Wall clock time and date at job start Tue Mar 31 2020 11:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47293 * 2 1 4 4 C 1.46501 * 119.99846 * 87.08313 * 3 2 1 5 5 C 1.53121 * 109.52189 * 65.69028 * 4 3 2 6 6 C 1.53036 * 109.27828 * 182.37305 * 5 4 3 7 7 N 1.46848 * 109.52354 * 59.17941 * 6 5 4 8 8 C 1.46894 * 110.99801 * 174.15911 * 7 6 5 9 9 C 1.53009 * 109.46836 * 170.00080 * 8 7 6 10 10 C 1.52997 * 109.46817 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46960 * 179.97438 * 10 9 8 12 12 H 1.07993 * 119.99764 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00193 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99894 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00266 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46861 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47238 * 119.99954 * 15 13 11 18 18 H 1.48499 * 109.47266 * 240.00086 * 15 13 11 19 19 C 1.46844 * 111.19608 * 298.25576 * 7 6 5 20 20 C 1.53037 * 109.52380 * 61.74416 * 19 7 6 21 21 S 1.65601 * 119.99854 * 267.08971 * 3 2 1 22 22 C 1.81391 * 104.44904 * 269.99780 * 21 3 2 23 23 O 1.42107 * 104.27673 * 26.07130 * 21 3 2 24 24 O 1.42107 * 104.27434 * 153.92277 * 21 3 2 25 25 H 1.09004 * 109.47104 * 64.19146 * 1 2 3 26 26 H 1.09000 * 109.46757 * 184.18879 * 1 2 3 27 27 H 1.08998 * 109.47513 * 304.19330 * 1 2 3 28 28 H 1.09003 * 109.47590 * 239.99679 * 2 1 3 29 29 H 1.08995 * 109.47245 * 119.99697 * 2 1 3 30 30 H 1.09005 * 109.51982 * 185.81252 * 4 3 2 31 31 H 1.09003 * 109.50099 * 62.42786 * 5 4 3 32 32 H 1.09001 * 109.49807 * 302.31551 * 5 4 3 33 33 H 1.08999 * 109.46062 * 299.16160 * 6 5 4 34 34 H 1.08996 * 109.45069 * 179.18670 * 6 5 4 35 35 H 1.08995 * 109.47114 * 50.00355 * 8 7 6 36 36 H 1.08994 * 109.47215 * 289.99809 * 8 7 6 37 37 H 1.08994 * 109.47295 * 59.99748 * 9 8 7 38 38 H 1.09004 * 109.47042 * 299.99968 * 9 8 7 39 39 H 1.09005 * 109.47125 * 60.00194 * 10 9 8 40 40 H 1.08994 * 109.47223 * 299.99722 * 10 9 8 41 41 H 0.97001 * 120.00081 * 179.97438 * 14 13 11 42 42 H 1.08998 * 109.46160 * 181.75742 * 19 7 6 43 43 H 1.08996 * 109.46561 * 301.72724 * 19 7 6 44 44 H 1.08999 * 109.50879 * 180.87714 * 20 19 7 45 45 H 1.09000 * 109.50742 * 60.76102 * 20 19 7 46 46 H 1.08988 * 109.47317 * 60.00048 * 22 21 3 47 47 H 1.09005 * 109.47056 * 180.02562 * 22 21 3 48 48 H 1.09006 * 109.47170 * 299.99873 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2016 2.0933 1.2671 5 6 3.3183 1.4241 2.0733 6 6 3.4649 2.1354 3.4203 7 7 2.1954 2.0624 4.1546 8 6 2.3381 2.6133 5.5089 9 6 0.9564 2.7513 6.1515 10 6 1.1051 3.3257 7.5618 11 6 -0.2559 3.4622 8.1946 12 1 -1.1384 3.1682 7.6459 13 6 -0.3742 3.9613 9.4744 14 7 0.7007 4.3188 10.1427 15 14 -2.0610 4.1299 10.2590 16 1 -3.0991 3.6616 9.3061 17 1 -2.1167 3.3076 11.4944 18 1 -2.3080 5.5538 10.6006 19 6 1.1183 2.7400 3.4217 20 6 0.9016 2.0467 2.0747 21 16 2.3630 2.1376 -1.4323 22 6 4.1112 1.7595 -1.7346 23 8 1.5385 1.4786 -2.3839 24 8 2.1934 3.5196 -1.1484 25 1 -0.3633 0.4474 -0.9252 26 1 -0.3633 -1.0249 0.0751 27 1 -0.3634 0.5775 0.8500 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.4689 3.1309 1.0665 31 1 4.2561 1.4920 1.5218 32 1 3.0687 0.3763 2.2402 33 1 3.7281 3.1798 3.2527 34 1 4.2495 1.6521 4.0025 35 1 2.8129 3.5929 5.4544 36 1 2.9534 1.9442 6.1103 37 1 0.4816 1.7718 6.2059 38 1 0.3411 3.4204 5.5500 39 1 1.5798 4.3054 7.5069 40 1 1.7205 2.6569 8.1635 41 1 0.6174 4.6704 11.0429 42 1 0.1986 2.6960 4.0049 43 1 1.3924 3.7815 3.2541 44 1 0.1127 2.5594 1.5242 45 1 0.6140 1.0087 2.2416 46 1 4.2429 0.6798 -1.8026 47 1 4.4271 2.2241 -2.6687 48 1 4.7141 2.1481 -0.9138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066884001.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:14 Heat of formation + Delta-G solvation = -75.677240 kcal Electronic energy + Delta-G solvation = -25892.815329 eV Core-core repulsion = 22302.632038 eV Total energy + Delta-G solvation = -3590.183291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.58637 -37.48089 -36.95248 -36.20071 -34.09954 -32.57025 -31.01534 -30.95065 -29.89044 -29.46480 -26.37011 -24.37420 -23.21570 -22.97330 -21.86292 -19.99371 -19.55095 -19.10572 -18.02009 -16.81543 -16.60758 -16.31522 -15.55584 -15.14817 -14.97924 -14.55172 -14.40383 -14.17264 -14.01047 -13.78236 -13.61113 -13.56935 -13.31461 -13.09538 -12.66395 -12.37706 -12.35629 -12.25567 -12.18367 -11.98629 -11.67375 -11.49267 -11.47233 -11.35325 -11.11602 -10.99868 -10.85271 -10.65014 -10.52995 -10.45103 -10.27882 -9.63941 -9.35958 -9.21820 -9.02278 -8.33752 -8.05085 -5.99011 -4.00990 -0.09294 2.26826 3.31938 3.39432 3.43761 3.54232 3.76790 4.10488 4.18852 4.42917 4.47756 4.50414 4.68769 4.75267 4.94493 5.04472 5.10556 5.18046 5.23417 5.25918 5.34354 5.37088 5.39569 5.52366 5.63676 5.65639 5.70602 5.80493 5.84060 5.91858 6.00568 6.08601 6.11585 6.17156 6.30009 6.32082 6.37622 6.70333 6.77816 7.09244 7.37856 7.39069 7.69036 7.83612 8.01380 8.44500 9.06468 9.63152 11.12479 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.026401 B = 0.002471 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.322214 B =11330.482921 C =11701.488535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.123 3.877 3 N -0.992 5.992 4 C 0.144 3.856 5 C -0.126 4.126 6 C 0.055 3.945 7 N -0.538 5.538 8 C 0.056 3.944 9 C -0.112 4.112 10 C 0.022 3.978 11 C -0.517 4.517 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.048 3.952 20 C -0.121 4.121 21 S 2.604 3.396 22 C -0.676 4.676 23 O -0.954 6.954 24 O -0.954 6.954 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.032 0.968 34 H 0.076 0.924 35 H 0.029 0.971 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.013 0.987 40 H 0.016 0.984 41 H 0.259 0.741 42 H 0.093 0.907 43 H 0.033 0.967 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.127 0.873 47 H 0.125 0.875 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.288 -8.741 -24.667 27.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.002 4.002 3 N -0.829 5.829 4 C 0.039 3.961 5 C -0.166 4.166 6 C -0.074 4.074 7 N -0.263 5.263 8 C -0.071 4.071 9 C -0.150 4.150 10 C -0.016 4.016 11 C -0.556 4.556 12 H 0.073 0.927 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.081 4.081 20 C -0.160 4.160 21 S 2.698 3.302 22 C -0.825 4.825 23 O -0.945 6.945 24 O -0.944 6.944 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.111 0.889 43 H 0.051 0.949 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.145 0.855 47 H 0.143 0.857 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.638 -8.670 -25.012 27.552 hybrid contribution 0.128 0.674 0.666 0.957 sum 7.766 -7.996 -24.345 26.776 Atomic orbital electron populations 1.22455 0.95631 1.02590 1.03568 1.21174 0.95162 0.81059 1.02783 1.57646 1.79796 1.24164 1.21303 1.21086 0.96550 0.95949 0.82552 1.22007 0.97668 1.01520 0.95384 1.22028 0.92725 0.98640 0.93988 1.62059 1.04696 1.56609 1.02971 1.22278 1.00003 0.97228 0.87545 1.21798 0.93593 1.00772 0.98829 1.19073 0.97092 0.95831 0.89590 1.21285 0.93084 1.41872 0.99344 0.92654 1.25031 0.96557 0.95588 0.97370 1.69978 1.27995 1.43822 1.11815 0.86549 0.84567 0.77667 0.79303 1.19720 1.21035 1.21060 1.22232 0.96797 0.95228 0.93835 1.22059 0.96358 1.02639 0.94936 1.05075 0.77444 0.74269 0.73444 1.30614 1.27925 1.12267 1.11699 1.93608 1.63675 1.76114 1.61062 1.93617 1.85416 1.31823 1.83557 0.91808 0.91760 0.90956 0.90637 0.89942 0.88306 0.91793 0.90254 0.94933 0.90525 0.95295 0.91054 0.92543 0.93106 0.96821 0.96583 0.93100 0.88851 0.94862 0.91092 0.89922 0.85458 0.85654 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 9.88 37.15 0.37 -1.14 16 2 C 0.12 0.87 5.28 -4.04 -0.02 0.85 16 3 N -0.99 -8.00 2.66 -107.17 -0.29 -8.28 16 4 C 0.14 1.36 2.57 -67.81 -0.17 1.18 16 5 C -0.13 -1.08 5.48 -26.65 -0.15 -1.22 16 6 C 0.06 0.61 5.42 -3.83 -0.02 0.59 16 7 N -0.54 -7.47 4.81 -234.68 -1.13 -8.60 16 8 C 0.06 0.95 5.27 -3.82 -0.02 0.92 16 9 C -0.11 -2.26 4.40 -26.73 -0.12 -2.38 16 10 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 11 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 15 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 19 C 0.05 0.64 4.85 -3.84 -0.02 0.62 16 20 C -0.12 -1.31 4.09 -26.65 -0.11 -1.42 16 21 S 2.60 22.03 6.01 -107.50 -0.65 21.38 16 22 C -0.68 -3.09 10.99 101.05 1.11 -1.97 16 23 O -0.95 -10.66 16.55 -57.54 -0.95 -11.61 16 24 O -0.95 -11.57 16.52 -57.54 -0.95 -12.52 16 25 H 0.06 0.61 7.68 -51.93 -0.40 0.21 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.64 5.01 -51.93 -0.26 0.38 16 28 H 0.08 0.42 7.68 -51.93 -0.40 0.02 16 29 H 0.08 0.51 6.71 -51.93 -0.35 0.16 16 30 H 0.10 1.00 6.79 -51.93 -0.35 0.65 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.67 6.83 -51.93 -0.35 0.32 16 33 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.81 8.12 -51.93 -0.42 0.39 16 35 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.05 1.01 6.21 -51.93 -0.32 0.68 16 39 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.09 1.37 5.81 -51.93 -0.30 1.07 16 43 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.77 7.94 -51.93 -0.41 0.36 16 45 H 0.08 0.87 6.09 -51.93 -0.32 0.55 16 46 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.12 0.44 8.14 -51.92 -0.42 0.02 16 48 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 LS Contribution 377.03 15.07 5.68 5.68 Total: -1.00 -34.38 377.03 -10.76 -45.14 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -8.50 Total: -4.55 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: 0.30 Total: -17.04 kcal Atomic # 7 Polarization: -42.51 SS G_CDS: -0.68 Total: -43.19 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -1.90 Total: -24.14 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 22.03 SS G_CDS: -0.65 Total: 21.38 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.38 -10.76 -45.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066884001.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.539 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds