8 2.6904 1.4971 2.1192 17 7 4.5438 -0.1044 1.8179 18 6 5.2944 0.7680 0.9030 19 6 6.7196 0.1882 0.7832 20 6 6.8662 -0.6550 2.0775 21 1 7.1480 -0.0273 2.9228 22 6 7.8723 -1.7907 1.8809 23 6 9.2294 -1.2068 1.4835 24 6 8.0172 -2.5752 3.1865 25 6 7.3764 -2.7260 0.7763 26 6 5.4235 -1.2061 2.2488 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7083 1.1610 -3.4844 31 1 0.7377 -2.1445 1.9992 32 1 1.5295 -2.5969 0.4707 33 1 2.4629 -2.5820 1.9862 34 1 5.3384 1.7792 1.3074 35 1 4.8160 0.7811 -0.0764 36 1 6.8058 -0.4438 -0.1006 37 1 7.4602 0.9876 0.7577 38 1 9.5828 -0.5404 2.2705 39 1 9.9464 -2.0159 1.3439 40 1 9.1263 -0.6479 0.5534 41 1 7.0503 -2.9913 3.4696 42 1 8.7337 -3.3847 3.0464 43 1 8.3705 -1.9090 3.9734 44 1 7.1633 -2.1465 -0.1220 45 1 8.1441 -3.4679 0.5565 46 1 6.4684 -3.2300 1.1074 47 1 5.2348 -1.4559 3.2929 48 1 5.2740 -2.0806 1.6157 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337786310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:35 Heat of formation + Delta-G solvation = -86.814352 kcal Electronic energy + Delta-G solvation = -27422.851707 eV Core-core repulsion = 23832.185474 eV Total energy + Delta-G solvation = -3590.666233 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.48570 -36.66478 -36.10681 -35.69764 -35.21203 -32.59618 -30.10460 -29.06688 -28.62189 -27.39481 -27.11119 -25.48079 -25.17755 -22.55507 -21.58629 -20.64879 -18.50617 -18.28249 -17.24864 -16.80346 -16.39371 -16.09371 -15.20158 -14.74494 -14.46516 -14.13730 -14.10973 -13.56227 -13.45065 -13.21367 -13.10550 -12.92214 -12.67442 -12.29945 -12.26183 -11.96735 -11.77924 -11.71294 -11.70576 -11.49128 -11.37604 -11.29763 -11.20732 -11.13586 -11.00846 -10.95851 -10.88022 -10.44538 -10.42094 -10.39502 -10.26663 -10.20631 -10.06521 -9.30554 -8.56385 -8.48614 -7.93824 -6.09829 -4.18375 1.22955 3.23808 3.30204 3.30707 3.52728 4.14568 4.34063 4.42480 4.57214 4.66751 4.90628 5.02216 5.18123 5.20402 5.23607 5.38816 5.50500 5.51876 5.55438 5.63685 5.68619 5.69469 5.77207 5.79365 5.88949 5.94182 6.04603 6.08405 6.09795 6.17320 6.19134 6.27065 6.28800 6.35137 6.49585 6.54044 6.63722 6.75962 6.89096 6.92919 7.12831 7.51328 7.62509 7.78341 8.05155 8.26112 8.84535 9.47715 10.95112 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.012712 B = 0.005514 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.200820 B = 5076.822701 C = 6304.384595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.990 5.990 13 C 0.108 3.892 14 S 2.794 3.206 15 O -0.996 6.996 16 O -0.978 6.978 17 N -1.017 6.017 18 C 0.122 3.878 19 C -0.125 4.125 20 C -0.087 4.087 21 H 0.082 0.918 22 C -0.058 4.058 23 C -0.140 4.140 24 C -0.143 4.143 25 C -0.150 4.150 26 C 0.119 3.881 27 H 0.012 0.988 28 H 0.092 0.908 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.352 -5.510 6.971 16.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.075 0.925 4 C -0.564 4.564 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.832 5.832 13 C -0.038 4.038 14 S 2.805 3.195 15 O -0.980 6.980 16 O -0.962 6.962 17 N -0.856 5.856 18 C -0.004 4.004 19 C -0.164 4.164 20 C -0.107 4.107 21 H 0.100 0.900 22 C -0.059 4.059 23 C -0.197 4.197 24 C -0.200 4.200 25 C -0.207 4.207 26 C -0.006 4.006 27 H 0.031 0.969 28 H 0.111 0.889 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.852 -4.858 7.615 15.709 hybrid contribution 0.349 -0.709 -1.298 1.520 sum 13.202 -5.568 6.317 15.658 Atomic orbital electron populations 1.22051 0.97995 0.99632 1.00720 1.18720 0.91856 0.92692 0.80275 0.92451 1.21328 1.31849 1.13080 0.90129 0.92012 1.24912 0.94976 0.94961 0.98914 1.69865 1.36132 1.22587 1.23888 0.86611 0.79133 0.79688 0.82223 1.20329 1.21269 1.20277 1.57807 1.64113 1.21375 1.39927 1.21157 0.98829 0.82122 1.01722 1.01450 0.71671 0.73356 0.73017 1.93524 1.85865 1.76480 1.42171 1.93569 1.83550 1.32245 1.86823 1.59111 1.29129 1.36409 1.60914 1.21652 0.91612 0.93055 0.94083 1.22773 0.95914 0.99507 0.98164 1.22479 0.93694 0.96186 0.98373 0.90014 1.20433 0.94857 0.94789 0.95827 1.21868 0.95738 1.00611 1.01492 1.21907 1.01889 0.99759 0.96491 1.22062 1.01054 0.99058 0.98530 1.22210 0.88855 0.89784 0.99796 0.96933 0.88920 0.94901 0.92590 0.93949 0.90270 0.93388 0.91874 0.90445 0.90126 0.90684 0.92810 0.92856 0.92290 0.92354 0.92758 0.92708 0.91797 0.92888 0.92035 0.90818 0.91199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.97 37.16 0.33 -3.14 16 2 C 0.27 6.57 2.62 -69.08 -0.18 6.39 16 3 H 0.06 1.57 6.91 -51.93 -0.36 1.21 16 4 C -0.52 -13.31 7.99 -34.44 -0.28 -13.59 16 5 H 0.06 1.53 7.33 -52.49 -0.38 1.14 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.19 11.32 55.43 0.63 -23.56 16 8 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.99 -21.01 3.12 -115.85 -0.36 -21.37 16 13 C 0.11 1.98 9.28 59.85 0.56 2.53 16 14 S 2.79 57.36 6.30 -107.50 -0.68 56.69 16 15 O -1.00 -21.12 16.53 -57.17 -0.95 -22.06 16 16 O -0.98 -23.07 16.28 -57.17 -0.93 -24.00 16 17 N -1.02 -17.33 3.76 -111.14 -0.42 -17.75 16 18 C 0.12 1.91 6.99 -3.06 -0.02 1.89 16 19 C -0.12 -1.49 5.10 -24.89 -0.13 -1.62 16 20 C -0.09 -0.99 2.41 -88.21 -0.21 -1.20 16 21 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 22 C -0.06 -0.55 0.61 -154.51 -0.09 -0.64 16 23 C -0.14 -1.16 8.23 37.15 0.31 -0.85 16 24 C -0.14 -1.24 8.35 37.16 0.31 -0.93 16 25 C -0.15 -1.48 7.68 37.16 0.29 -1.20 16 26 C 0.12 1.65 5.78 -2.27 -0.01 1.64 16 27 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 29 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 1.46 7.02 -51.93 -0.36 1.09 16 33 H 0.05 0.76 7.79 -51.93 -0.40 0.36 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.08 0.96 5.91 -51.93 -0.31 0.65 16 37 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.49 7.23 -51.93 -0.38 0.12 16 41 H 0.06 0.53 7.61 -51.93 -0.40 0.13 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.68 6.00 -51.93 -0.31 0.37 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.63 6.36 -51.93 -0.33 0.30 16 47 H 0.07 1.01 7.76 -51.93 -0.40 0.61 16 48 H 0.07 0.93 5.63 -51.93 -0.29 0.64 16 LS Contribution 374.62 15.07 5.65 5.65 Total: -1.00 -30.16 374.62 -9.73 -39.89 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -8.42 Total: 0.49 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 0.77 Total: -9.12 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: -0.15 Total: -62.68 kcal Atomic # 8 Polarization: -44.18 SS G_CDS: -1.88 Total: -46.06 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 57.36 SS G_CDS: -0.68 Total: 56.69 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.16 -9.73 -39.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337786310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.923 kcal (2) G-P(sol) polarization free energy of solvation -30.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds