Wall clock time and date at job start Tue Mar 31 2020 11:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47293 * 2 1 4 4 C 1.46501 * 119.99846 * 87.08313 * 3 2 1 5 5 C 1.53121 * 109.52189 * 65.69028 * 4 3 2 6 6 C 1.53036 * 109.27828 * 182.37305 * 5 4 3 7 7 N 1.46848 * 109.52354 * 59.17941 * 6 5 4 8 8 C 1.46894 * 110.99801 * 174.15911 * 7 6 5 9 9 C 1.53009 * 109.46836 * 170.00080 * 8 7 6 10 10 C 1.52997 * 109.46817 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.46960 * 179.97438 * 10 9 8 12 12 H 1.07993 * 119.99764 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00193 * 179.97438 * 11 10 9 14 14 N 1.31520 * 119.99894 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00266 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.46861 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47238 * 119.99954 * 15 13 11 18 18 H 1.48499 * 109.47266 * 240.00086 * 15 13 11 19 19 C 1.46844 * 111.19608 * 298.25576 * 7 6 5 20 20 C 1.53037 * 109.52380 * 61.74416 * 19 7 6 21 21 S 1.65601 * 119.99854 * 267.08971 * 3 2 1 22 22 C 1.81391 * 104.44904 * 269.99780 * 21 3 2 23 23 O 1.42107 * 104.27673 * 26.07130 * 21 3 2 24 24 O 1.42107 * 104.27434 * 153.92277 * 21 3 2 25 25 H 1.09004 * 109.47104 * 64.19146 * 1 2 3 26 26 H 1.09000 * 109.46757 * 184.18879 * 1 2 3 27 27 H 1.08998 * 109.47513 * 304.19330 * 1 2 3 28 28 H 1.09003 * 109.47590 * 239.99679 * 2 1 3 29 29 H 1.08995 * 109.47245 * 119.99697 * 2 1 3 30 30 H 1.09005 * 109.51982 * 185.81252 * 4 3 2 31 31 H 1.09003 * 109.50099 * 62.42786 * 5 4 3 32 32 H 1.09001 * 109.49807 * 302.31551 * 5 4 3 33 33 H 1.08999 * 109.46062 * 299.16160 * 6 5 4 34 34 H 1.08996 * 109.45069 * 179.18670 * 6 5 4 35 35 H 1.08995 * 109.47114 * 50.00355 * 8 7 6 36 36 H 1.08994 * 109.47215 * 289.99809 * 8 7 6 37 37 H 1.08994 * 109.47295 * 59.99748 * 9 8 7 38 38 H 1.09004 * 109.47042 * 299.99968 * 9 8 7 39 39 H 1.09005 * 109.47125 * 60.00194 * 10 9 8 40 40 H 1.08994 * 109.47223 * 299.99722 * 10 9 8 41 41 H 0.97001 * 120.00081 * 179.97438 * 14 13 11 42 42 H 1.08998 * 109.46160 * 181.75742 * 19 7 6 43 43 H 1.08996 * 109.46561 * 301.72724 * 19 7 6 44 44 H 1.08999 * 109.50879 * 180.87714 * 20 19 7 45 45 H 1.09000 * 109.50742 * 60.76102 * 20 19 7 46 46 H 1.08988 * 109.47317 * 60.00048 * 22 21 3 47 47 H 1.09005 * 109.47056 * 180.02562 * 22 21 3 48 48 H 1.09006 * 109.47170 * 299.99873 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2016 2.0933 1.2671 5 6 3.3183 1.4241 2.0733 6 6 3.4649 2.1354 3.4203 7 7 2.1954 2.0624 4.1546 8 6 2.3381 2.6133 5.5089 9 6 0.9564 2.7513 6.1515 10 6 1.1051 3.3257 7.5618 11 6 -0.2559 3.4622 8.1946 12 1 -1.1384 3.1682 7.6459 13 6 -0.3742 3.9613 9.4744 14 7 0.7007 4.3188 10.1427 15 14 -2.0610 4.1299 10.2590 16 1 -3.0991 3.6616 9.3061 17 1 -2.1167 3.3076 11.4944 18 1 -2.3080 5.5538 10.6006 19 6 1.1183 2.7400 3.4217 20 6 0.9016 2.0467 2.0747 21 16 2.3630 2.1376 -1.4323 22 6 4.1112 1.7595 -1.7346 23 8 1.5385 1.4786 -2.3839 24 8 2.1934 3.5196 -1.1484 25 1 -0.3633 0.4474 -0.9252 26 1 -0.3633 -1.0249 0.0751 27 1 -0.3634 0.5775 0.8500 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.4689 3.1309 1.0665 31 1 4.2561 1.4920 1.5218 32 1 3.0687 0.3763 2.2402 33 1 3.7281 3.1798 3.2527 34 1 4.2495 1.6521 4.0025 35 1 2.8129 3.5929 5.4544 36 1 2.9534 1.9442 6.1103 37 1 0.4816 1.7718 6.2059 38 1 0.3411 3.4204 5.5500 39 1 1.5798 4.3054 7.5069 40 1 1.7205 2.6569 8.1635 41 1 0.6174 4.6704 11.0429 42 1 0.1986 2.6960 4.0049 43 1 1.3924 3.7815 3.2541 44 1 0.1127 2.5594 1.5242 45 1 0.6140 1.0087 2.2416 46 1 4.2429 0.6798 -1.8026 47 1 4.4271 2.2241 -2.6687 48 1 4.7141 2.1481 -0.9138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066884001.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:13 Heat of formation + Delta-G solvation = -100.531022 kcal Electronic energy + Delta-G solvation = -25893.893070 eV Core-core repulsion = 22302.632038 eV Total energy + Delta-G solvation = -3591.261032 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.49709 -38.22319 -37.91202 -36.96058 -35.79495 -34.09627 -32.25429 -31.90776 -30.57738 -30.15789 -28.05292 -25.59725 -24.35727 -23.77263 -23.20446 -21.38602 -20.57942 -19.78406 -18.71063 -18.50508 -17.47618 -17.25368 -16.71113 -16.34778 -16.20606 -15.86485 -15.68201 -15.03459 -14.85443 -14.68307 -14.39501 -14.26177 -13.99422 -13.96523 -13.91148 -13.57510 -13.36007 -13.26764 -13.14940 -13.06923 -12.92445 -12.75386 -12.63214 -12.45480 -12.37094 -12.20462 -12.00730 -11.93283 -11.65633 -11.51160 -11.41188 -11.27593 -11.21954 -10.96302 -10.54985 -9.90594 -9.20233 -8.20191 -6.30819 -0.69007 1.39848 1.40008 1.53525 1.64813 2.40874 2.97578 3.00832 3.13107 3.17109 3.58503 3.87662 3.96830 4.07042 4.14261 4.18701 4.20563 4.29130 4.38044 4.44924 4.49787 4.52910 4.59185 4.66570 4.71226 4.73346 4.79670 4.92853 4.96529 5.01757 5.03843 5.04846 5.08042 5.18720 5.24559 5.26775 5.33563 5.48089 5.52174 5.56665 5.71820 5.75773 5.86330 6.13370 6.25054 6.30943 6.86448 7.38443 8.91953 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.026401 B = 0.002471 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.322214 B =11330.482921 C =11701.488535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.119 3.881 3 N -0.991 5.991 4 C 0.147 3.853 5 C -0.117 4.117 6 C 0.049 3.951 7 N -0.538 5.538 8 C 0.067 3.933 9 C -0.096 4.096 10 C 0.026 3.974 11 C -0.541 4.541 12 H 0.058 0.942 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.964 3.036 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.278 1.278 19 C 0.047 3.953 20 C -0.115 4.115 21 S 2.601 3.399 22 C -0.651 4.651 23 O -0.989 6.989 24 O -1.000 7.000 25 H 0.043 0.957 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.030 0.970 34 H 0.086 0.914 35 H 0.022 0.978 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.051 0.949 39 H -0.012 1.012 40 H -0.007 1.007 41 H 0.263 0.737 42 H 0.074 0.926 43 H 0.024 0.976 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.153 0.847 47 H 0.141 0.859 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.286 -10.272 -25.968 29.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.006 4.006 3 N -0.827 5.827 4 C 0.041 3.959 5 C -0.156 4.156 6 C -0.079 4.079 7 N -0.263 5.263 8 C -0.060 4.060 9 C -0.134 4.134 10 C -0.012 4.012 11 C -0.579 4.579 12 H 0.076 0.924 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.789 3.211 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.204 1.204 19 C -0.081 4.081 20 C -0.155 4.155 21 S 2.700 3.300 22 C -0.804 4.804 23 O -0.980 6.980 24 O -0.991 6.991 25 H 0.063 0.937 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.105 0.895 33 H 0.049 0.951 34 H 0.104 0.896 35 H 0.041 0.959 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.007 0.993 40 H 0.012 0.988 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.042 0.958 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.171 0.829 47 H 0.160 0.840 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.590 -10.203 -26.328 29.514 hybrid contribution -0.123 1.146 1.033 1.548 sum 8.467 -9.057 -25.295 28.170 Atomic orbital electron populations 1.22478 0.97062 1.03010 1.02014 1.21347 0.94077 0.80634 1.04495 1.57459 1.80496 1.24343 1.20374 1.20948 0.95881 0.96019 0.83030 1.21979 0.98741 1.01197 0.93716 1.22196 0.91268 0.99187 0.95250 1.62061 1.06375 1.55934 1.01894 1.22012 0.97436 0.97179 0.89408 1.21542 0.95941 1.00049 0.95854 1.18972 0.95530 0.94250 0.92431 1.21720 0.94177 1.41977 0.99996 0.92362 1.25977 1.00849 0.95056 0.98013 1.70102 1.30457 1.44536 1.12328 0.85413 0.79475 0.77868 0.78385 1.18653 1.20247 1.20410 1.22202 0.95854 0.95183 0.94892 1.21999 0.97429 1.02424 0.93618 1.04888 0.79249 0.73006 0.72845 1.30376 1.22439 1.14354 1.13277 1.93562 1.66347 1.76227 1.61855 1.93560 1.87019 1.34513 1.84015 0.93745 0.90477 0.92010 0.88681 0.88352 0.89211 0.88471 0.89473 0.95134 0.89591 0.95949 0.91001 0.92741 0.93006 0.99319 0.98842 0.92779 0.90727 0.95772 0.91753 0.89337 0.82862 0.84043 0.83519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.93 9.88 71.98 0.71 -2.22 16 2 C 0.12 1.39 5.28 86.38 0.46 1.85 16 3 N -0.99 -14.08 2.66 -492.97 -1.31 -15.39 16 4 C 0.15 2.53 2.57 45.07 0.12 2.65 16 5 C -0.12 -1.62 5.48 30.65 0.17 -1.45 16 6 C 0.05 1.00 5.42 86.33 0.47 1.46 16 7 N -0.54 -14.54 4.81 -896.40 -4.31 -18.84 16 8 C 0.07 2.27 5.27 86.31 0.46 2.73 16 9 C -0.10 -3.98 4.40 30.60 0.13 -3.84 16 10 C 0.03 1.37 4.97 29.85 0.15 1.52 16 11 C -0.54 -31.23 9.11 25.60 0.23 -31.00 16 12 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 13 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 14 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 15 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 16 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 C 0.05 1.27 4.85 86.33 0.42 1.69 16 20 C -0.12 -2.46 4.09 30.65 0.13 -2.33 16 21 S 2.60 40.23 6.01 -56.49 -0.34 39.89 16 22 C -0.65 -3.18 10.99 113.37 1.25 -1.93 16 23 O -0.99 -21.44 16.55 -127.65 -2.11 -23.55 16 24 O -1.00 -24.17 16.52 -127.65 -2.11 -26.28 16 25 H 0.04 0.86 7.68 -2.38 -0.02 0.84 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 1.07 5.01 -2.39 -0.01 1.06 16 28 H 0.09 0.76 7.68 -2.39 -0.02 0.74 16 29 H 0.10 0.87 6.71 -2.39 -0.02 0.86 16 30 H 0.09 1.74 6.79 -2.38 -0.02 1.73 16 31 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 1.13 6.83 -2.39 -0.02 1.11 16 33 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 1.60 8.12 -2.39 -0.02 1.58 16 35 H 0.02 0.78 8.08 -2.39 -0.02 0.76 16 36 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.05 2.12 6.21 -2.39 -0.01 2.10 16 39 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 40 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 41 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.07 2.25 5.81 -2.39 -0.01 2.24 16 43 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.06 1.44 7.94 -2.39 -0.02 1.42 16 45 H 0.09 1.78 6.09 -2.39 -0.01 1.76 16 46 H 0.15 0.09 8.14 -2.40 -0.02 0.07 16 47 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 48 H 0.15 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -76.68 377.03 -1.81 -78.49 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 0.92 Total: 6.43 kcal Atomic # 6 Polarization: -35.63 SS G_CDS: 5.14 Total: -30.49 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -5.33 Total: -91.32 kcal Atomic # 8 Polarization: -45.61 SS G_CDS: -4.22 Total: -49.83 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 40.23 SS G_CDS: -0.34 Total: 39.89 kcal Total: -76.68 -1.81 -78.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066884001.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.037 kcal (2) G-P(sol) polarization free energy of solvation -76.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds